Cyprinodon variegatus (sheepshead minnow): 107089092
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Entry
107089092 CDS
T06110
Symbol
tmc5
Name
(RefSeq) transmembrane channel-like protein 5
KO
K21988
transmembrane channel-like protein
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
107089092 (tmc5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cvg02000
]
107089092 (tmc5)
03037 Cilium and associated proteins [BR:
cvg03037
]
107089092 (tmc5)
Transporters [BR:
cvg02000
]
Other transporters
Pores ion channels [TC:
1
]
107089092 (tmc5)
Cilium and associated proteins [BR:
cvg03037
]
Other cilia and associated proteins
Stereociliary proteins
107089092 (tmc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
107089092
NCBI-ProteinID:
XP_015237138
LinkDB
All DBs
Position
Unknown
AA seq
961 aa
AA seq
DB search
MNYGHGGVFNPAYHDSETLEIDRRFSRKPPHANPYAGDDPNGAEWRAPREGWGGRENIPM
GPMSTHTGSPSWQHDLSHSTFQIDQDRMYDRLPPVRPYSSAAGNMTMRWRGLTMRRMSVF
PNSDPAHAAFTEDAIMSEMENEEQDLVKELVALSITEQIKKIRELPRSFEEKKHIRRQVR
ALKSSERSRQFTCLSNCSKNMSLSMRRFGYSVKSAKQTLELWHSTMKEIGGKFGSSVLNY
FVLLKWLLMFNIFSFLINFGFITIPLLIYDHSPNTPANMTFRGLELLTGAGYFNYTIMYY
GSYSNETVDGLVNYDMKLAYFFTISVYMVFCGIVLIFSMASSFKKNYAMADPSSNSAWQL
LHSWDFSITNENAVNQRKNNIRIQLKESLAEKAHIEQKTLPEKLQQYGIYLGSWLLSTGL
AVACGVSIFYLCKYEDKQTVDTERWSLQQEAETLLVPFVVSLMNMVVPLLFSLFNKFEHY
SSQSKQIYALLFRNVLLRISILGVLCYHWMNVVPLKFTCWEPMVGQALYRLVIVDFIFLM
LGSFFGEFLSNVIGTKIQPRLGVPEFDVARNILEIIYAQTLAWIGIYFSPLLPVIQILKF
FILFFIKKVSLTQNCQPPRRSGRAAQMKTIIIFLLFFPFFMGALSIVAYTSWSLTPSEGC
GPFRGLNRTFGVIEGWIDDVDKNFPGSKWAVWIYDNVIKSELFFFLITLIILVIIYIFWQ
LAEGRKELIILLREQIVNEGQDKSFLLDRLQNLQRSGPKVNNQPKKQKTRNKPGSAFSGS
PSNSNAVVQVLLARQQVEEQERRSVRGSSVPLDISTTDAMTQAILARQKAEREDENVYNI
ADENPPSLNAVAQSLGARQRAEENDQYWSTTNFNQSNPVNRLSMRAGQRAEGGRGEDSYD
GPSSASNVMAQVMQARQRVEEEERNQWTRAPGQNPAPSGSSALIQAMLARQQVQDEYDDG
Y
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgaattacggtcacggcggggtttttaacccagcctatcacgacagtgagacgctggaa
attgacagaagattttccagaaaaccaccgcatgccaatccttatgcaggagatgaccca
aatggtgctgaatggagagcacccagagaaggatggggtgggagagaaaacatccctatg
gggcccatgtccacacacacaggaagtccttcatggcagcatgacctcagtcacagcaca
tttcagattgatcaagaccgtatgtacgatcgattaccacctgttcgcccttattcctca
gctgcaggcaatatgacaatgagatggagaggattaacgatgagacgaatgagtgtgttt
cctaatagtgatccggctcatgcagctttcacagaagatgccatcatgagcgagatggaa
aatgaggaacaagaccttgtaaaggagcttgttgctttgtcaataacggaacaaatcaag
aagatccgtgagctaccaaggagctttgaagagaagaaacatattaggagacaggtaaga
