Cyprinodon variegatus (sheepshead minnow): 107088557
Help
Entry
107088557 CDS
T06110
Symbol
btaf1
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107088557 (btaf1)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
107088557 (btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
HEAT_EZ
ARM_ECM29
Motif
Other DBs
NCBI-GeneID:
107088557
NCBI-ProteinID:
XP_015236305
Ensembl:
ENSCVAG00000006087
LinkDB
All DBs
Position
Unknown
AA seq
1857 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSPSWDTRI
AAGQAVEAIVKNIPEWNPAPKPKEESREDLSPEDSSCDRLNFYHFDISRLLRHGASLLGS
AGVEFELQEDKTGEMDPKERLARQRKLLQKKLGLDMGAAIGMDTNDLFNDEDLDYSCHPG
GFKAHGHKATAGCSSRNHVTIQAAELIDSEFRPGMSSRQKNKAKRLAKLVAKQKSRDVDP
SEKSNDCLEGEPEEKRRKTTNVVIDQPATEHKVLIDNVPDNSGLLEESQEWPLESFCEEL
CNDLFNPSWEVRHGAGTGLREIIKSHGAGGGKLLGSSAEQMLRQHQEWIEDLVIRLLCVF
ALDRFGDFVSDEVVAPVRETCAQTLGVALLHMCENSVLMTVDVLLKLLKEDQWEVRHGGL
LGIKYALAVRQDLISVLLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGLIQLLPNKVP
FIVNTLWDALLDLDDLTASTNSIMTLLSLLLTFPHVRQCSMGQSLTVLVPRVWPFLRHTI
SSVRKAALETLYTLLSKADESIAVWINPILQDMLRHIFQSCILESNEEILDLIQKVWMEL
LSRVPQQLVVAASCPWMGAWLCLMMQASHIPIDLNMLLEVKARSKDKTGSKARQGAMQVK
ETVQQYIAGAETVADDPLTRDYVVFRARLMAAKLLGALCRCICDPQLNAASQEMRPAESL
GQLLLFHLNSKSALQRIAVALVLCEWAALQKDCFMVSSMVQPRLLAVLTEQLYYDEIAIP
FTRMQNECKQLISLLAEVHVDLHDRLNCSVFTIDQANELVTTVFTETTAALNVKSKQWLA
LESKRQQAQSTVMETNSEWQQLHLRVHMFTACAVINLEVLPDKLNPLVRPLMETVKKEEN
TLIQSYAASFIAKLLQQCASRSPCPNPKIIKNLCASACMDPSTTPSSACPVPTAQEPAKG
GGLEKDCLHHIVDKTQGIITLYRHQRAAFAITSKRGPTPKAPKTPATELPPGSMMSPDND
ESKKQFLVQRRGAEFALTTIARHFGANLNKSLPYLWDNTVGPLKAVAMENLSIDRQAQLE
KGDAAAQELVNSLQVLEVMAGAMAAELRPLLLEHLPHLFTCLQHPYTAVRHMAARCVGVL
SRIATLETMNSFLECVLHWLAAIDDCTKQEGAIEALACVMEQLDVDIVPYIVLLVVPVLG
RMSDPTDSIRFMATQCFATLIRLLPLEAGIPDPPAMSADLVQQKVRERQFLEQLLDGRKL
ENYKIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHYLRG
QEYAKTKAADCSPLPSLVVCPPTLTGHWVDEVAKFCTKEYLNPLHYTGPPTERMRLQHQV
KKHNLVVASYDVVRNDIDFFKNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVILSG
TPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEALH
RQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKVNVEDSISVASN
EEEEKPKLKATGHVFQALQYLRKLCNHPNLVLTPQHPEYKRITEQLASQNSNLRDIQHAP
KLSALKQLLLDCGLGGGGGSEGGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKPKLPTVTY
LRLDGSVPAGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDL
QAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVINQENTSLQSMGTDQL
LNLFTLDKDDKGDKGEQSSSTSGKASIKSVLDGLGELWDQQQYDSEYNLDSFMNSLH
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttcaagacttgatcgtttgtttatcttgctcgacaccggaacaacaccagta
accaggaaagcagcagcacagcagcttggagaagtggtgaaacttcacccacatgaactc
aataacctcttgtcaaaggtccttatttatctaaggagtcccagctgggacactcggatt
gctgcgggtcaagcggtggaggcaatcgtgaaaaatattccggagtggaacccggctcca
