Cyprinodon variegatus (sheepshead minnow): 107089182
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Entry
107089182 CDS
T06110
Symbol
limch1
Name
(RefSeq) LIM and calponin homology domains-containing protein 1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cvg04990
]
107089182 (limch1)
Domain-containing proteins not elsewhere classified [BR:
cvg04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
107089182 (limch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
107089182
NCBI-ProteinID:
XP_015237308
Ensembl:
ENSCVAG00000013432
LinkDB
All DBs
Position
Unknown
AA seq
1171 aa
AA seq
DB search
MASPAADFGQSHQHPPVTQSAADSAFLEAQKWIEAATGRCFGEKDFRGGLENGILLCELL
SSIRPGLVKKINRLQTPIAGLDNLSVFLRGCEELGLKGSQLFDPGDLQDTSTRPAAKGSD
GSRRLKNVLITIYWLGRAANSCTSYNGPTLDLKEFEGLLSQMRKEAETVESPQRSIRDSG
YIDCWDSERSDSLSPPRHGREDSFDSLDSFGSRSQQTPSPDVLVPRGSSDDHGSDSESDG
TPNRKMPDLHKDDMLARRTSVTELRTAMPFNQYLPNRSNQSGYVPAPLRKKKNDKEDGGR
QTCSTATSPVGGDRPCSPKESPVLVLPLRESHSPSPTPHIEPQIQENKSEDDERDVKLSA
SSPCIVIHAVGIRRSSEPLRCGLYQANSEPPRETITQLKGTSEQRSVSMNDMRGEEEALR
QPHSHVRHERMHNQYNRMREDENHWQEDLARWKSRRRSVSQDLIKKEEERKMMERLMSGD
GYISQRRKSIKTYREIVEEKERREEELREAYRKARTPEEASAVLQRYAQRFSISEAVLER
LQLPKLLDRSVSADPSFPISPLSLSLSSSPTTPDPFDEDPSGPLRYLRQQSAPLPRFTST
LEAQIEEFPKDSTSLHRPQIRSRSSEPPSTRALSPKPVPLLSPKPYFQPQQLASEKQSSK
VDGLLTVNGDIGNNSESKARESPPLFLPSPSLSGNGTLDAPSSDASPARCLPATPERRSQ
GSTKDTDRPYNTGSATRDFKEEKITECLSSPIRPTTLPEELRQPEDSFGEAGGQTDAAQQ
EEKTYPAVHQQSTTAKPEKTELSSENLQQIFPTEVDTIKNKAIASMGSFQRMEMAPPSAA
PGSLGYIPPKEVASEFEISVRSLQTSSNPKSRWEFFAPPDASKKNQHGNEKYQREQEKLK
EEWEKAQREVVEEERKYHEEERKILEETVMPLTPRSSALPSPSRGGLSSTSEPQDTIVRS
LADWERKQELLERQSRGSTESAERKMRENDRTSDISTADDSMNTGRSMVSQSSSQAEKRA
QSVPKSQTLPPTSAKCSTPDKKQSAPATDSTRPSRSAGERRCSPTDNDKGRGSSKPIASC
PSEPDTLPPPPNRSVSGRKLCSSCGQPLGKGAAMIIETLSLYFHIHCFKCGVCKGQLGDT
TTGTDVRIRNGLLNCNQCYIRSRSAGQPTTL
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggccagtccggctgcagattttggacagtctcatcagcatccccctgtcacacagtcg
gccgccgactctgcgtttctggaggcgcagaaatggatagaggctgcgactggacggtgt
tttggtgaaaaggatttccgaggaggcttggagaacgggattctactgtgcgagttactg
agctccattagacctggcttggtaaagaaaattaaccgactgcaaacaccaatagctggc
ctggacaacctgagtgtttttctgcgaggctgtgaggagttaggactgaaaggctcccag
ctgtttgaccctggagacctgcaggacacatcgacacgtcctgctgcaaagggaagcgac
ggcagccgaagactcaagaatgttttaatcacaatctactggctcggtcgtgctgccaac
agctgcacctcctacaacgggcccacgctggacctaaaagagtttgagggcttgctgtca
caaatgcgaaaggaggcagagacagtagaaagtcctcaacgcagcattcgggacagcggc
tacattgactgctgggactcggaacgcagtgactccctctctccgccacgccacggacga
gaagattcatttgacagcctggactccttcggctcgcgctcgcagcagactccgtcaccg
gacgtcctggtcccacgcggcagcagtgatgaccatggcagtgactcagagtccgatggc
acacctaacaggaagatgccggaccttcacaaggacgacatgttggcgcgtcgcacatca
gtcacagagctgcggaccgccatgccttttaaccagtacctacccaacaggagcaaccag
