Cyprinodon variegatus (sheepshead minnow): 107088972
Help
Entry
107088972 CDS
T06110
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107088972 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107088972 (skiv2l2)
03041 Spliceosome [BR:
cvg03041
]
107088972 (skiv2l2)
03009 Ribosome biogenesis [BR:
cvg03009
]
107088972 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
cvg03016
]
107088972 (skiv2l2)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107088972 (skiv2l2)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107088972 (skiv2l2)
Spliceosome [BR:
cvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107088972 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
107088972 (skiv2l2)
Ribosome biogenesis [BR:
cvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
107088972 (skiv2l2)
Transfer RNA biogenesis [BR:
cvg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107088972 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
107088972
NCBI-ProteinID:
XP_015236934
Ensembl:
ENSCVAG00000004556
UniProt:
A0A3Q2FHD5
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MADPFGEGLFSVFDDEQQSSSSKKTPTSVSTETGRSADKYGNEGDVGPSVRVKRNADNDC
GEEVVFGKKPRQETISSSDLNLSEFMPQVKVDQVETVEGCSHEVALPADEEYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGGSGGGKWDRGRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNNDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKLEEQYHTIDIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNE
DADFGWGVVVNFSKKTNTKALADSEPLYVVEVLLHCSKESVKDSATEAAKPAAPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYTHPLHSDPNLESVYSLCERKAQIATEVRTAKRELKKARTVL
QMDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccctttggtgaaggactgttcagcgtgtttgacgatgagcaacaaagctct
tctagcaaaaagacacccacgagcgtgtctacagaaacggggaggtctgcagataaatac
ggtaatgaaggggatgtcggtccatctgttcgggtcaagaggaatgcggacaatgactgc
ggagaagaggtggtgtttgggaaaaaaccccgccaggagacgatctcatccagtgacctg
aatctttcagaatttatgcctcaagtgaaggtggaccaggtggaaacagtggaaggatgc
tcacatgaggttgctctgcctgctgatgaagaatataaacctctcaaaccaagagtggga
aaagcagctaaggagtaccctttcatactggatcccttccagcgtgaggctatcctgtgt
atcgacaacaaccagtctgttcttgtgtctgcacacacctcagcagggaaaacagtttgt
gcagagtatgccatcgctctggctcttagagagaagcagagggtcatcttcaccagcccc
atcaaagccctctctaaccagaaatacagagagatgtatgaagagttccaggacgtggga
ttgatgactggtgatgttaccatcaaccctaccgcctcctgtcttgtcatgacaacagag
attctaaggagcatgctgtatcgaggatcggagatcatgagggaggtggcatgggtcatc
tttgatgagatccattacatgagagatgcagagcgtggggttgtttgggaagaaaccatc
atccttcttcctgataatgtgcattatgtattcctgtcggctaccatcccgaacgccaaa
cagtttgctgaatggatctgccatttacacaagcagccttgtcatgtagtttataccgac
taccgtcccactccgttgcaacattatatttttccagcagggggcgatggactccacctg
gtagtcgatgagaacggcgacttcagggaagataactttaacacagcgatgcaggttcta
agagatgcgggagactctgggggtggaagtggaggtggcaagtgggatcgaggacgaaag
ggaggcactaagggaccatccagtgtttttaagatagtgaaaatgatcatggagaggaac
ttccagccagtgatcattttcagcttcagtaagaaagactgtgaggcctacgccctgcag
gtgtcaaagctggattttaataacgatgatgagaagcgtctggttgaagaagtgtttaac
aacgcagtggactgtctttcagatgaggacaagaaattgcctcaggtggagcatgtgttg
ccactgttaaagagaggaataggcatccatcatggaggcctattgcccatcctgaaagag
accatcgagatccttttttctgagggtctgttaaaggccttgtttgctacagagactttc
gccatgggcatcaacatgccagctcgcaccgtgctcttcaccagcgctcgcaagttcgat
ggcaagagtcatcgctttattacatcaggtgagtacatccagatgtctggccgagctgga
aggagaggaatggatgacagaggaatagttattttcatggtggatgagaagatgagtcca
gctgtgggcaaacagctactgaagggctcagcagaccctttgaacagtgccttccatcta
acctacaatatggtgctgaacctgctgcgtgtagaggagatcaacccagagtatatgctc
gagaagtcattctaccagtttcagcactacagggctttgcctggcgtggttgagaaaatt
aagaagttagaggagcagtaccacaccattgatattcccaatgaggagagtgtggtgact
tactttaagatcaggcagcagctggccaagctgggaaaagagatacaggaattcatccac
aaacccaaatactgcttgcccttcttacagcctgggcgacttgtgaaggtgaaaaacgag
gatgctgattttggctggggggtggtcgttaacttcagcaagaaaacaaatacaaaggcc
ctcgcagactctgagccgctttatgtggtggaggttttgcttcactgtagtaaggaaagt
gtgaaagactctgcaactgaggcggccaagcctgctgcaccaggggagactggagagatg
caggtggttccagtgatgctccatctcctcacttcaatcagctcggttcgtctttacatc
cccaaagatctcaggccttttgacaacagacaactcatgcttaagtccatacaggaggtg
cagaaacgattcccagatggcgttcctttacttgaccccatagatgacatgggtatcaaa
gacccggccctgaagaaagtgattcagaaagtggaggcctttgaacaccggatgtacaca
cacccactccacagtgacccgaacttagaatcagtctactccctctgtgagaggaaagca
cagattgcgactgaggttcgaaccgccaaacgggagctgaagaaagctcggaccgtcctg
cagatggacgagctgaagtgccgaaagcgagttcttcgaaggctaggcttcgccagcccc
tctgacgtcattgaaatgaaaggcagagtcgcctgtgaaatcagcagcgctgatgagctc
ctgctgacagagatggtgtttaatggcctcttcaacgacctgactgtggagcaagccact
gccctgctgtcctgcttcgtcttccaagagaacgccagtgagatgccaaaactaaccgaa
cagctggctgcaccactcagacaaatgcaggagtgtgcaaagcgcatcgccaaagtgtct
gcagacgccaagctggaggttgatgaggagacttacctgaaccagttcaaaccccacttg
atggatgtagtctttgcttgggccaacggggccacattcgctcagatctgcaagatgact
gacgtctttgagggaagcataattcgttgcatgcgacgtctggaagaggtgctgcgacag
atgtgctctgcagccaaagccattggtaacactgaattggagaacaagtttgcagaagga
ataacgaagattaagagagacatagtctttgctgccagtctctatttatag
DBGET
integrated database retrieval system