aagccaaaggaagagtcccgtgaagacctgtctccagaggactcgtcttgtgaccgcttg
aacttttaccatttcgacatctcccgcctgctcagacatggagcttcgttgcttggatct
gcaggagttgagtttgagctgcaggaagacaaaactggtgagatggatccaaaggaacgc
cttgcacgccaaaggaagctgctccagaagaagttgggcctggacatgggtgccgctatt
ggaatggacacaaacgatctgttcaatgatgaggacttagattattcgtgtcatccaggc
gggtttaaagcacacgggcataaagctacagctggctgcagctcccgcaaccatgtgact
attcaggctgctgaactgatcgactccgagttccggcctggtatgagcagccgtcagaag
aacaaagctaaaaggctggcgaaactagtggcaaagcaaaaatctagagatgtggatccc
agtgagaagagcaatgactgcctcgaaggtgaacctgaggaaaaacgcagaaaaacaacc
aatgtagtaattgaccaaccagcaacggaacataaggtcttaattgacaacgttccagat
aactctggtctcttagaggagtcacaagagtggcctctggagagcttctgtgaggagctt
tgtaacgacctcttcaatccatcatgggaggtccgacacggtgctggaacaggtctgagg
gaaatcataaagtctcacggtgctggtggagggaaactgcttggaagcagtgcagagcag
atgttgcggcagcatcaggagtggatagaggacctggtcatccggctcctctgtgtgttt
gctttggaccgctttggggactttgtttctgatgaggtggtggctcctgtgagagaaact
tgtgctcagacactcggcgtagctcttctccacatgtgtgaaaatagcgttttaatgact
gtagatgtcctcctgaagctgctgaaagaagaccagtgggaggtccggcatggaggcctt
ttggggatcaaatacgccttggctgtccgacaggatctcatctctgtgctgcttccccgg
gtgctgcctgccatcactgaaggcttacaggacctggatgatgatgtcagagctgttgct
gctgctgcccttattccagtggtggatggcctgatccagctgctgcccaacaaggtacct
tttattgtaaacacactatgggatgcgcttttggatttggacgatctcaccgcttccacc
aacagcattatgactctgttgtccttgctgctgacctttcctcacgtccgacagtgcagc
atgggtcagtcactcaccgtcctggttcctcgagtttggccgttcttacgacacaccata
tcatcagtaaggaaggctgccctggaaactctttacacgctgctgtctaaagctgatgag
agtattgcagtctggataaaccccatattacaagatatgttgcgacacatcttccaatcc
tgcattctggagagcaatgaggaaatacttgatcttatacaaaaggtgtggatggagctg
ctgtctcgggtcccccagcagctggtggttgcagccagctgtccgtggatgggtgcctgg
ctctgtctgatgatgcaggcctctcacattccaatagacctgaacatgctgctggaggtg
aaagcccgctccaaggataagactggttcaaaggcacgtcaaggagccatgcaagtgaag
gagacggttcagcagtatatagctggggctgagactgtagcagatgatccgctgaccagg
gattatgtggttttccgcgccagactcatggccgccaaattactgggagctctgtgtagg
tgcatctgtgaccctcagcttaatgctgcatcccaggagatgagaccagctgaatctttg
ggccagctgttgctctttcacctcaactccaaatcagccctgcagcggatagctgtggct
ctggttctttgtgagtgggcggcactgcagaaggattgcttcatggtgtcatcgatggtg
cagccccggcttctggctgtcctcacggagcagttgtactacgatgagattgcaattccc
ttcacacgcatgcagaatgaatgcaaacagctcatttctttgcttgctgaagtacatgta
gacctccacgatcgcctcaactgcagcgttttcactatcgaccaagccaacgaactggta
acgaccgtcttcacagagacgaccgctgctctgaatgtgaagtccaaacagtggctagca
ctggaaagtaaacggcagcaagctcagtctacggtgatggagacgaactcagaatggcag
cagctgcatctacgggtccacatgttcaccgcctgcgccgtcatcaacctggaagtgctt
ccggataaactcaaccctctggtgaggcccctcatggagactgtgaagaaagaggagaac
accctgatccaaagttacgccgcttcgttcatagccaagctgctgcagcagtgtgccagc
cgctcgccctgccccaaccctaaaatcatcaaaaacctgtgcgcttcggcatgcatggac
ccctcgactactccttcctccgcctgtcctgtacccacagcacaggaacctgctaaagga
ggtgggctggaaaaagactgtttgcatcacatagttgacaaaacccaaggaatcatcacc
