Cyprinodon variegatus (sheepshead minnow): 107088555
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Entry
107088555 CDS
T06110
Symbol
col14a1
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cvg00535
]
107088555 (col14a1)
Proteoglycans [BR:
cvg00535
]
Extracellular matrix (ECM) proteoglycans
Others
107088555 (col14a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Pur_ac_phosph_N
FN3_Tor_3rd
Fn3_R-PTP-O
VWA_3
Motif
Other DBs
NCBI-GeneID:
107088555
NCBI-ProteinID:
XP_015236297
Ensembl:
ENSCVAG00000019722
LinkDB
All DBs
Position
Unknown
AA seq
1874 aa
AA seq
DB search
MFLMGEVRWRLLALLVLLAFVSCHPSKAESQVSAPRRLRFKVHSSSRLLVSWREPKGDVD
SYLFLYNSLPGGQQKEMFVSKSDTRVIIPDYNPSKDYIISVIAVRGSEQSRPLQGRFKAK
KAARGESDGRDEIEPQRLTDSVRPPDGANEISGADQFVCHTEAIADIVILVDGSWSIGRI
NFRLVRMFLENLINAFDIGIDKTRIGLAQYSGDPRIEWHLNTYSTKDTVIDAVKNLPYKG
GNTLTGLALNFIMDNCFKPESGSRAGVPKIGILITDGKSQDDVVPPAESLRKAGVELFAI
GVKNADENELRSIASEPHHSHVYNVADFNIMSSIVEGLTKKVCEQVELQDKDIKQKFTPQ
KMGMPHSLETSETTAQSFRVSWSPAPGNVETYRVVYRPAQGGESQEVVMPGSETSVVLEH
LSSLTEYQLAVFAVYEDETSEALRGSETTLPLPSVSRLQLLDITHSSMRARWSHVDGVSG
YTVLYSPLTVDGDLNNNGCCPQVNVANGVTEVELSDLAPNTEYAVTVYAMYGEEASEPIT
SQEATLPLSPPRNLQFSDITHNSAHISWDPPPGGVKGYRIMCVRTDGVITKEVMVGPVNS
FDLRKLTSLMEYSVAIFALYNEGQSEPLTDGFTTTPIPGPLNLRSSDIDTDSFRVSWDHS
AMAISLYRLSWGQLSGGDTREVILRGDENTYTLSDLSPSTEYEVLLTAIFDDESESDTVS
VIETTLAATTTIQPTTTVTRKAVKNLYLSDETTQSLDASWELEDPNVESYRISYSDLSGD
QGEESISVGGGQKNTVLQPLLPDRQYKVTVTPVYSDGQDGISASALGSTLPLLPPENLRV
SEESYNRFLVSWDPPQSPTEGYRIVYRPVYDQGPLSETTVGEDVTSVVLLNLLSGTEYTV
QVTAFYSAGPSEPELINAKTLFLGVSGLSTYQVHPKSMCVQWQPLLHATSYRLSIQSTLN
GQRQELTLGGSASHHCFYELTPSSQYQISINTQMQEMEGPSVSITDMTLPEPTQAPTEPP
TTEPTPTIPPAKEVCKEAKADLAFLVDGSWSIGDDNFMKITRFLYSTMGSLDLIGPDGTQ
VAVAQFSDDARTEFLLSSHSNKEALLEAIQKIRYKGGNTKTGRAIKHVKESIFTSDAGAR
RGVPKVLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHVFF
VDDLDAVKKIEEQLITFVCEAATATCPSVLMSGNTLAGFKMMEKFGLVEKEYSTIPGVSM
EPGSFNSYPCYRLHRDALVSQPTKYLHPEGLPSDYTVSMMLRLLPETPQEPFALWEILNK
DNEPIVGLILDSSGKTLTFFNHDYRGDFQTVTFEGPDIKKIFHGSFHKLHVTVSKTSVKV
VLDCSAVGEKSIRAAGNITTDGVEVLGKMVRSRGRRDSSAPFQLQMFDIICSTSWASRDK
CCELPALRVEEQCPPLPHACTCSQESKGPPGPSGPPGGPGIRGARGDRGEPGVTGPQGPT
GEIGPSGPPGPPGPQGPSGLSIQGPPGIRGEKGERGDVGPAGPMGIPGSPGSPGRDGPPG
TRGQPGNSGPQGRQGPPGPIGVPGAPGAPGPKGPAGPTGEQGVPGLVGTKGDKGERGDVQ
SQAAVRAIARQVCEQIIQSHLSRYNSILNQIPQQSSVSVRTVPGPPGEPGRRGPPGPQGE
QGPPGRPGFPGTNGQNGQPGQRGLPGEKGERGNPGIGSQGPRGPSGPPGLPGEGRTGSQG
PPGRPGSPGAAGRPGNPGATGPAGQPGYCDQSSCLGYNVGVQPLPHGEGSYQPYSPPHRQ
PYDDDDQGGGEEEEAYYDGYHSQYYPQQPSQFIYRQSGYYPGNSEDVELRSPGVVRFSQT
VVMEDKVRGRADSP
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgatgggagaggtcaggtggcgtctgctggccttgctggttttgcttgccttt
gtttcctgccaccccagtaaggctgagagtcaagtttcagctccaaggaggctgcgtttc
aaagtgcacagttccagcagacttcttgtttcatggagggagcccaaaggagatgttgac
agctatttatttctctacaacagcttaccaggtgggcagcagaaggagatgtttgtgtct
