Cyprinodon variegatus (sheepshead minnow): 107089013
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Entry
107089013 CDS
T06110
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107089013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107089013
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107089013
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107089013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4140
Motif
Other DBs
NCBI-GeneID:
107089013
NCBI-ProteinID:
XP_015237005
Ensembl:
ENSCVAG00000022122
UniProt:
A0A3Q2EIM4
LinkDB
All DBs
Position
Unknown
AA seq
905 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIENRKLIETQMERFKIVERETKTKAYSKEGLGLIQKVDPAQKE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDSLQVEAIRKIKDDVEYYIDSSQDPDFEENDYIYDDLDLDEFPQPLLA
TSPPGPSHLEDEIFQNSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSLSLSSSSSSSSSSSSASGLTSSSLVSVAGGGIGSAGGGHQSAVGGPFSNTSAG
SYSNATQQPPHPSVQQQQQAKNAASSSAPISNSSSSTNSHSTSSASSPPSTQGLFPSNSQ
PFTPSGSTATSNSLGLNLGSSLGKGSISSSPGLSGMPASLSTVVGLLSSPTPAPYAQAAA
AGTGSSSLPGSLGGISSTSTNSGVGVIGSGSMAVGGPTSSQGGVLGTTPVVGSVGSGILG
LGSGQSVGQGSSMGSQSPVGSLAPGGGLGVIGSNGGSLGSIGSGVGGGSSSLSVQPPSRQ
KQSNSTAGHSALVPDSTTDSTLNSASQSQSSQSSSLTSTANQLKDTGPSLLSSMGLSSTS
PSPAAYSEAKASGGSLQNGPLSYSLSSESIKEPLSRSMAERAAPSSGIEGDVSSLHLTSD
NFPSSTTAPSGPPSAPQSSLSEVSILPSLGVCPLGPVPLSKDQLYQQAMQEATWTHMPHP
SDSERIRQYLMRNPCPTPPFHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAA
KALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWGQRKKEGFTFEYRYLE
DRDLQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggggaaatagatcgatgtctgaaaaaagtagcggag
ggagtggagcagtttgaagacatttggcaaaagcttcacaatgcagccaatgcaaaccag
aaggagaaatatgaagcagacctcaagaaagagattaaaaagctccagcgccttcgagac
cagattaaaacgtgggtggcatccaacgagatcaaagacaaaaggcagctaatagagaac
cgcaaactcatagaaacgcaaatggagcgctttaaaatagttgaaagagaaaccaagacg
aaagcgtactcgaaagaaggactcggcctgatccagaaggtggacccggcgcagaaggag
aaggaggaggtcggcacgtggctaacgaacacgatagacacgttgaacatgcaggtggac
cagtttgagagcgaggtggagtctctttcagtccagaccaggaagaagaaaggagacaag
gagaagcaggatcggatcgaggagctgaagaagtttattgagaagcatcggtaccacatc
cgaatgctggagacgatactgagaatgctggacaatgattcactgcaggtcgaagccata
aggaagatcaaggatgatgtcgagtactacatcgactcatcgcaggatccagacttcgag
gagaacgattatatatacgatgacctcgacctggatgaattccctcaacctttgctggcc
acctccccaccaggaccctcgcacttggaggacgagatcttccagaactccagcagcaca
ccgacctccaccacctcatcctcaccaattcctccttcacctgccacttgcactacagag
aattcagaagatgacaagaagaggggacgttcaacagacagtgaagtcagtcagtctcca
gtgaagaatggaaatccctccttgtcgttatcttcctcctcctcttcctcctcctcgtct
tcctccgcctcggggctcacctcgtcctctctggtctctgttgctggcggaggtatcggc
agcgcgggcggcggtcatcaaagcgccgtagggggtcctttctccaacacttcagctggc
agctacagtaacgccacgcagcagccgcctcacccctctgtgcagcagcagcagcaggcc
aaaaacgcagcgagctcttctgctcccatctcaaactccagctcctccaccaacagccac
agcacctcctcagcgtcctctccacccagcacacagggcctcttcccctcgaactcccag
cctttcacgccgtcgggttctacggcgacctcaaacagcctcggcctcaacctggggtcc
tctctggggaaaggctccatctccagcagccccggcttgtcagggatgccggcatctctg
agcacagtggtgggccttctgtcgagccccaccccagccccctacgctcaggcggccgcc
gcaggcaccggcagctccagcttgccaggctctctgggcggaatcagctccacatcgacc
aacagcggggtgggtgtcatcggtagcggcagcatggcagtcggcgggccgacgtcctcg
cagggaggcgtgctcggcacgacacctgttgtgggcagtgttggctcagggattctgggt
ttgggttcgggtcaatcagtgggacaggggtcttctatggggtcgcagagccccgttggg
agcttagctcctggaggcggactaggagttatcggcagcaacggaggcagcttaggatcc
ataggaagtggagtcggaggaggaagctcatctctgtccgttcaaccgccaagccggcag
aagcagagcaatagcacagcaggtcacagtgctttggtaccagatagcacaacagactcc
accctgaacagtgccagccaatcacaaagcagccagtcctcatctctgacctccacagcc
aatcagcttaaggacactggtcccagtttgcttagctccatgggtttgtcgtccacctcc
ccgtcgcctgctgcctacagcgaggctaaagcgagcggcggaagccttcagaatgggccg
ctgtcctattcgctgtcatctgaaagcatcaaggagcctctgagcagatccatggccgag
cgagcagcaccaagctcagggatcgagggagacgtgtcctccctgcaccttacttccgac
aacttcccaagcagcactacggccccgtcagggcctccgtcagcacctcagtcctccctg
tcagaggtcagcatcctgccatcgctgggcgtctgtccgctggggccggttcccctctcc
aaagaccagctctaccaacaggccatgcaggaagcgacgtggacgcacatgccccacccg
tccgactcggagagaatcaggcagtacctcatgaggaacccctgccccaccccacctttc
caccaccagatgcctccgccccattccgacactgtagagttttaccagaggctttccaca
gaaacgctgttcttcattttctactacctggagggcactaaggcccagtatctcgcagcc
aaggccctgaagaagcagtcatggaggttccatacaaagtacatgatgtggtttcagagg
cacgaagagcccaagaccatcactgatgagtatgagcagggaacatacatttattttgac
tatgagaagtggggccagcggaaaaaagagggctttacctttgagtaccggtacctagag
gaccgagacctccagtga
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