Cyprinodon variegatus (sheepshead minnow): 107088444
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Entry
107088444 CDS
T06110
Name
(RefSeq) nipped-B-like protein B
KO
K06672
cohesin loading factor subunit SCC2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
107088444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvg03036
]
107088444
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
107088444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT_EZ
Cnd1
HEAT
Motif
Other DBs
NCBI-GeneID:
107088444
NCBI-ProteinID:
XP_015236099
LinkDB
All DBs
Position
Unknown
AA seq
3014 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTAKSLLYNGRISDEVSSLLVCRDEN
LVTQLAHSLNQVSTEHIELKDNLGNDEPEGDMPILLQTLLSRNPRIFRDKSVLQQPLIQQ
YKISQNQVHGSPASNYQQSPSGCFTSPQCGSASQFVPQQNSPIPSPYTPQSPADYIQYNP
PSYSHQTQQVVGGVRTILDNKVSEQLSSNSSNHNTKAGLDEEYINVAQRLGNEENDSSIK
AAVFSVCEESPKKPRPSLIMQSPSLDVPQAAAPDLLLNTADRRKRQRERSKEENENMDKN
VFYDIVSSPSKDSARLTLKLSRVKIPDMGRSEELLPTSPMDGDHETVVLNNDIQSSSSPQ
DFSHKSEVNEEANCQQVAAQPNTKETGVISGIVFDDSEIEALAEIERMESANEKERCSKE
VQDKDKPLKKRKQDTYPQEPGIETNEGPSVHLGSPVSKLTPKKSSAASNGAGRPALMVSI
DLKQAGRVIGQPVVVLEQQPLCKDHLRRLKTSADPENRPGIIKKLPDTSQISGCDGRTES
SKQKQENMRESKRNQNSKPGSDRGHSEDRCVAWLTHDIHSDLSPKDETNNNSHRSQINKA
ETPKSISKVERNSRYEEEKGRSKEKDKDRDRQREKDGDKEKLSDREQSSERDKNEDKDQD
RVTDKLRDKARDRVKSREKDKSIEMDKYEDRDQERVKEKLREKARDREKNRERDKSIEMD
KVEDKGQDRVKGKFRDKVRDLEKPREKDKPFEIDRDEDKDQVRVKGKLRDKVKDLEKSRE
KDKSTDVDRDEDKDQERVKGKLRDKVKDREKPREKDKPTDMDGDKDKDQDRVKGKLRDKV
RDREKPNEKDKPTDIDRDENKDQERVKGKLSGRDKCRDGENQKEREKSRAEEKSRERRSD
EDKNLERLKSKVRDRDKDGEKVRGRDKSIDLDKDEDDGEGVKDKVRDKDKIRDKERKRER
DKLRERDKEEGKDQDRVRDKFRDKEKSRGRDKSTEMDKDEDKDLERVKDKVKERDKIKDR
EKLRGGEKGQSEKGRHMDENFDINSEQDKDVKRDRDKDKEKGKEKNRDREKDRDRNKKHK
MASEGKANRNPAEEQTKSDSPKLKHDEGRKSAELTDRQRTSSSSLQTTPNKEQRTSGDSS
TSQPASKRQGSERKAIDLPPYLLGGNSGSLKNFVIPKLKRDGKDGADKDLRLKSKLIDTW
SEPLVRLERVSLVENLNKRTKPVVVVKKLSIEDVKRIMKETKNAHRSRQWSSYDSSDRER
ANKRRHSMISKRSKYAEVDSDNEEVEEDDDEESESEDESPRKKKKKSHDKAWKMEERKGS
RDHKRSGSFHNSRRGSSGRQRDWSSNDDSDEHSPPPSLNDVARKMKKQKSRTAYDSKMTT
EEKMDSSAYRRFVTNVDNILESLEDVDLTAADDDEIPQELLLGKQQLNELCSDSTKIKAM
GIFSKFSSSKLVKILNILEKNIQDSVTLSTLMSQDNDSMDEERLWRDLIMERVTKSADSC
LTALNIMTSPHMPKAVYIEDVIERVLQFTKFHLQNTLYPQYDRSYRAGASHTSKSKKPKS
SAHKQKVVTVLYNKVCDIISFISELLEIQLLTDTTILQVSSLGITPFFVENVSELQLCAI
SVVTAVFSRYEKHRQLILEEIFTSLARLPTSKRGLRNFRLNSSDSDGPALYIQMVSALVL
QLIQCVVNLPSEKETDEEPKKKVDKDVLITNSYETAMRTAQNFLSVFLKKCGSKQGEDDY
RPLFENFVHDLLSAVNKPEWPAAELLLSLLGRLLVHQFSNKQTEMALRVASLDYLGTVAS
SLRKDSLSSKMDQRTINRILKETPGSDEILQLQKALLDFLDENIDADPALLFARNFYIAQ
WFRDTTVEVEKAMKSQTENDDDPKYRRHSTDSDTAAEIVQTVEARKKFLRKVIKTTPLNF
SSVKISSDTVDYEDSCLIVRYLASMRPFAQSFDIYLSQILRVLGESAIAVRTKAMKCLSE
VVAVDPSILGRVDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRPELIEQYYDMLIERIL
DTGISVRKRVIKILRDICLELPDFHKITEMCVRMIRRVNDEEGIKKLVNETFQKLWFSPT
PSHDKEAMKRKILNITDVVLACKDSGYDWFEQLLQNLLKSEEDASYKPTKKACVQLVDNL
VEHILKYEESIADCEDKGINSSRVVACITTLYLVTKIRPNLMVKHAMAMQPYLNTKCSTQ
NDFMVICNVAKILELVVPLMENPSESFLNTIEEDLMRLIIKHGMTVVQHCVSCLGAIVNK
VTHNYKFVWSSFNRFYGALAKLKTQHQEDPSSSTLAANKPTLLRSLFTVGALCRHFDFDL
EEFKGASKIIIKDKVLELLLYFTTHEDEEVQIKAMTGLGFQFIMHPELMFVQDVKVLYIS
LLSDESSSVNLKIHVLKNLQTYLQEEDSRMQEADREWNKQAKQEDLKEMGDISSGMSSSI
MQIYLKQVLESFFHSQSTVRHFALSVITLTLSQGLIHPVQCVPYLIAMGTDPEPTMKNKA
DQQLVEIDKKYSGFIHMKAVAGLKMSYQVQQAINGGKRAVIRGFRHDDSDTALCYHLYTL
VRGNRQHRRAFLISLLNLFDDSSKTEVNMLLFIADNLACFPYQTQEEPLFIMHHIDITLS
VSGSNLLQSFKECLRKEPVRHEKKVKTKKRKKKHHRKRKNSSDEEDDEDEEKSSSSSSSS
SSSSSSSSDEEEEKVRKRKKPGGCDSDSDLDDEDAVMDRLPENPAPLLEFASASQGILLL
LVLKQHMKNLYGFSDSKIQKYSPTESAKVYDKAVNRKSKVNFNPRQTLEYLKNDVANREL
SYETKRNIVKQFLDFKVLMEHLDRDEEDEDGGEANANARNKAINSLLKGPKPQNHNHSNH
TAPVETEDEDSEDEDPPARKPRKDVDSAEDAGQVVEVMDIVAICRPKYKDRPQIAKIIQK
NRSGYSIHWMTGSYSGPWAVAKKRDGRKKVPWVDNIKESDIIYKKISLTSGQKLTNKVAQ
TLRALYASRDGTKS
NT seq
9045 nt
NT seq
+upstream
nt +downstream
nt
atgaatggtgatatgcctcatgttcccatcactactcttgctggaattgctagcctaact
gacttgttgaaccagctgcctttgccctcccctcttccggccaccactgctaagagcctg
ctttacaatggaaggatctccgacgaggtcagcagcttgttggtgtgtcgagacgagaat
ctggtgactcagctggcccatagccttaaccaggtctccactgaacatatagagctaaag
gacaacctgggaaatgatgaacctgagggtgacatgccaatacttctccaaactttgctg
tccaggaaccccaggatcttcagggacaaaagtgtattacagcaaccattaatacagcag
tacaagatttctcagaaccaagtgcatggaagtccagcatcaaactatcagcaaagcccc
tctggatgctttacgtccccacagtgtggctcagcttctcagtttgtaccccagcagaac
agtcctatacctagcccctacaccccccagagtcctgcagactacattcagtacaatcca
cccagttactctcatcagactcaacaagttgtcggtggcgtgagaacaattcttgacaac
aaagtctctgaacagctgtcaagtaattcatctaaccataatacgaaagccggtttggat
gaagagtacataaacgtggctcagagactgggaaatgaggagaatgactcttccataaaa
gccgccgtattctctgtttgtgaagagagtccaaaaaagcccaggccttctctcatcatg
cagtcaccatcacttgatgtgccacaggctgcagcacctgacctgctccttaacactgcc
gaccgtagaaagaggcagcgagaaaggagcaaagaagaaaacgagaacatggacaaaaat
gtcttctatgacatagttagctctccatctaaggactctgccagattgactttaaaactg
tctcgagtgaagatcccagacatgggccgctctgaagaactcctcccaacctcacctatg
gacggagatcatgaaacggttgttctaaacaatgatattcagtcatcaagttctcctcaa
gatttttcgcacaagtcagaggttaacgaggaagcaaactgtcaacaagttgctgcacag
ccaaacaccaaggagaccggagtcatcagtggaattgtgtttgatgactctgagattgaa
gcacttgctgagattgaaagaatggaatcagccaatgagaaagagcgatgctctaaggag
gtccaagataaagacaagcctctaaaaaaacggaaacaagacacataccctcaggaacct
ggcattgagacaaacgaaggaccatctgtacatttgggtagccctgtcagcaaactgaca
cccaagaagtcgagtgctgcgagtaatggtgccggtcggcctgccttgatggtcagtatt
