Cyprinodon variegatus (sheepshead minnow): 107088953
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Entry
107088953 CDS
T06110
Symbol
loxhd1
Name
(RefSeq) lipoxygenase homology domain-containing protein 1 isoform X1
KO
K24822
lipoxygenase homology domain-containing protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cvg03037
]
107088953 (loxhd1)
04990 Domain-containing proteins not elsewhere classified [BR:
cvg04990
]
107088953 (loxhd1)
Cilium and associated proteins [BR:
cvg03037
]
Other cilia and associated proteins
Stereociliary proteins
107088953 (loxhd1)
Domain-containing proteins not elsewhere classified [BR:
cvg04990
]
Other domain-containing proteins
Others
107088953 (loxhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PLAT
ATS3
DUF7755
Motif
Other DBs
NCBI-GeneID:
107088953
NCBI-ProteinID:
XP_015236913
LinkDB
All DBs
Position
Unknown
AA seq
2053 aa
AA seq
DB search
MSASWFLDRVVVTDMIRPHLRFYFPCNNWLSREEGDNLFVRDLLGSLNPMDVPKLNKYLV
SVFTADMKGSGTDADVFLNIFGEYGDTGERRLDSDKDNFERGSEDKFTIETPNLGRLRKI
TIGHNNRGSSAGWFLDKVVIDDMGNKEVYEFPVNRWFAMDEDDGKIQRDVLVGSMQPMGI
IYNVQVMTGDIRGAGTNSKIHMVMHGAKGLKNSGKIFLEGGAFERALIDIFNVEICELIS
PLSRITIGHDNGAVGAGWYCEKVVIYCPFTGIEQTFPCGMWLDEDEADGLIERELYEMVS
LRQKKQKKYPWSLWIWTSDIKGAGTDAQVFLQIYGEKGKSDEIKLENNSDSFEQGQVDKF
MIEMPDIGRLLKVRIWHEKRNPFAGWHLAKVTLLKTLTMDKYSFECGRWLDINEDDNEIV
RELPATGALIEEPLPLIKYRVTICTGNVSGSGTDASVFLSIIGDLGDTGERLMFMSKNNV
NKFEKGNHDEFLIESVFLGQVRRVRVGHDGRGGGCGWYLDKVLVREEGQPESSATEFPCF
RWLDRNEDDGQIVRELVPAGDGVRLFNVSYHIAIKTGSVSGASSDSRVFVKLYGEKGDTE
KVILAVSDNDLRNYFETARTDIFTLDTYDIGKINRLLIGHTNEGLRAGWFLDSVQISVPV
HGMQYMFPSHRWLCKDEADGKVEVEIYPSEVLEIEKLINYEITVVTGDVRSAGTNANVFC
QIYGEEGKTEILALKSRSNNFERGTTEIFKIEALDVGKIYKIRVFHDGKGIGDGWFLELV
DIKRLTMAMVQIEVKKEETTKKDKKKDKKKKKKEEEEVEIIEQLQEVVQTFTFPCNRWLA
RDEEDGEIVVELLTEDDEELEINSYEVYVYTGTMWGAGTDAKVYITIYGETGDTGERWLR
KSNHLNKFEKGQEDVFSLTAVDLGVLKKLRIRHDNSQASAGWFLDRVEIVDTKDDTTYFF
PCKRWLAVDEDDGQLARELVPVDEAFMKKGDEDEDESEATLGLEQKAMSTTYTVRIKTGD
KKYAGTDANVFMTLFGTKDDTGIITLKASKTHRNKFERGMIDEFTVEAVDLGPLTKLRIG
HDNRGGGSAGWFLDWVEIDAQSVGQKLRFPCGRWLDRGEDDGAIVRDLFPNPLQTEFYTP
FVPYEIKTFTSDMFGAGTNADVFIVLYGKDGVCTQQKSLCVNKRERRMYFERGAEDMFIV
ELEDVGDVIEKIRIGHDNRGVNPGWHLDRVEIRRLLRKGKGSETIIFPCECWLAKSEDDG
ETIRELQPSDIITEKLARDGSLKVTEVEVEDALETHTYNVSVMTGDVNGAGTDANVFLTI
YGDLGDTGERKLSKSETNSNKFERGSVDKFTIEAVDLGQVFKIKIRHDNSMMSPDWYLDQ
VEVLDIDTEEVYLFLCERWLSKKREDRLIERVFYVKGYEGVRESLKSKKTPTLAVKSVDS