agcggatatgttccagctccacttcgcaaaaaaaagaatgacaaggaagatggagggcgc
cagacctgcagtactgcaacctcacctgtaggaggagacagaccttgtagtccaaaagaa
agccctgtcttagtcctcccacttagagagtcccatagcccttctcccactccacacatt
gaaccacagattcaagagaacaagagcgaagacgatgagagggatgtaaagctgagtgct
tcctcaccttgcattgtgatccatgctgtgggaataagaaggagcagtgagcctctacga
tgtggcctctaccaggccaactcggagccccctagggaaaccatcactcagctaaagggc
acctctgaacaaaggagtgtgagtatgaatgacatgcgtggtgaagaggaggcgcttcgg
cagccacatagtcacgtccgtcatgagcggatgcacaaccagtacaacagaatgagagaa
gacgagaatcactggcaggaggacctggcccgatggaaaagtagaaggaggagtgtctct
caggacctgattaagaaagaggaggagaggaaaatgatggagcgactgatgtcaggagac
ggatatatctctcaaaggagaaaaagcatcaaaacttaccgagaaattgtggaagagaag
gagcgtcgtgaagaggagctacgagaggcttacaggaaagccagaactccagaggaggca
tctgctgttctccaacgttacgcccaacgtttctccatcagcgaggccgtactggagcgc
ctgcagttgccgaagcttctagaccgcagcgtatcagctgatccctcctttcccatctcg
cccctttccctctcgctctcctcctcccctacaaccccggaccccttcgacgaagacccc
agcgggcccctgaggtatctgcggcagcagtcagctccactgccaaggtttacatccacg
ctggaggcacaaattgaagagtttcccaaagattcaacctcactccatcggcctcagatt
cgctctcgctcatctgaaccgccatccacccgagccctgtcacccaaacccgtgcctttg
ctgtcacccaagccttactttcaacctcaacagttggcatctgaaaagcagagtagtaag
gtggatggtttgctaacagtgaatggcgatattggaaataattccgagtctaaagcaagg
gaatcccctcccctattcctgccatcgccatccctgtctggaaatggcactttggatgct
ccctcatcagatgcctcgcctgctcgatgtctgccagccacccctgaaagacgaagtcaa
gggtcaacaaaggacaccgaccgaccgtacaacacaggatcagccacacgagattttaaa
gaggagaaaatcactgagtgtttatcatctcccattcggcctactactcttccagaggag
ttaaggcagcctgaggacagctttggggaggcaggaggtcagacagatgctgctcaacag
gaagaaaagacctatcctgcagttcatcagcagtcaactacagctaaaccagagaagact
gaactttccagtgagaacctacagcagatctttccaactgaggttgatacaataaaaaat
aaggctatagcatcaatggggtcttttcagagaatggagatggcaccgccctcggctgca
cccggatcgcttggatatatacctccaaaagaagtagcatcagagtttgaaatcagtgtg
aggtccctgcagacctccagcaaccctaagtcacgctgggaattcttcgctccgccagac
gcttccaagaagaatcaacatggaaatgagaagtaccagcgtgagcaggagaaactgaag
gaggagtgggagaaagcacagagggaggtggtggaggaagaaaggaagtatcatgaggag
gagcgtaagatactggaagaaactgtaatgcctttgacaccccgctcctcagccctgccc
tcccccagccgagggggcctctcctccacctctgagccacaggacacgattgtccgttcg
ctggcagattgggaacgaaaacaagagctactagagaggcagtctagaggaagcactgag
agtgcagagaggaaaatgagagaaaacgacagaactagtgacatcagcactgctgacgac
agcatgaatactggcagaagcatggtgagccagagcagcagtcaggcagaaaaacgtgct
caaagtgttcccaaaagccaaacgcttcctcctacatcagccaaatgctcaacgccagat
aagaagcaatcagctcccgctaccgatagcaccagacccagtcggtcagcaggagagaga
aggtgcagccccactgataatgataaaggacgcggctcatcaaagcccatcgcatcatgt
ccatcagaaccagacacattacccccaccgcccaacaggtctgtcagtgggaggaagcta
tgctccagctgcggacagcctctaggaaagggagcagccatgatcatagagacactaagc
ctctactttcacatccactgcttcaagtgcggggtgtgtaaaggacagttaggcgacaca
accacagggacagatgtccggataagaaatggcctcctcaactgcaaccaatgctacatc
cgttcccgatccgctggacagccgaccacattgtga
DBGET
integrated database retrieval system