gatctgaagcaagctgggagagtaataggtcagccagtagttgtcttggaacagcagccg
ttgtgtaaagatcacttacgtcgccttaagacaagtgcagatcctgaaaaccgacctggg
atcatcaaaaagcttcctgacacttcccagatttctggttgtgatggacgtacagaaagt
agtaaacagaagcaggaaaacatgcgtgaatcaaaacgcaatcaaaatagtaaacctggc
agtgataggggacactcagaggacagatgtgtagcgtggctaacacatgacatacattca
gatttgtcccccaaagatgaaacaaacaacaacagccaccgatcccaaataaacaaagcc
gaaacgccaaaatccataagcaaggtggaacgcaactcacgatatgaagaagagaaaggc
aggagcaaagaaaaggataaggacagggatagacagagagaaaaagatggagacaaagaa
aagctcagtgatcgagaacaatccagcgaaagagacaaaaatgaagacaaggaccaggac
agagtcacagacaaacttcgagacaaagccagagaccgagtaaaaagcagagaaaaagac
aaatccattgagatggacaagtatgaagacagagatcaggagagagtcaaagaaaaactt
cgagaaaaagccagagatagagaaaaaaacagagaaagagacaaatccattgagatggac
aaagttgaagacaagggtcaggacagagtaaaaggcaaatttcgagacaaagtcagagat
ctagaaaaacccagagaaaaagataaacccttcgagattgacagagatgaagacaaagat
caggtcagagtcaaaggcaaacttcgagacaaagtcaaagacctagaaaaatccagagaa
aaagacaaatccacagatgtggacagagacgaagacaaagatcaggaaagagtcaaaggc
aaacttcgagacaaagtcaaagatcgagaaaaaccaagagaaaaagacaaacccacagat
atggacggagataaagacaaagaccaggacagagtcaaaggcaaacttcgagacaaagtc
agagatcgagaaaaacccaatgaaaaagacaaacccacagatattgacagagatgaaaac
aaagatcaggagagagtgaaaggcaaacttagtggtagagacaaatgtagagatggagaa
aaccaaaaagaaagagaaaaatccagggcagaggaaaagtcaagagaaagacgcagtgat
gaggacaaaaacctggagagactcaaaagcaaagtcagagatagagacaaagatggagaa
aaggtcaggggaagagacaaatccatagatttggataaagatgaggacgatggagaggga
gtcaaagacaaagttcgagataaagacaaaatcagagacaaagaaagaaaacgagaaaga
gacaaactcagagaaagggataaagaggaaggaaaagatcaagacagagtcagagacaag
tttagagataaagaaaaatccaggggaagagacaaatccacagagatggacaaagatgaa
gacaaagaccttgaaagagttaaagacaaggttaaagaaagggacaaaatcaaagacaga
gaaaaactcagaggaggagaaaaaggtcagtcagagaaaggcagacacatggatgaaaac
tttgacattaacagcgaacaagacaaagatgttaagagagacagagataaagacaaagaa
aaaggtaaagaaaagaacagagacagagagaaagacagagacaggaacaaaaagcacaag
atggcgtcggaaggcaaagctaacagaaacccagcggaggagcaaactaaatctgacagc
cctaaactgaagcatgatgaaggcagaaaatcagctgagctcacagatcggcaaaggact
tcctcttccagcctgcagaccaccccaaacaaagagcagcgaacaagtggggacagcagc
acaagccaacctgcaagcaaacggcaaggctctgagagaaaagccattgatttgccaccg
tacctgctgggtggcaattcaggaagtctcaagaactttgtgattcctaaactgaaacga
gatggaaaagacggagcagataaagatctcaggctcaaaagcaaactgatagatacctgg
agtgaaccattggtgcggttagagagagtttctctggttgagaacttgaacaaaagaact
aaaccagtcgttgtggtcaagaaactcagcatagaggatgtaaaacggatcatgaaggaa
accaagaatgcacacagatccagacagtggtcctcctatgactcctcggacagagagaga
gcaaataagcgaaggcacagcatgatcagtaaaagatccaaatatgctgaggtggattca
gataacgaggaggtggaagaggatgatgatgaggagtctgagtctgaggatgagtctcca
agaaaaaagaaaaagaaaagtcacgacaaagcttggaagatggaagagaggaaaggttct
