Cyprinodon variegatus (sheepshead minnow): 107088715
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Entry
107088715 CDS
T06110
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107088715 (rc3h2)
04121 Ubiquitin system [BR:
cvg04121
]
107088715 (rc3h2)
Transcription factors [BR:
cvg03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107088715 (rc3h2)
Ubiquitin system [BR:
cvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107088715 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
Prok-RING_4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
107088715
NCBI-ProteinID:
XP_015236547
Ensembl:
ENSCVAG00000012202
UniProt:
A0A3Q2E331
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAEVPEVQPVSLSSAADVEHYEICRLCVEELALYLKPISGAKGVAN
LSSSVLSRPMQRKLVTLVNCQLVEEEGRVRVVRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPSNLTSLRPHLELLANI
DHNPDAPAPSWAELESVMLAVKFVVHGLVEFVQNFSKKSHETPQPQANSKYKTSMCRDLR
QQGGCPRGTSCTFAHTQDELEKFRLRNKKSGSVVRQFPLANKGIKDTEENMGSTTEVGSS
LTNPLLISRGSGGVEELKRVVTNGTNGTNGPTRTPSGSTELKSLSPPRTPVSLSSASSPL
STPGGADVSTPLPRHGQFILSSPHPSQGSEMYYQEPHPGYDKAHFQQSSGSFYPSTLHPP
HKTCMARFLRSSNVQESALPPSAGVSSYPNDHQPPHPASSPSSGFPPRDQMGAPTFHHHP
GQGQYGHLGPSHSVYAPLYDSRRLWRPQLYHREDARSNSLPPEVLHSSVYQPPLRERFNS
LDSNYCSGAEHRTGLHRDYGRVPLGYEDLFRRKQEHWTHIHHHHRPSQSSPIFTAEFGPE
HMENGGGQCMGCRFRGEESLARYSPWSCGTAGPSLSPFEPEPLKPTPAHSHSHSERPELD
CNEGGQGVVSGTGKRWLHSLDHYRRLKEEDPIIPFSEAPIISKWGAISRASRTGYHTTDP
VQATARQGSASTTAINFKDYNHHFDHSDYRWSSRGSDSSSHSSFLESEHLCASELNGRRS
SISSGEKIVSEQLQDHQTSFSREPNQTENESDPDRDIELELRALDMEDSEHHEIKSQEGL
DRPSPQSQDASHLLPPPCSSPLCPSPVEERSKSESLLTEKMDALQLKKMAFRKSLSPIGL
GSGGLGIRKLVLRTGPHQLGDTSTKAHPETPGTEMLLN
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcagcccagtggacagagttcctgtcctgtcccatctgctacaatgag
ttcgacagcagtggccaccagccgatcagcctgggctgctcccacactgtgtgcaagacg
tgcttgcacaagctgcaccgcaaggcctgccccttcgatcagacccccatcagcacagac
atcgacctgctgccggtcaactgcgccctgctgcagctggttggagcagaggtcccagaa
gttcagcctgtgagcctaagcagtgcagctgatgttgagcactatgagatctgccgattg
tgtgtagaagagctggctctctacttgaaaccgatcagtggtgccaaaggtgtggctaac
ctgagttcgagcgtgctcagcagacccatgcagaggaagctggtgaccctggtgaactgc
cagctggtggaagaggagggtcgtgtccgcgtggttcgggctgcccgctctctgggggaa
cggactgtaactgagctcatcctgcagcaccagaacccccagcagctctctgccaatctc
tgggcagcagtgagggcacgtggctgtcagtttctgggtcccgcgatgcaagaagatgcg
ctgaagctggttttactggctctggaggacggttctgctctctccaggaaggtgctggtt
ttgtttgtggtccagaagctggaggcccggttcccccaggcgtccaaaacaagcattggc
catgtggtgcaactactctacagggcctcctgttttaaggtgactaagcgtgatgaggac
tcctccctgatgcagctgaaggaggagtttcggacgtatgaggcgcttcggagagaacat
gatgctcagattgtccacattgccatggaggctggccttcgaatctctcctgagcagtgg