gcactgaagtcttcagaacggtctcgccagttcacctgtttgtcaaattgctctaaaaat
atgtcactgtcgatgcgaagatttggttacagtgtaaaatcagcaaagcagaccctggag
ctttggcacagcaccatgaaggagattgggggcaaatttggctccagtgtcctcaactat
tttgtgctcctgaagtggctcctcatgttcaacattttctccttcctgatcaactttggc
ttcattaccatcccactccttatctatgaccattcaccaaacacacctgcaaacatgacc
ttcagaggactggagttactgactggagctgggtatttcaactatactatcatgtactac
ggcagctacagcaatgaaacagttgatggcctggtgaattacgacatgaagctggcctat
ttcttcaccatctcagtctatatggtgttttgtggaatcgtgctcattttcagcatggca
agctcatttaagaaaaactatgccatggcagacccatcatcaaacagtgcatggcagctt
ttacacagctgggattttagcattaccaatgagaatgcagtaaaccagcgtaagaacaac
atacgaatccagctaaaggagtctttagcggaaaaggcacacatagagcaaaaaacgctt
cctgaaaaactacagcaatatgggatttatcttggctcctggcttctctcaacgggttta
gctgttgcctgtggagttagcatcttctacctctgcaaatatgaagataagcagacggta
gacactgaaaggtggtctctacaacaggaagctgagaccctcctggttccctttgtggtg
tctttgatgaatatggttgttccactcctattctccctcttcaacaagtttgaacactac
tccagccagagcaaacagatctatgccttgttattcagaaatgtcttactgaggatttcc
attttgggagttttgtgttaccactggatgaatgtggttcctctgaaatttacatgctgg
gagccaatggtcggacaagctttgtaccgtttggtcatcgttgatttcatttttctgatg
ttgggatccttctttggagagtttctcagcaatgttattgggaccaaaatacaaccgcga
ctgggtgtaccagagtttgacgtagccagaaatattttggagatcatatacgcccagact
ttagcctggattggaatctacttctctcctctgctacctgtcatccagattctgaaattc
ttcatcttgtttttcattaaaaaggtcagtttgacccagaactgccagcctccacggcga
tcaggcagagcagctcaaatgaaaaccattatcatctttctcctcttcttccctttcttc
atgggtgccctgtcaattgttgcgtacacttcctggagtctgactccctcggaggggtgc
ggcccttttcggggactcaacagaacgtttggtgtgattgaagggtggatagatgatgta
gacaaaaactttcctggctctaagtgggctgtatggatctatgacaatgtcatcaagagt
gaactgttcttctttcttatcacactcattatccttgtcatcatatacatcttctggcag
ctcgctgagggccgcaaggagctcatcattcttctcagagagcagattgttaacgagggg
caagacaagtccttcctgttagacaggcttcaaaacctgcagagatctggtcctaaagtg
aataaccaaccgaaaaaacagaaaactcggaacaaaccaggttcagctttctctggaagt
ccgtccaactcaaacgcagtggttcaggttctacttgctcgccagcaggtggaagaacag
gaaagacgcagtgtcagggggtcgtcagttccattagacatatctaccactgatgctatg
acacaagccattctggcacgtcagaaagccgaaagggaggatgaaaatgtttataacatc
gctgacgaaaaccctccttccctcaatgcagttgcacagagcttgggagccagacagagg
gccgaagagaacgaccaatactggagcacgactaactttaatcaaagtaacccagttaat
agactcagtatgcgagcagggcaaagagctgaagggggcaggggagaggattcatatgat
ggtccatcctcagcatcaaatgtaatggcacaagtcatgcaagccaggcagagagtagag
gaagaggaaaggaatcagtggacccgtgcccctgggcaaaaccccgctccttctggctcc
agcgctctcatccaggccatgttggcccggcagcaggtgcaggacgaatatgatgatggt
tactga
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