Cyprinodon variegatus (sheepshead minnow): 107089100
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Entry
107089100 CDS
T06110
Symbol
pdcd11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvg03009
]
107089100 (pdcd11)
Ribosome biogenesis [BR:
cvg03009
]
Eukaryotic type
90S particles
Other 90S particles
107089100 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
Spt6_S1
OB_RRP5
UTP6_C
TPR_16
ARM_TT21
TPR_CcmH_CycH
ARM_TT21_N
TPR_15
Motif
Other DBs
NCBI-GeneID:
107089100
NCBI-ProteinID:
XP_015237149
LinkDB
All DBs
Position
Unknown
AA seq
1796 aa
AA seq
DB search
MASLEEDFPRGGTTKKTTESKVPVERNKVDNLFKSDEQTATKKRKGGAKNDGLKKQKTDE
KQDGLTLNTAGKIVEILHIKNVRVGMLFLGCVKEVTDFEVTVSLPCGLLGFLSIRNVCDS
YTKLLSEQLDSDVDTEDFCSLSQIFWPGMLLRCVVSKLDITKGGSLSIQLSVNPKLVNKH
LTSSSLKPGMVLSGCVESVEDHGTLIDIGVSGTKAFLPEDATMNKQNKELKVGQYLTSRV
EEVKNDGRVVKLSSDPSTVARACADAKHGWNLTNLLPGLTVKATIKKVTKHGFHLDFLSS
FSGQVDFLHMEPKESSSYAEGLQVRACVLYIELTTRLVGLSLRSYLLQPGSDIDLAPPGS
HRIGEVVKDCKVSKMHHLSGALLELPDKTSAFVHRNHLKESKDPANDNKMSTMSDLTCRI
LDFSPMDQIYFASLRKSVIDQQFYKYQDIHTGQVVEGTVSVLLGHGMVVHLSEHVKGLVP
RTHLSDIILKNPEKKYMEGMRVKCRVMSIVMDNRNVTLIRFCKLLLVTXPXLVSVWVERP
QISHHVIXVSTFKLLSLFXIHILSTWSVGIFSYLVYLQVLKTKVLQCEPEKEKLLLSFKA
VAEGETEEPTKAQLDCEVGKRLEAKVVKKTVNGLEIVVLPDEFRAVLPTVHLSDHTSNCV
LLWESLKEGDTISNLVCFNKNKQNITVTKKPIVRWSLEEGAVAKDFSEVTVGMQLIGWIK
SIMSYGVFVEFPYGLVGLAPKSALSDKFITDTTTAFKLGQTVIAKVTNLDEEKRRFLVTL
KVSEVITPDWDAQSRLLNGLKERRAVKEMLAVRDNNELWQQLAALFVGQRLKLTVDSSSE
NGAQFKSDDLPGATILASKHHVTGVSLSPGQKVSAVILSVDILSACVHVSVLHKLLGKKK
SLNEGSECSAVVQFVDQDFAVVSLKDAAELTLIQTCNHLNEVILSESERLKVGMTLTVQV
VEPSCEELEGLPLVLWKGRAPRRQRTTSENQADSAGHRFGKVLQGKVTSVKPTCIQVALE
DGSTGSVHVSQVVEPTEIRQGSFPTSTVKVGSVVKARVIGGREATNNRFLPFSHPKFKYT
VPELTLIPSQLDDVEFKPVTAKDKLASYKVGDEITAFVSKFRSDKKCLEITTDPCVTGTV
DLLSMITDPKDASHPEKLYKLGQVVCAKVVDVSVRPHRFVLSLTGIHKLEKGSITLGMVT
SVLPQVGLLVKLPFGASGTVSVTDLSDSYRPKPLETFHKDQFIRCCLLDVEKGKWHLSLR
PSRLNPQKTKSPKDPEVLSVDQLQHGQIVRGYVKSVCEQGVFIRLSRSITGRAQLQQSSQ
YFVHNHSILSDHLPVNTLLTTKILSVDREDQLVDLSLLPADTGKPDVLPESLGLPLRLVG
DEKKRNSKKTKKRLLSESKQETEPQIPKKKKKKSKTDADDSGVEVYFREEEDDDDKEDVK
NDASKVAPSPAAPARLQLAAGFSWDEGLSSLRPASQPKDGDSSDGEEQDGNNKPQKKSRH
ELEQEKKSAEKALLQREAELMDPNLRPQDEASFERLLLASPNSSLLWLQYMAHHLQATQI
EQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLKKVFERAVQFCEPMPVYQ
QLADIYAQSNKIQEAEGLYKTMVKRFRQNKAVWLSYGTFLLQQGQNDAASALLQRALKSL
PPKESVDIITKFAQLEFRFGDAEKGRVMFDKVLTTYPKRTDLWSVFIDLMVKYASQKEVR
ALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSIQAVKDKAMEFVEAKGKDASN
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctagaggaggactttccccgcggaggcacaacaaagaagaccacagagagt
aaggtcccggtggagcgaaataaagtggacaacctgtttaagtcagatgaacaaactgct
acaaagaaaagaaaaggaggtgccaagaatgatggcctgaaaaagcaaaagacagatgag