tcctctctcttatatggagacctggttcacaaatcacacatgcagtccataattgacaag
ttgcagtctccagaatcatttgcaaagagcgtccaggaactgacgattgttctccagagg
acaggagacccttccaacctaaccagtcttagaccacacctggagctcctggccaacata
gatcacaaccctgatgccccagctccatcatgggcagagctggaaagtgtgatgctggct
gtaaagtttgtggttcacggtctggtggagttcgtccagaactttagcaagaagagccat
gaaactccacagccccaagccaacagtaaatataagacgagcatgtgcagagaccttcgt
caacagggaggatgccccagaggaaccagctgcacatttgcacacacccaggatgaacta
gagaaattcaggctgaggaacaagaagagcggcagtgtggttcgccaatttcctctggcc
aataaaggcatcaaagatacagaggaaaacatgggttctacaacagaagtaggttccagc
ctgacaaacccgctgctgatctccagagggtctggaggtgtggaagaactgaaaagggtt
gttacgaatggaaccaatgggactaacggccctaccagaaccccatcggggtcaacagag
ctgaagtccctgtctccccccagaactccagtcagcctctcgtcagcttcgtctccattg
agcactcctggtggtgctgatgtcagtactcctctgcctcgacatggccaattcatcctc
tcctcacctcacccctctcaggggtcagagatgtactatcaggagccccaccctggttac
gacaaggcacactttcagcaaagctcaggttcattctatccatctactcttcaccctcca
cacaaaacatgcatggctcgcttcctccggtcctctaacgtccaggaatcggccctgcct
ccttctgcgggtgtttcctcgtacccaaatgaccatcagccacctcacccagcctcatcc
ccttcttcaggatttcctcctagagatcaaatgggagcccccaccttccatcaccatcca
ggacagggacagtatggacatttgggaccttctcacagtgtttatgctcctctctatgac
agcaggagactatggagacctcagctgtaccacagagaggatgccaggagtaactcactg
cctccggaggttctgcactcctcagtctaccagcctccactcagggagagattcaactct
ctagacagcaactactgctctggagcggagcatcgcaccgggctgcacagggactatggg
cgcgttcctctgggatatgaggatctgttcagacggaagcaggaacactggactcacatt
caccaccatcacagaccctcccaatcttcccccatcttcactgctgagtttgggccagag
catatggaaaacggtggaggtcagtgcatgggatgtaggttcaggggtgaggaaagtttg
gcacgttattctccatggtcctgcggcacagccgggcccagcttaagcccctttgagcct
gagcccctcaaacccaccccagctcactcccattcccactcggagcgtccggagctagac
tgtaacgaaggaggacaaggcgttgttagcggcactgggaaacgatggctacactcgttg
gatcactatcgacgtttgaaagaagaagatcctattattcccttcagtgaggcgcccatt
atctcaaagtggggggccatctctagggcatcccgcacaggctaccataccaccgaccct
gtacaagccacggcccgccagggcagcgccagcaccacggccataaacttcaaagattac
aaccaccactttgatcacagtgactataggtggagctccagaggatcagactcctctagc
cattccagtttccttgagagtgagcatctttgtgcgtcggagctgaatggccgccggtct
tcgattagcagcggagagaaaattgtgtcggagcagcttcaggatcatcagacctccttc
agccgggaaccaaaccaaacggaaaatgagtccgatccggatcgagacatcgagctcgaa
ctgcgagctctggacatggaggattcagaacaccacgagattaagtctcaggagggttta
gatcggcccagccctcagtctcaggatgcttcccacctcctccctcctccctgctcctct
cctctgtgcccctcccctgtagaggaacgcagcaaatcagaaagccttctgactgagaaa
atggatgctctccagctaaaaaagatggctttcaggaaatctctttctcctattgggctg
ggatcaggaggtctgggcatcaggaagctcgtactacgaactggacctcatcaactgggc
gacacttccaccaaggctcatccagaaacccctgggacagagatgctgcttaattaa
DBGET
integrated database retrieval system