NMNKKSKKKREEEMVLPIIPYHITICTGLERDASTTSRAYVIIIGVNHTQTERLWLDLPD
GRKGFRAGSLENFEVHGSDVGEIKRVELGHDGATPESCWLVDELAAAVPTKGVKYIFACK
CWLAKDRGDGLTSRVFNVLDAEAIAISQKLIYEITVVTGDVQNAGTDTKIFMSVFGANGS
TEEILLQKNEDRFERGQEDTFNVEIDDIAPLRKMRLRIDGSGSRPDWFLDKVIMRNLSTE
EVSVFTYEEWLSKTRGPKRTMICEMPAVVEEEVMVELTTYIIQVKTSDVAGAGTDANVWV
IVFGENGDTGTLALKESVKSNKFERKQVDTFRFPEILSLGDLSKVRVWHDNTGPAPGWHL
EHIDVKDEFMDKTFRFPCDRWLSKKDDDGQIMRELACANNDYLDLNEKTKYEICVTTGDA
EETKENAWIVLEGKKCRSKEFVMENSSKKKRFLRYIFHCNALIPLSPKRDDHLTFECTKT
IESFASKARSLVPVKYEIIIITGDEKGAGTDANVFITIYGSNGDSGSRQLRQRFRNLFER
GQTDRFVVEMLDMGDLQRVRVEHDNSGLCPGWLLERVEITNTANGVTTIFHCGKWLDTKR
ADGQIARVVYPKY
NT seq
6162 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccagctggttcttggacagggtggtggtaactgacatgatccggccccatctg
cgcttctatttcccctgcaacaactggctgagccgggaagagggtgacaacctgtttgtc
agggatctacttggaagcctaaaccctatggatgtcccaaaattgaataaatatttggtg
agtgtttttactgctgatatgaagggaagcgggacagatgctgatgtcttccttaatatc
tttggagaatatggtgacacaggggaaagacgactggatagtgacaaagacaactttgaa
cgtggttcagaggacaagtttacaatagagactcctaacctaggaaggctaagaaaaatc
accattggtcacaacaaccgaggttcctcagctggatggtttctagacaaggtggtgata
gatgatatgggcaataaagaagtgtacgagtttcctgtgaaccgctggtttgccatggat
gaagatgatggcaaaatacagagagatgttttagttggatcaatgcaaccaatgggaatt
atatacaatgtccaagtaatgactggagatataaggggagcaggaaccaactctaagatc
cacatggtcatgcatggtgccaagggcttaaaaaacagtggcaaaatctttctagagggg
ggtgcttttgaaagagctctcattgacattttcaatgtagagatctgtgaactgatcagc
ccgctgagcaggatcaccattggtcacgataacggtgctgtaggtgctgggtggtactgt
gaaaaggtggtgatatactgtccgttcacaggcattgagcaaacatttccatgtgggatg
tggctggatgaggatgaggcggatgggcttattgagagggagctctatgagatggtctct
cttaggcagaaaaaacagaaaaagtacccatggtcattgtggatttggacctcagacata
aaaggtgctggcacagatgcccaggtgtttctccagatctatggagagaagggaaagtca
gatgagatcaaacttgaaaacaattcagacagttttgaacaaggtcaagttgataaattc
atgattgaaatgccggacattggaagattgctaaaagtacggatctggcatgagaagaga
aatccatttgctggctggcatttagcaaaggtcactttgctcaagactctaacgatggac
aaatattcttttgaatgtggacgctggctggacatcaatgaagatgacaatgagattgtc
cgagagctaccagccacaggagcactcattgaagagcctctgcccttgataaaatatcgg
gtcacaatctgcactggtaacgtcagtggtagtggcactgatgccagcgtattcctcagt
atcattggggacctgggggatacgggggagcgtcttatgtttatgagtaaaaacaatgtc
aacaagtttgaaaagggaaatcatgatgagtttcttatagagtcagtcttcctgggtcag
gtgcggagagtccgagttggtcatgatggccgtggtggaggctgtggttggtatcttgat
aaggtgttggtcagagaagaaggacaacctgagtcttctgccacagagtttccatgtttt