aaacaagatggcctgacactaaacactgctggcaaaattgtggagattctgcacataaag
aacgtgagagtggggatgctgtttctaggctgtgtgaaggaggtgactgactttgaggtg
acggtcagcctcccttgcggcctgctgggcttcctcagcatcaggaatgtgtgcgactcc
tacaccaagctgctgagcgagcagctggattcagatgtggatactgaggatttctgctct
ttgtcccaaatcttctggccgggaatgttgctccgatgtgtggtttccaagttagacatc
actaaaggaggctcgctcagcattcagctctcggtcaatccaaagctggtcaacaaacac
ctcaccagcagctctctgaagcctggaatggtcctgagtggatgtgtggagagcgttgaa
gaccatggcaccctaatcgacatcggtgtcagtggaaccaaagcttttctgcctgaggat
gctacaatgaacaaacagaataaagagctgaaagtgggtcagtatttgacttctcgggta
gaggaagtaaagaacgacggtcgtgtcgtcaagctgtcctctgatccgtccacggtagct
cgggcctgtgctgacgcaaagcatggctggaatctcaccaacctcctgccgggcctcacg
gtcaaagccaccatcaagaaggtgaccaaacatggcttccacctggacttcctgtcctcc
tttagcggtcaggtggactttcttcacatggagccaaaggagtcgtcaagctatgcagag
gggcttcaggtgcgagcatgtgtactgtacattgagctgaccacccgccttgttggactg
agcctgcgcagctacctgctacagcccggctccgacattgacctcgcacctcctggctct
caccgaatcggtgaagtggtgaaagactgcaaggtttccaagatgcaccatctgtcaggg
gccttgttggagctgccggacaaaacctctgcctttgtccataggaaccacctgaaggaa
tccaaagacccagctaatgacaacaagatgtctaccatgtcggaccttacctgcaggatc
ctggacttcagccccatggatcagatttattttgctagtttacggaaaagtgtgattgat
caacagttctacaaataccaggatattcacactggccaagttgtagaggggactgtgtca
gtgctgctgggtcatgggatggtggtacatttgtcagaacatgtgaaaggcctggtgcct
cggacgcacctctcagacatcatcctgaaaaacccagaaaaaaagtacatggagggaatg
agggtgaaatgtcgggtcatgtctattgttatggacaacagaaatgttacattaatcagg
ttctgtaagcttttgttggtgacttaaccctgacttgtttctgtgtgggtggagcgacct
cagatttcgcatcatgtcatttgagtctctacttttaagctgctcagtctgttttgaatc
cacattctctcaacctggagtgttggaatattttcctatctggtttacctgcaggtgttg
aagaccaaagttcttcagtgtgagcccgagaaggagaagttgttgctgtcatttaaagcg
gtggcagaaggagagacggaggagcctaccaaagctcagttggactgtgaggtgggaaag
aggctggaagcaaaggtggtgaagaaaaccgtgaacggtctggagatcgtcgtcctccca
gatgagttccgcgctgtgctacccacagtgcacctctctgatcacacgtccaactgtgtg
ttactgtgggagagtctaaaggaaggagacaccatctcaaacctcgtctgctttaacaag
aacaagcagaatattacggttaccaagaaacccatagtgagatggtcgctggaggaagga
gccgtcgctaaagatttctctgaggtgactgttgggatgcagctgattggctggatcaag
agcatcatgtcgtacggtgtcttcgtagagttcccctatggtcttgttggtcttgcaccc
aagtctgccctgtcggataagttcatcaccgacacaacgaccgctttcaagctaggtcag
acggttattgccaaggtgaccaacctggatgaggagaagcggcggttcctggtgacgctg
aaggtatcagaagtcatcacacctgactgggacgcccagagccgactgctgaacggccta
aaggagagaagagctgtaaaggaaatgctggctgtcagagataacaacgaactttggcag
cagttggccgctttgttcgttgggcagaggctgaaactgacggtggactcttcgagtgaa
aacggagcccagtttaaatctgatgacctgccgggcgccaccatcctagccagcaaacac
catgtgacgggagttagcctgagccctggacagaaagtgagcgcagttatcctcagcgtc
gatatcctgtctgcttgtgtccatgtttccgtccttcacaagctgcttgggaaaaagaaa
tctctgaatgaaggctcagagtgctccgccgtggttcagtttgtagaccaggactttgct
gttgtctcgctgaaggacgcagcagagctgaccctgatccaaacctgcaaccacctcaac
