KEGG   Cyprinodon variegatus (sheepshead minnow): 107089337
Entry
107089337         CDS       T06110                                 
Symbol
wdr82
Name
(RefSeq) WD repeat-containing protein 82 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107089337 (wdr82)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvg03019]
    107089337 (wdr82)
   03036 Chromosome and associated proteins [BR:cvg03036]
    107089337 (wdr82)
Messenger RNA biogenesis [BR:cvg03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     107089337 (wdr82)
Chromosome and associated proteins [BR:cvg03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     107089337 (wdr82)
    COMPASS/SET1 complex (yeast)
     107089337 (wdr82)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR19_1st WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SPT8 NBCH_WD40 WD40_RFWD3 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_HPS5 Beta-prop_DCAF4 MinC_C VPS8_N
Other DBs
NCBI-GeneID: 107089337
NCBI-ProteinID: XP_015237555
Ensembl: ENSCVAG00000006451
UniProt: A0A3Q2CIX5
LinkDB
Position
Unknown
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENTDKINCFDFCSNGEAIISSSDDDSLVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVTSLSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSFD
KGPFATFKLQYDRTCEWTGLKFSNDGKLILLSTNGGALRILDAFKGAVLHSFGGYNNSKG
VTLEASFTPDSQFVMIGSEDGKIHVWNAESGMKVALLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctaacggacaatgtgcttcggagcttcagggttgctaaggtgttccgagagaac
acggacaaaattaactgctttgatttctgctcaaacggagaagcgattatttccagcagc
gatgacgactcactggtcttgtatgactgccaggagggaaaacccaaaagaactctctac
agtaaaaagtatggggtggatctgatcaggtacacacatgctgcaaacacagtggtctac
agttccaataaaattgatgacactatacggtatttgtctcttcatgacaacaagtatatc
cgatactttcctggacataacaaaagagtgacttctttgtcgatgtctcctgtggatgac
acgtttatttccggctcattagacaaaactatcaggctgtgggatctgcgttcgccaaac
tgccaggggttgatgcaccttcaggggaagccagtgtgctcgtttgacccagagggccta
atttttgcagctggaataaattcagagatggttaaactttatgatctgagatcatttgat
aagggtccctttgcaacttttaagcttcagtacgatcggacatgtgagtggacgggactc
aagtttagcaacgatggtaaactcatccttctttcaactaacggcggcgcccttcgcatc
ctggatgcttttaaaggagctgtgctgcattcttttggggggtataacaacagtaaaggt
gtaaccctagaggcttcctttactccagactctcagtttgtaatgatcggctcagaggat
ggaaagatccacgtgtggaacgcagagagtgggatgaaggtggccttattagacgggaag
cacaccggcccaattacctgtctgcagttcaatccaaagttcatgacgtttgccagtgcc
tgctccaacatggctttctggctgccgaccatcgatgactaa

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