agatggctagatcgcaatgaggatgatggacaaatagtccgtgagttggttccagctgga
gatggggtgcgtctttttaatgtcagctaccacattgcaatcaagacgggcagtgtcagc
ggtgccagttctgactccagagtgttcgtgaagctgtatggggagaaaggtgacactgaa
aaagtgatcctggccgtctccgacaatgacctcaggaactactttgagacggcacgaact
gacattttcacccttgacacttacgacattggaaagattaaccgtcttctgattggtcac
acaaatgaaggattacgagctggatggtttctcgacagtgtgcagatttctgtgccggta
catgggatgcaatacatgttcccaagccaccgctggctttgcaaagatgaggcagatgga
aaagtagaggttgaaatttaccctagtgaggtcttggaaattgaaaaattaatcaactac
gaaataacagtggtcactggtgatgtgcgttcagccggaaccaatgccaacgtcttttgt
cagatatacggagaagaaggaaaaaccgaaatcctcgcattgaaaagccgctccaacaac
tttgaacgtggcaccactgaaatctttaagattgaagctctggatgtagggaaaatctat
aagataagagtcttccacgatggaaagggcattggagatggatggttcctggagctggtg
gacatcaaaagactgacgatggcaatggtgcaaattgaggtgaaaaaagaggagacaaca
aagaaagacaagaagaaggacaagaaaaagaaaaagaaagaagaagaggaggtggagata
attgagcagctccaggaagtggtgcaaacatttactttcccttgtaaccgctggctggct
cgggatgaggaggatggggagattgtggttgaactgctgacagaggatgatgaggaattg
gagataaactcctatgaagtttatgtatacactgggacaatgtggggggctgggactgat
gccaaagtctacatcactatttacggagagactggtgatacaggagagcggtggctcagg
aaatccaatcacctgaataaatttgagaaaggacaggaggatgttttcagcctgacagca
gtcgatctcggggtcttgaagaagctcaggatccgacatgacaacagccaggccagtgct
ggctggtttttggacagagtggaaattgtagacaccaaagacgacactacgtattttttc
ccatgtaaacggtggcttgctgttgatgaagatgatgggcagcttgctagagagctggtc
cctgtggatgaagccttcatgaagaagggggatgaagatgaagacgagtctgaggcaact
cttggtttggaacaaaaagccatgtccacaacatacacagtaagaataaaaacaggtgac
aagaaatatgcaggaacagatgccaatgtgttcatgaccctgtttggcaccaaagatgac
acaggcataattactctgaaggcatcaaagactcatagaaataagtttgagcggggcatg
attgatgaatttacagtggaagctgtggaccttggacccttgacaaagctgcgcattgga
catgacaaccgtggcggaggatctgcagggtggttccttgactgggtagagattgacgcc
cagtctgttggacagaagttacgctttccctgtggccgctggttggacagaggagaagat
gatggggccatcgtcagggatctttttcctaaccctcttcagacagagttttacacacca
tttgtcccttatgagataaagaccttcacaagcgatatgtttggagctggaacaaacgca
gacgtgtttattgttctgtatggaaaagatggagtgtgcactcagcagaagtctctgtgt
gtcaacaagagggagaggagaatgtactttgaaagaggagctgaagacatgtttattgtt
gaattagaagatgtgggggatgtaattgagaagatccgcattggccatgacaaccggggg
gttaacccaggctggcacctggacagagtggagattagacgcctgcttaggaagggaaag
gggtcagagactatcatcttcccatgtgagtgctggctcgccaagtcagaagacgatgga
gaaacaatccgagagctacagccttctgacatcattactgagaaacttgctagagatggc
agcctgaaagtaactgaggtggaagtggaagatgccttagagactcacacatacaatgtc
