Cyprinodon variegatus (sheepshead minnow): 107089081
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Entry
107089081 CDS
T06110
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107089081 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107089081 (taf5)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107089081 (taf5)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107089081 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
107089081 (taf5)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107089081 (taf5)
STAGA complex
107089081 (taf5)
TFTC complex
107089081 (taf5)
SAGA complex
107089081 (taf5)
SLIK complex
107089081 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
NBCH_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_Nup120_160
PROPPIN
LisH
Beta-prop_WDR11_2nd
LisH_PAC1
Motif
Other DBs
NCBI-GeneID:
107089081
NCBI-ProteinID:
XP_015237116
Ensembl:
ENSCVAG00000018791
UniProt:
A0A3Q2G1V9
LinkDB
All DBs
Position
Unknown
AA seq
745 aa
AA seq
DB search
MAAVQGGMVDAKDETDIKKEPTSDGFGNNHANDARVLTASPGSSAAAGNNKPAAGAPEEQ
QTLLAVLQFLRKNKLSESAEILRREAGLPEEVLDPKGSDSTGSGQGGSTEVDGEDASSLL
SRVTLPTPGGAKAPSKAGEDQPDVNVVLSAYSQQGDPALYEVYYSGLKKFIESVLDCHRA
ELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEEDLRILSSLTKKEHMRGN
ETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMLRSKSQIDA
MSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEADNEEGKPKKKKPKKDSTGSKS
KKQDPNAPSQTRIPLPELKDSDKLDKIMYLKESTKRVRLGPDNLPSICFYTFLNAYQGLT
AVDMTDDSSLIAGGFADSTVRVWSVTPKKLRKVKTAADLNLIDKESDDVLERIMDDKTAS
ESKCLHGHSGPVYGISFSPDRNYVLSSSEDGTVRLWSLLTFTCLVGYKGHNYPVWDTQFS
PYGYYFVSGGHDRVARLWATDHHQPLRIFAGHLADVTCTRFHPNANYVATGSSDRTIRLW
DVLTGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMVGELKGHTDTI
YSLRFSRDGEILASGSMDNTVRLWDAMKAFDDLETDDFTAATGHIHLQDNSQELLLGTYM
TKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacagggtggtatggtcgacgcgaaagacgaaacggacattaaaaaagaa
ccgacgagtgatggcttcggaaataatcacgcgaacgacgcaagagtgctcacggcgtcc
cccggttcgagcgctgcggccggaaacaacaaaccagcggcgggagcccccgaggaacag
cagacccttctggctgtgctgcagttcctcagaaagaacaaactgtcagagtccgcggaa
attctgcgtcgcgaggcgggattgccggaggaggttctggatccgaagggatctgattcc
accggttctggacaagggggcagtacggaggtagacggcgaagatgcgagctctctgctg
agccgggtgaccctccctacccccggcggagctaaggcgccgagcaaagctggcgaggat
cagccagacgtcaacgtggtgctgtcagcctacagccagcagggagatccggctctctac
gaagtttactatagcggcctgaagaagttcatcgagtctgttctggactgtcacagagct
gaactgtctcaggtcttctaccctctgtttgtgcacatgtacctggaactggtttacaac
aatcatgaaagcgaggccaaagctttctttgaaaagtttagtggagaccaggagtgctac
tatgaagaagacctacgcattttgtcaagcctgaccaagaaggagcatatgagagggaat
gaaaccctgctggatttccgcaccagcaagtttgttttacgcatctcccgggactcctac
cagctgctgaagagacacctgcaggagcggcagaacaaccaaatatggaacataatccaa
gaacatctctacatcgacatctttgatggcatgctgcggagcaagagccagatcgatgcc
atgtcaggcagcttggctggagaggccaaacgagaagcaaacaaggctaaggtttactac
ggtcttctgaaagagccagaaattgagcttccccttgatgatgaggatgaggaagcagac
aatgaggagggtaaacccaaaaagaaaaagcccaaaaaggatagtaccggctccaaaagc
aagaagcaggatccaaacgctccctcacagacgaggatacctttaccagagctaaaagac
tcagacaagctggacaagatcatgtacctgaaggagtccactaagagagttcgattggga
ccagataacctgccctccatctgcttctacactttcctaaacgcataccagggtctaact
gcagtcgacatgacggatgactccagcctgattgcaggaggctttgctgactctacggta
cgtgtgtggagtgtcacgccgaaaaagctccgcaaggtcaagactgcagcagacttgaat
cttattgacaaagagtcagacgatgtgcttgagcggattatggacgataagacagccagt
gagtcaaagtgccttcatggacacagcggaccagtgtatggcatcagcttcagcccagac
agaaactacgtgttgtcgagctctgaagatggcacagtcaggctgtggagccttctaaca
ttcacctgtctggtgggatacaaaggccacaactacccagtatgggacacccagttctcc
ccttatgggtattattttgtctcagggggacacgaccgggttgcccgcttatgggcaaca
gatcaccaccagcctctgcggatatttgctggccacctggccgacgtcacttgcactcgc
ttccaccccaacgccaattatgtggccacaggttcttctgaccgcaccatccgtctgtgg
gacgtcctcactggaaactgcgtccgtattttcaccggccataagggtccaatccacgcc
ttggctttctctccaaacggaaagtttttggcctcaggagccactgatggtagagtcctt
ttgtgggacattggtcatggactgatggttggagagctcaaaggccacacagataccatc
tattccctccgattcagtagggatggagaaatcctcgcctccggttctatggacaacact
gttcgcctgtgggatgccatgaaagcatttgatgatttagagactgacgacttcactgca
gctacgggacacatccatctccaggataactcccaggagcttttgttaggcacctacatg
actaaatcgactcctgtaatacaccttcacttcacacggagaaacctgcttctggctgca
ggagcatataatccataa
DBGET
integrated database retrieval system