agggatcacaaacgaagtggaagttttcataactctcggcggggttcaagtggccgtcaa
cgggactggagcagcaatgatgattcagatgaacactcgcctccaccgagcctgaatgat
gttgcccgaaaaatgaaaaaacagaaaagcagaacggcgtacgattccaagatgacaaca
gaggaaaaaatggactcatctgcttataggaggtttgtaaccaacgtggacaacattctg
gagagccttgaggatgtagacctcactgctgcagatgatgatgagatacctcaagagctg
ttgcttggaaagcagcaattaaacgagctttgcagcgattctaccaagattaaagccatg
ggaatctttagcaagttttcttccagtaaactggtgaaaattctgaatatattggagaaa
aacattcaggacagtgtcaccctttccactttaatgagtcaagacaatgattcaatggat
gaggaacggctgtggcgtgacctcatcatggagcgggtgaccaagtctgcagattcctgt
ttgactgcgcttaacataatgacgtccccacacatgcccaaggctgtttatatagaggat
gtgatcgagagggtgttgcaattcaccaagttccacctacagaacactttgtaccctcag
tatgaccgttcataccgagcaggtgcctcgcacacttcaaagtccaagaaaccaaaatcc
tctgcccacaaacagaaagtggtcacggtgctctacaacaaagtttgtgatattatcagc
ttcatctcagagctccttgaaatccagctgctcactgacaccaccattctccaggtgtca
agccttggaattacgcctttttttgtcgagaatgtcagtgaactgcagttatgcgccatt
tctgtggtgacagcagttttctctcgctatgagaagcacaggcagctcatccttgaagag
attttcacgtccctcgccagacttcccacaagtaaacgtggtctcaggaactttaggtta
aacagcagcgattcagacggacctgcactgtacatccagatggtctcggctctggttctt
cagctcattcagtgtgtggttaaccttccatcggagaaggagacggacgaggaacctaaa
aagaaggttgataaagatgtcctcattaccaactcttatgaaactgccatgaggacagct
cagaactttctctctgtatttctcaaaaaatgtggcagtaaacagggagaagacgactac
aggcctctgtttgagaactttgtacatgacctgctgtcagccgtcaacaagcctgagtgg
cctgcagccgaactgctgctcagtttactgggtagactgctggttcaccagttcagtaat
aagcagacagaaatggcgctcagggtggcgtccctcgactacctcggcactgttgcctcc
agcctgcgtaaagactctctctcttccaagatggaccaaagaaccatcaatcgcatcctt
aaagagactcctggtagtgatgagatactgcagctccaaaaggctctgctggatttcctc
gatgaaaacattgatgcagatcctgctttattgtttgcgaggaacttttacattgcccag
tggttcagagacactacagttgaggtagaaaaagcaatgaagtctcaaaccgagaacgac
gacgatcccaagtaccggcggcattccacggattcggacacggccgcagagattgtgcag
acagttgaggcacggaaaaaattcctccgcaaggtcatcaagacaacaccattgaacttc
agctctgtaaagataagctctgacactgtagactatgaggactcctgtctgattgttaga
tatctggcctctatgaggccatttgcacagagctttgacatttatctatcacagatcttg
agagtcctgggagagagcgctattgcagtgagaactaaagccatgaagtgtctatcagag
gtagtggctgtggatccaagtatattaggaagagtggacatgcagcggggggtgcacggt
cgtctaatggacaactccactagtgtcagagaagcagctgtagagcttcttggccgcttc
gtgctcagtcgacctgagctaatcgagcagtactacgacatgcttattgaaaggatactg
gacacaggaatcagtgtgagaaaaagagtcattaagattcttagggacatttgcttggag
ctgccagatttccacaagataacagagatgtgtgtgaggatgatccgcagagtcaatgac
gaggaagggatcaagaaattggtgaacgagacgttccagaaactctggttttcaccaaca
cccagtcatgataaagaagctatgaagagaaagatcctgaacatcacagatgtggtgttg
gcatgcaaagattcaggatatgactggtttgagcagctcctacaaaatctgctaaaatca
gaggaggacgcttcatataaaccaaccaagaaggcttgtgttcagttggtggacaattta
gtggagcatatactaaaatatgaggaatctattgcagactgcgaagacaaagggataaac