aaatctgacacgagagttataataccggactacaacccttccaaggactacattattagt
gtcattgctgtgagagggagcgagcagagtagaccacttcagggcagatttaaagctaaa
aaagctgccagaggtgaaagtgatggaagagatgaaattgaaccccaaaggcttacagat
tcagttagacctcctgacggcgctaatgagatatctggagccgaccagtttgtgtgccac
actgaggccattgcagatattgtgatcttggttgacggctcgtggagcataggccggatc
aacttcaggctggtccgtatgtttttggaaaacctgatcaatgcattcgacattggcatt
gataagaccaggataggtctggcacagtacagtggtgatcccaggatagaatggcatcta
aatacttactctacaaaagacactgtcatcgatgcagttaaaaacttgccatataaagga
ggaaacactctcacagggcttgcattgaattttattatggacaactgtttcaagcctgag
tctggctcaagggcaggtgtgccaaagattgggattctcatcacagatggaaaatcccag
gacgacgttgtacccccagcagagagcttgcgaaaagctggtgttgagctgtttgctatt
ggcgtaaagaatgctgatgagaatgagctgcggtctatcgcctctgagccacatcacagt
cacgtctacaatgtggctgacttcaacattatgagctctatagtcgagggattgacaaag
aaagtgtgtgaacaagtggagctgcaagacaaagacatcaagcagaaatttacgccgcaa
aaaatgggaatgccacacagcctggaaacctcagagaccacagctcagagctttcgcgtg
tcatggagtcctgcacctggaaatgtagagacgtacagagtggtttatcgccctgctcag
ggaggagagtcacaggaggttgtcatgcctggcagtgagacctctgtggtgttagagcat
ctcagctctctaaccgagtaccagctcgctgtgtttgccgtgtatgaggatgaaacaagt
gaagctctaagaggatcagaaaccaccttgcctctcccatcagtgagccgcctccagctg
ttagatattactcacagcagcatgagagccagatggagccatgtggatggagtctctggc
tacacagtgctctattcccctctaacagttgatggagacttgaacaacaatgggtgttgt
ccccaggttaatgtagctaatggagtaactgaggtggagctgagtgacttggcgcccaac
acagaatatgctgtcactgtttatgctatgtatggagaggaggccagtgagccaataaca
agtcaggaagcaacattgcctctcagtcctcccaggaatctccagttttctgacatcact
cataactctgcccacatcagctgggaccctccgcctggcggagttaaaggttaccgcatc
atgtgtgtcaggactgatggagtgatcacaaaagaggtgatggtgggcccagttaattct
tttgacctcaggaagctgacttctctgatggagtactcggtggccatctttgctctgtac
aacgagggccaatcagagccgctcactgatggcttcacaaccactccaattcctggtcct
cttaatctgcgttccagcgacatcgacacagacagcttcagggttagctgggatcactca
gccatggccatctctctctacagactctcttggggacaactttcaggtggtgatacaaga
gaggtgattttgagaggagatgaaaacacatacaccctcagcgacctcagcccttccacc
gaatatgaagtcctgttaacagccatctttgatgacgaatctgaaagtgacacagtctct
gttatagaaaccacattggctgcaactacaacgattcaacccacaaccacagtgacacgt
aaggctgtgaaaaacctttacctgagtgatgagaccacccaaagcttagacgcatcctgg
gagctggaggaccctaatgtggagagctacaggatttcctactctgacctcagcggggac
caaggggaggaatctatctcagttgggggtggtcagaaaaacacagtgctccagccttta
ctaccagacagacagtacaaagtgacggtgacgccagtgtacagtgatggacaagacggc
atcagcgcttctgccttgggttctacattgcctctcttgcctcctgaaaatctacgcgtg
tcagaagagtcgtataaccgcttcctggtctcctgggatccgcctcagtctccaacagaa
ggttacaggattgtctatcgaccagtctatgatcaaggtccactttcggagacaactgta
ggtgaagatgtgacctccgttgtccttctcaatcttttgagtgggacagagtacactgtc
caagtgacggccttctactcagcaggaccaagtgaaccggaactcattaatgcaaagaca
ttgttccttggtgtttctggcctgtcgacctatcaggtgcatcctaagagcatgtgtgtt
cagtggcagcctcttctacacgccacctcatatcggctctccatacagtccaccctcaat
ggtcagagacaagaactaaccctgggaggttcagcttcacaccactgtttctatgagctc
acacccagcagccagtaccagatcagtataaacactcaaatgcaagaaatggaaggacca