gaggtcattctgtcagagtcagagagactcaaggtgggcatgacgttgacggtgcaagtt
gtggagcccagctgcgaggagctagaagggctccccctggtgctgtggaagggtagggca
ccaaggcggcagcgcacaacatcggaaaaccaggcggactctgcgggacaccgatttgga
aaagtcctgcagggcaaggtgacgtctgtgaagcccacgtgcattcaggtcgctctggag
gacggaagcacgggcagcgtccacgtctcacaggtggtggagcccactgagatcagacag
gggtccttccccacgtccaccgtgaaagtgggcagcgtggtcaaagccagggtcattgga
ggacgggaagccaccaataaccgatttcttccattttctcaccctaaattcaagtacaca
gttcctgagctcacacttatacccagccagttggatgatgtagaatttaaaccagttaca
gcaaaggacaaactggccagttataaggtcggcgatgaaatcacagcgtttgtatcaaag
ttcagatcagacaagaagtgtctggagatcaccaccgacccctgcgtcacagggaccgtc
gaccttctgtccatgatcacagatcctaaagatgccagccaccctgaaaagctgtacaag
ctgggccaggtggtctgtgctaaagtggtggacgtgagcgtgcggcctcatcgctttgtg
ctctcactcacagggatccataaactggagaaaggcagcatcacgttaggaatggtgacc
agcgtcctgccacaagtcggcctcctggtcaagcttcctttcggtgcttcgggtaccgtt
tctgtcactgacctcagtgattcctacagaccaaaaccactggagactttccacaaggat
cagttcatcaggtgttgtcttctagatgtggagaaaggaaagtggcacttgtctctccgt
ccatcaaggctgaacccgcagaagaccaagtcgcctaaggacccagaagttctgtctgtg
gaccagctgcagcacggccagattgtccgaggatatgtgaagtctgtgtgtgaacagggc
gtctttataaggctgtcacgcagcatcacagggagagcccagcttcagcagtcctctcaa
tactttgtccacaaccacagtatcctgtctgatcacctgccggtcaacaccctcctcacc
actaaaatcctcagtgtcgacagggaggatcagttggttgacctctcgcttctccctgcg
gacaccgggaagccagatgtgcttccagaatctctcggcctgccgctgcgtctcgttggg
gacgaaaagaaacgcaactcaaaaaagacaaagaagcggctgctctctgaaagcaaacag
gaaacggaaccccagatcccgaagaagaagaaaaagaaatcaaagaccgacgccgatgac
agtggagttgaggtttacttcagagaagaggaggatgatgatgataaagaggatgtaaag
aacgatgcttctaaagttgctcccagcccagcagcgccagccaggttgcagctggcagca
gggttctcttgggatgaggggctgagctccctaaggcctgcgtcacaaccaaaggacggg
gactccagtgacggagaagagcaggatggaaacaataagccccagaagaagtcacgccac
gagctggaacaggagaagaagtctgctgagaaagccctgttacaacgagaagcagagctg
atggacccaaacctgcggccccaggatgaggcctcctttgagcgacttcttttagcctcc
cccaacagctccctgctgtggctccagtacatggcccaccatctgcaggccacacagatc
gagcaggcccgagctgtggccgagagggccctgaaaaccatctccttcagggaggagcag
gagaagctgaacgtgtgggtggccttgctgaacctggagaacatgtacgggacagaggag
agtctgaagaaagtgtttgagcgagctgtgcagttctgtgagcccatgcctgtgtaccag
cagctggccgatatctacgcccagtccaacaaaatccaggaggcagaaggcctgtacaag
acgatggtgaaacgtttccggcagaataaagcggtgtggttaagctacgggactttcctg
ctccagcagggccagaacgacgctgccagtgctctcctgcagagggcgctgaaaagtctt
cctcccaaagaaagtgttgatatcatcaccaagttcgcacagctggagttccgcttcggt
gacgcagagaaaggtcgtgttatgtttgacaaagtcctgacgacttatccaaaacgtacg
gatctgtggtccgttttcatcgacctcatggtcaaatatgcatcacagaaggaagtgagg
gccctctttgatcgggtgatccacctcagcgtttcggtgaaaaagatcaagtttttcttc
aagcgctacctggagtatgagaagaagcacggcaccccacagagcatccaggcagtcaaa
gataaggctatggagttcgttgaagcaaaaggcaaagatgcttcaaattga
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integrated database retrieval system
