Cyprinodon variegatus (sheepshead minnow): 107088713
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Entry
107088713 CDS
T06110
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107088713 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvg04121
]
107088713 (herc4)
Enzymes [BR:
cvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
107088713 (herc4)
Ubiquitin system [BR:
cvg04121
]
Ubiquitin ligases (E3)
HECT type E3
107088713 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
107088713
NCBI-ProteinID:
XP_015236546
Ensembl:
ENSCVAG00000004597
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MSGQVRSQVYPEVRDTMLCWGNASYGQLGLGGIDEEIVVVPRKCEFFHGKRVNGVGCGRR
HTAFLLDDGTVYTCGCNDLGQLGHEKSRKKPEQVGALDAQIIVALSCGESHTLALNDKGQ
VFSWGLGSDGQLGLNNFEECIRVPRNIKSLSEVQIAQVACGFWHSLALARGGQIFSWGQN
RSGQLGLGLAGQSIPTPQLVQSLQGIPFAQLSAGGAHSFALTLSGAVFGWGCNKFGQLGV
NDTNDRCFPTLLKSLRSQRVIYVSCGEDHTAVLTKEGGVFTFGAGGYGQLGHNSTNHEIN
PRKVFELMGNVVTQIACGRQHTLAFTPACGKMDSFGLGGNGQLGTRSTCNRKSPAPVKGP
WAASSAAEENDADQSCFVKRIYAGGDQSFAHYCTVNDPQDMDNMRMENLSGKICTLNEDV
VQKWLNHSAGRLPADVSNEIDLVFSSASCLNGSFLSTSHPGHFCTSSKYSGVDMNAARLL
LHRLIQQDHPKISQQVAASLEKDLIPRLTNSPPDIEALRLYLTLPECPLFSDRSNYITIT
IPFAKCVISLKEAPLKVLGNWWSTFEPMFFQRLVDLYKDVVVFLLQMHKVGIPLAEQRIF
SCFMDTALSFLEILHKVNEKAGSIIQYDKFYIHELDNLIDIRNDYVTWIQRQMYPMGRDG
VVTLCKYPFVFDAQAKTALLQTDAVIQMQMAVDQAQLQNFSSMFLPAVESVNPCLILIVR
RENIVGDTMEVLRKSKNVDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMKELLDPKYGMFR
YYEESRLIWFSHKTFEDFDLFNLIGVICGLAIYNFTIVELNFPLALYKKLLKRKPTLEDL
KELMPDVGRSLQELLDYTEDDIEDTFCLNFTITEDNYGATEVLELVPNGENINVNKSNRQ
DFVDAYVDYVFNSSVGPLFEGFYAGFHKVCGGKVLDLFQPSELQAMVIGNTNYDWTELEK
STEYKGEYWAEHPTIKLFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQPTGG
GEHYLPVAHTCFNLLDLPKYTNIETLREKLLHAIDHNQGFNLA
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacaagtacggagccaagtgtatcccgaggtgagagacaccatgctgtgttgg
ggaaatgcttcctatggacagctgggactgggtgggatcgacgaagagatcgtggttgtc
ccgcgaaagtgtgagttctttcacggtaagcgggtgaacggcgtggggtgcggccgcaga
cacacggctttcttgctggacgatggcaccgtttacacttgtggctgtaacgacttgggg
caactgggacacgagaagtccagaaagaaaccagagcaggtaggggccttagatgctcag
atcatcgtggctttgtcctgcggagagtcccacacgctcgccttaaacgacaaagggcag
gttttctcctgggggctcggttcagacggacaactgggcttgaataactttgaagaatgt
atcagagtcccgaggaacataaagagtctgtcggaggtacagatcgcccaggtagcctgt
ggcttctggcactccctggctctagcaagaggtgggcagatcttctcctggggtcagaac
cgatccggtcagctggggcttggattagcgggacaaagcattcccacacctcagctggtt
cagtccctacagggcattcctttcgctcagctgtcagcaggtggcgctcacagcttcgcg
ctcacgctctctggagccgtgttcggttggggctgcaacaagttcggccagctgggtgtc
aacgacaccaatgatcgctgtttcccaaccctcctgaagtcattaagatcacagagggtg