tctgtatctattactgacatgacattaccagagcccactcaggctccgactgaacctccc
accacagagcccactcccaccatcccacctgctaaagaagtatgtaaggaagccaaggct
gacctggcatttttggttgatggctcttggtctatcggggatgacaacttcatgaagatc
acacgctttctctacagcacaatgggctcattagatctgattggaccagatggcacccag
gtggccgttgctcagttcagtgatgatgcacggacagaatttctgctgagttctcacagc
aacaaggaagcgctgctggaagccatccagaagatcagatacaagggggggaacaccaag
acaggtcgagccattaaacatgtgaaggaatccatcttcacctcagatgcaggagcgagg
aggggtgttcccaaggttctggtagttctgactgatggtcgttcacaagatgatgtcaac
aaagtgtcaaaggagatgcaaatggagggctacataatctttgcaattggatttgcggat
gcagactatggagagctggtgaatattgccagtaaacctagtgacaggcacgtctttttc
gtggatgatttggacgctgtgaagaaaatagaagagcagcttatcacctttgtctgtgag
gccgccactgccacttgtccatctgttctgatgagtggcaatacactggcgggttttaaa
atgatggagaagtttggcctggtagagaaggagtacagcaccatacctggagtttctatg
gagcctggttcatttaacagctacccctgctacaggttgcaccgcgatgctctggtgtca
cagcccaccaagtaccttcaccctgaaggtttgccttcagactacaccgtttctatgatg
ctccgtttgctccctgagaccccgcaggaaccctttgctttgtgggagatcctcaacaaa
gacaatgagccgatcgtgggactaatactcgacagctctgggaagacgttgacattcttc
aaccacgactacagaggagacttccagactgttacatttgaaggaccagacatcaagaaa
atcttccatggcagcttccacaagctccatgtaactgtcagcaagacatcggtgaaggtg
gtgttagactgttctgcagtgggagagaaatccatcagggcagctggaaatatcaccaca
gacggagtcgaggtcctcgggaaaatggttcggtccagaggcagacgggacagctctgct
ccatttcagttgcagatgtttgatataatctgcagcacgtcctgggccagcagagataaa
tgttgtgagctgccagctttgagagtggaagagcagtgtcctcctctgcctcatgcctgt
acctgttcccaagagagcaaaggacctccaggaccttctggaccccctggtggacctggc
ataaggggagccagaggagacagaggggaaccaggagtgacgggaccacaggggcctaca
ggggaaatcggtccatctggacctccaggaccgcctggccctcagggacccagtggactc
tccattcagggacccccaggtattcggggagaaaagggagaaagaggcgacgttggacca
gcagggccaatgggtatccctggaagccctggctcccctggcagagatggtcctcctgga
acgaggggtcagccaggtaacagcggacctcagggaagacaaggacctcctggacctatt
ggagtcccgggagctcctggagctccaggaccaaaaggaccagcagggcctacaggcgaa
caaggagttcctggtcttgttggtaccaaaggcgataaaggagaacgaggtgatgttcag
tcccaagcagccgtgagagcgattgcacgacaagtttgtgaacaaatcatccaaagccat
ctgtctcgctataactccatcttgaaccagatcccccaacagtcatcagtatcagtccga
accgttcctggcccaccgggggagccaggaaggagaggtcctcctggtcctcagggagag
caaggtccacctggaaggcccggttttcccggtactaatggccagaatggccaacctggt
cagagaggattgccaggagaaaagggagagagggggaatccaggcattgggagtcaggga
cctcgaggaccatctggtccacccggtctgcctggtgaaggtcggacaggcagccagggc
ccacctggaaggcccggaagcccaggagcagcaggtaggcctggaaatccaggagctaca
ggaccagctggacagccaggatactgtgaccagagctcatgtctgggatacaatgttgga
gtccagcccctcccccatggcgagggcagctaccagccctacagtcccccccacagacag
ccgtatgacgacgacgaccaaggaggaggcgaggaagaggaggcctactatgatggctac
cactcccagtactacccacagcagccttctcagtttatctacaggcagagtggctactac
ccaggaaactctgaggatgtggagctgaggtccccgggtgtcgtcaggttttcacaaacc
gtggtcatggaggacaaagtaagaggaagagcggactcaccataa
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integrated database retrieval system