tcagtgatgacgggtgatgtaaacggtgctggaaccgatgccaatgtcttcctgacaatt
tatggagaccttggggacactggagagagaaagctgagcaagtccgaaacaaacagcaac
aagttcgaacgtggatctgtggataagttcacaatagaagcagtggacctcggccaggtt
tttaagataaaaatccgccatgataacagcatgatgagtcctgattggtacttggaccaa
gtggaggtgttggacattgatacagaggaggtctacttgttcttatgtgagcgttggctc
tccaaaaagagggaggataggctcatagaaagagtcttctatgtgaagggttatgaaggt
gtcagagagagcttgaagagtaaaaagactcctaccttggctgtgaagagtgttgacagt
aatatgaacaaaaagagcaagaaaaagagagaggaagaaatggtgttaccaatcatacca
taccacatcaccatctgcactgggctggagcgtgacgccagcaccaccagcagggcttat
gtgatcataattggagtcaatcacacccagaccgagaggctgtggcttgacctgcctgat
gggagaaagggcttccgggctggctctttagagaacttcgaagtccatggttcagatgtg
ggggagattaaaagggtggagcttggccatgatggggccactccggagagctgctggctc
gttgatgagctggctgctgctgtgccaaccaaaggggtcaaatatatctttgcatgcaag
tgctggctggccaaagatcgaggagatggcttgacttctagagtattcaatgtgctggat
gcagaagccattgctatctctcaaaagcttatatatgagattacagttgttactggagat
gtgcagaatgctggaacagacaccaagatcttcatgtctgtgtttggtgccaacggcagc
acagaagagattttgctccagaagaatgaggacagatttgagcgcggtcaggaagacact
ttcaacgtggagattgatgacatcgctccactcaggaaaatgaggcttcgtattgatggc
tcaggcagtcgaccagactggtttcttgacaaggtgatcatgcgtaacctgagcacagag
gaggtgtctgtgtttacctatgaggaatggctgtccaaaactcgtggacctaagaggaca
atgatctgcgagatgcctgctgtggtggaagaggaggtgatggtggagctgaccacttac
atcatccaggtcaagacaagtgatgtcgcaggggccggcaccgatgccaatgtgtgggtc
attgtttttggagagaatggtgacacggggacactagcactgaaggagtccgttaagtcc
aacaaatttgagcgtaagcaggtggacaccttccgattccctgaaatcctcagcctggga
gacctctccaaagtcagagtttggcacgataacacaggtcctgcaccaggttggcacttg
gagcacattgatgtgaaggatgagtttatggacaaaacattccggtttccatgtgaccgc
tggctttccaagaaggacgacgatgggcagataatgagagagctggcctgtgccaacaat
gactatttagacctgaacgaaaagactaagtatgaaatttgcgttactactggagacgca
gaagaaaccaaggagaatgcatggattgtactcgaggggaagaagtgccgatctaaagag
tttgtaatggagaactcctcaaagaagaagaggtttttacggtacatcttccactgcaat
gcccttatcccactctctccaaagagagatgatcacctgacctttgagtgcacaaagacc
attgagagttttgcaagcaaagctcgtagcttggtacccgtcaagtacgaaatcatcatc
atcacaggtgatgaaaagggagcaggaacagatgccaatgtttttatcaccatctacggc
tccaacggagattcaggcagccggcaactgcggcagaggtttcgcaacctctttgaacgc
gggcagacggatcggtttgtggtagaaatgctggacatgggcgatttgcaaagagtacga
gtggagcatgacaactctggcctctgccccgggtggttgctggagagggtggaaatcacc
aacacagccaatggtgtcaccacaattttccactgtggaaaatggctggacaccaagaga
gcggacggacagattgctagagtggtctacccaaaatactga
DBGET
integrated database retrieval system