ctgtaccgccaccaacgggctgcttttgcaatcacaagtaaaaggggtccaaccccaaaa
gccccaaagaccccagcgacggagcttcctcctggcagcatgatgagccccgataacgat
gagagcaagaagcagtttctcgttcaaagaagaggagcagagtttgccctaacgaccatt
gccaggcactttggggcaaacctcaacaagagtctgccgtacctgtgggacaacacggtg
ggaccactgaaggcggtggccatggaaaacctgagcatcgacaggcaggcccagctggag
aaaggcgatgctgcagctcaggaattggtcaactctctgcaagttttggaagtcatggct
ggagccatggctgctgaactacgacctttgttactggaacacctacctcatttgttcacc
tgcctgcagcacccgtacacagccgtgcggcacatggctgctcgctgtgtgggtgtgctc
agcaggatagccaccctggagaccatgaacagtttcctggagtgtgtcctccattggcta
gctgctattgatgactgcacaaagcaggagggtgccattgaagccttggcttgtgtcatg
gagcagctggatgttgatattgttccctacatcgtgctgctggttgtacccgtgctgggc
cgaatgagtgaccccactgatagtatccgttttatggccactcagtgctttgctactttg
atccgcctgctgccactagaggcaggtataccagacccaccggccatgtctgctgatttg
gtccagcagaaagtaagagagcgtcagttcctggagcagctgctggatggcaggaagctg
gagaactataagatcccggtgcccattaaagcggagctcaggaagtaccagcaggatggg
gtgaactggctggctttcctcaacaaatacaagctgcatgggatcctttgtgacgatatg
ggtctggggaagacgctgcagtccatctgcattctggctggagatcactacctcaggggt
caggaatatgccaagactaaggcagctgattgcagccccctgccctccctggtggtgtgc
ccccccacgctaacaggccactgggtggatgaggtggcaaagttctgcacaaaagagtac
ctcaacccgctgcactacactgggcctcccacggagcgaatgcggctgcagcatcaggtg
aaaaaacacaaccttgtcgtcgcttcttatgatgtggtgcggaatgacatagacttcttt
aaaaatatcaaatttaattactgtatcctggatgagggtcatgtgatcaagaatgggaaa
accaaactgtccaaagccattaaacagctagctgctaacttccgcgtcatcttatctgga
acgcccatccagaacaacgtcttggagctctggtcattgtttgacttcctgatgccgggc
ttccttgggacagaacggcagtttgccgcccggtatgggaaaccgattctggccagccgg
gacgccaaaagctcatctcgagaacaggaggcgggcgtcctcgccatggaagcgctacat
cggcaggttttgcctttccttctgaggaggatgaaggaggatgtactccaagatcttcct
cctaaaataattcaggactattactgcactcttagccccctgcaggttcagctttacgaa
gactttgcaaagtctcgagcgaaggtcaacgtggaggacagcatctctgtggcgtccaat
gaagaggaggagaaacccaaactgaaggccacgggtcacgtcttccaggcgctgcagtac
ctccgtaagctctgcaaccatccaaacttggttctgactcctcagcatccagagtacaaa
cgcatcacagagcagctggcgtctcaaaactccaatttacgcgacattcagcatgcgccc
aaactctctgctctcaaacagctgctgttggattgtggtcttggcggtggtggaggatca
gaaggagggacagaggctgtggtggctcagcaccgggtgctgatcttctgtcagctgaag
agcatgctggacatcgttgagcacgacctgctgaaacccaaactgccgacggtgacctac
ctgaggctggacggcagcgtgcccgctggccagcgtcactccatcgtctccaggtttaac
aacgacccctccattgacgtgctgctactgaccacccatgtcggtggtctgggtttgaac
ctcacaggagccgatactgtggtgtttgtggagcatgactggaaccccatgagggacctg
caagctatggatcgcgctcatagaataggacagaaacgggtggtgaacgtttacaggctg
atcacacgaggaacgctggaggagaagataatgggactgcagaaattcaagatgagcatc
gctaacacggtcatcaaccaggagaacaccagcctgcagagcatgggcaccgatcagctg
ctcaacctcttcactctggataaggacgacaagggtgacaaaggagagcagtcgtcatcg
acctcagggaaggcgtccataaagtctgtgttggacggcctcggagagctgtgggaccag
cagcagtacgactcagagtacaatctggacagcttcatgaactcgttgcactaa
DBGET
integrated database retrieval system