atctatgtctcctgtggagaagatcacacagccgtgctcaccaaggaaggaggtgtgttt
acctttggagcagggggatacggacagctggggcataactctaccaaccatgaaatcaac
cccaggaaggtgtttgagctcatggggaacgtcgtcacacagattgcatgtgggaggcag
cacacgctggctttcactcctgcctgtgggaagatggattcattcggattggggggtaac
gggcagctgggtactcgctccacctgcaacaggaaaagcccagcccctgtcaaaggcccc
tgggctgcctccagtgctgcagaggaaaatgacgctgatcagagctgcttcgtcaaaagg
atttatgctggaggagatcagagctttgctcattattgcactgttaatgaccctcaggat
atggacaatatgagaatggagaacctttcaggaaagatttgcaccctgaatgaggacgtt
gtacagaaatggctgaatcactccgcgggaagactcccagcagacgtatccaatgagatc
gacctggtgttctcctctgcaagctgcctcaacggatcgtttttgtcaacgagtcatcca
ggtcacttctgtaccagcagtaaatactctggggtggatatgaacgcggctcgcctcctt
ctccacagactgattcaacaagaccatccaaagatttcccagcaggttgctgccagtctg
gagaaggacctgattcccagattaaccaactctcctccagacatcgaagctctgaggctc
tacctaacgctaccagaatgcccgctcttcagcgaccgcagcaattacatcaccatcact
atcccctttgccaaatgtgtcatcagtttgaaagaggctccgctgaaggtgctgggaaac
tggtggtccaccttcgagcccatgttcttccagcgcctggtggatctgtacaaagatgta
gtggtgttcctgctccagatgcacaaggtgggcattcctctggccgagcagaggatcttc
tcctgcttcatggacacggcactcagcttcctggagattctgcacaaggtgaacgagaaa
gcaggaagcatcatccagtacgataagttctacattcatgagctggataatctgatagac
atcagaaacgactacgtcacgtggatccagaggcaaatgtacccaatgggtcgagacggc
gtggtgactctctgcaaataccccttcgtattcgacgctcaggcgaaaacggcgctgctg
cagacagacgccgtcattcagatgcagatggcggtggatcaggcccagctgcagaacttc
agctccatgttcctgccagccgtcgaatccgtcaacccctgtctcatcctgatcgttcgc
agggaaaacatcgttggagacacaatggaggtcctcaggaaatccaagaatgtcgactac
aagaaaccgctcaaggttatcttcgtgggagaagatgcagtcgatgctggaggcgtcaga
aaggagttcttcctcctgatcatgaaagagctgctggatcccaaatatgggatgtttcgc
tactacgaggaatccagactcatctggttttcacacaagaccttcgaggactttgacttg
tttaacctcattggggtcatctgcggtctggccatctacaatttcaccatcgtggagctc
aacttcccgctggcgctttacaagaagctcctgaagaggaaaccgacgctggaagacctg
aaggagctaatgccagacgtaggaaggagcctgcaggaactactcgactacacggaggat
gacatagaagacaccttctgtttgaatttcaccatcacggaggataactacggcgccacc
gaggtcttagaattggtaccaaacggtgagaacatcaatgtcaataagtcgaaccggcag
gactttgtggacgcctacgtcgactacgtcttcaactcctccgtagggccgctgttcgag
ggcttctacgcaggcttccacaaagtgtgtggcggaaaagttttagatctgttccagccc
agcgaactccaagctatggtcatcggaaacaccaactatgactggacagagctggaaaag
agcactgaatataaaggagaatactgggctgaacatccaaccataaagctcttctgggag
gtcttccatgagcttccattggaaaagaaaaagcagtttctcttgttcctcacaggaagc
gaccgcatccccatcctgggcatgaagagcctgaagctggtgatccagcccaccggtgga
ggcgagcattacctacctgtagcccacacctgcttcaacctcttagaccttcccaaatac
accaatatagaaacactcagagagaagcttctacacgccatagatcacaatcaaggcttt
aacctggcctga
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integrated database retrieval system