tccagccgtgtggtagcgtgcatcaccaccctttatctggtgactaaaatcaggcctaac
ctcatggttaaacatgcaatggctatgcagccctacttgaacacaaaatgcagcactcag
aatgacttcatggttatttgcaacgtggccaagatcttggagcttgtcgtacctctgatg
gaaaatccaagcgagtcgttcctcaacacgattgaggaagacctgatgaggctcattatt
aaacacggcatgacggtggtgcagcactgtgtgagctgccttggtgccattgtgaacaag
gtgacacataattacaagtttgtgtggtcttctttcaatcgcttctatggagctctggct
aaactcaagacgcagcaccaggaggaccccagcagctccactctggctgctaacaagcca
actctgctgcgctcattgttcactgtgggggctctttgtcgacactttgattttgaccta
gaagagttcaagggagcgagcaagatcatcataaaggacaaggttttggaacttctgcta
tactttaccacccatgaggatgaagaggtccagatcaaggccatgactggtttaggcttc
cagttcatcatgcatccagaactcatgtttgtgcaagatgtgaaggttctttacatcagt
ttgctgtcagatgagagcagctctgtcaatctgaagatccatgtgctcaagaaccttcaa
acgtacctacaggaggaggactcccggatgcaagaggcggatcgggaatggaataagcaa
gcaaagcaggaagatctgaaggaaatgggagacatctcctcaggcatgagcagctccatt
atgcagatttacctcaagcaggtgctggagtccttcttccactcacagtccaccgtgcgg
cactttgctctcagcgtcatcacactgactctgagtcagggcctcatacaccctgtacag
tgtgtcccctacctgatcgccatgggaacagatccagagccgaccatgaagaacaaggca
gaccaacaactagtggagatcgataaaaaatattcaggattcattcatatgaaggctgtt
gccgggttgaagatgtcctatcaggtccagcaggccataaatgggggcaaacgcgcggtg
atccgaggtttccgtcatgacgattccgacacggctctctgttaccatctgtacactttg
gtccgtgggaacagacagcacagacgggccttcctcatctccctgctcaacctgttcgat
gacagctctaaaacagaggtaaacatgctgctcttcatagcagacaacctggcgtgcttt
ccttaccaaacccaggaggagcctcttttcatcatgcaccatatagacatcactctgtct
gtctctggtagcaacctgcttcagtctttcaaagagtgtttacggaaagagcctgtaaga
catgaaaagaaggtgaagacaaagaagagaaaaaagaaacatcatcgtaagaggaaaaac
agttctgatgaggaggacgatgaggatgaagagaagagcagcagctcatccagcagcagc
agtagcagtagcagcagcagcagcgatgaagaggaggagaaagtccgcaagcgaaagaag
cctggaggctgtgactcggactcggatctggatgatgaggatgctgtgatggaccgtctg
cctgaaaaccccgcccctctgctggaatttgccagcgcctcacagggaatcctgctgctg
ctggtgctcaagcagcatatgaagaatctttacggcttctcagacagcaaaatccagaag
tactcaccgaccgagtccgccaaagtttatgacaaggcagtgaacaggaaatctaaggtg
aacttcaaccctcgtcagacccttgaatacctgaagaacgatgtggccaacagagagctc
agctatgagactaagaggaatatcgtcaaacagtttttggatttcaaggtgctaatggag
cacttggaccgtgatgaagaggatgaagatgggggtgaagcaaacgctaatgccagaaac
aaagccatcaattcgctgctgaagggcccaaaaccacaaaatcacaaccacagtaaccac
actgctccagtggagacagaagatgaggacagtgaagatgaagaccctcctgcccgaaaa
ccaagaaaagatgtggattctgctgaggacgcgggtcaggtggtggaggtaatggacata
gtcgccatctgtcggcccaaatacaaagaccgaccgcagatcgccaagatcatccaaaag
aacaggagcggctacagcatacactggatgacgggatcttactctggaccttgggccgtg
gcaaagaaacgggacggtcgcaaaaaggtgccttgggtcgacaacatcaaggagtcggac
attatttacaagaaaatctccttgacaagcggacagaagctcacgaacaaagtggcacag
actttacgagcgctctacgcgtccagggacgggacaaagagttaa
DBGET
integrated database retrieval system
