Cyprinodon variegatus (sheepshead minnow): 107089391
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Entry
107089391 CDS
T06110
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107089391 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107089391 (lig3)
Enzymes [BR:
cvg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107089391 (lig3)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
107089391 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_M
DNA_ligase_A_C
BRCT_2
Motif
Other DBs
NCBI-GeneID:
107089391
NCBI-ProteinID:
XP_015237633
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MWRNLNLLIHKTVYLGQQPFSTLVKCRQPKTFWKAFFISSYTKQLPSPVHLKTLKTKQHS
TSAFRKHYFLQRHTPWTFFQQCYTEQPDMSEQRFLVEYAKRGTAGCKKCKDKIQKGIVRI
GKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDLTELEGWEELQDEDKDLINK
HVSDLMAKVNASPKKKVQAKLNTSGQLKTPPADPSVNAPRKFSGFTAAKAGSSGSSSSPG
PSPSPAKTEGGSPLSAQLCDPQHKDCLFREFRKLCATVAENNSYNTKTQIIEKFLRKGAG
GDKFHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQDDMVRDLDQGDVSETVR
MFFEESKSFPPAAKSLLTIQEVDASLTRLAQLTKEDDQQSELESIAKKCTSNDLKCIIRL
IKHDLKMNAGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQEASNGSGPRKLLTVEA
SLMTPVQPMLVSPALNISLCCCAFQVAHFKEYIPQAFPGGHSMILDAEVLLIDTKTSKPL
PFGTLGVHKKAAFQDANVCLFVFDCIYFNGVSLMESRCLKICFQNSFSFMMSSTLKCREF
RSSSLTMSSSASQGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSS
FLMGCYDPDSRKWCTVTKCSGGYDDAMLARLQKELDVIKISKEPSKIPGWLKIVKNYYPD
FIIRDPEQAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLRELFR
ISKENCDFKVTAGPSASNDDKGSSGGDSGGNSPSPSSNAGGPSKKTSECQSGSKSEPNVQ
SNGQSKATAQLLQPRNDKTLLDIFTGVKLFLPVSVQEFDKLRRYFVAYDGDLVPDYDASL
ATHTLGDPEEDSGAQKVSPSWIWECIRKRRVVPPC
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgtggagaaatcttaatttgttgattcataagactgtctatttgggccaacaacctttt
tctactctagttaagtgtcggcaacccaaaacattttggaaagcgttctttatttcttcc
tacactaaacagctgccctcacctgttcacctaaaaaccttaaagacaaagcagcattcc
acctcagcatttaggaaacactattttctgcagagacacactccctggactttcttccag
cagtgctacaccgagcagccggatatgtctgaacaaaggttcctagttgaatacgccaaa
cgcggcaccgcggggtgcaagaaatgcaaggacaaaattcagaagggcatcgtgcgcata
gggaaaatcgtgccaaaccctttcagtgagtctgcaggggagatgaaagagtggtatcac
gtgaagtgcatatttgagaagctggagagggcgagagccacgacgaagaagatagaagac
ctgacggagctagagggctgggaggagctgcaggacgaggacaaagacctcattaataaa
cacgtttcagacctgatggccaaagtcaatgcaagtccgaagaagaaggtccaggccaag
ctgaacacctccggtcagctcaagactccccctgctgacccctccgtcaatgctccaagg
aagttttccggcttcactgccgcgaaggctggtagctcaggcagctccagcagccccgga
ccatcaccctctcctgccaaaactgagggaggcagccccctgtccgctcagctctgtgac
ccccagcacaaggactgcctcttcagggagttccgcaagctctgtgcgacggtggccgag
aacaacagctacaacaccaagacacagattatagagaagttcctgaggaagggcgcagga
ggagataagttccacggggatctttacctgaccgtcaaactgctcctgcctggtgtcgtt
aaaagtgtttacaaccttaacgataagcagatagtaaaactcttcagtcgcatattcaga
tccaaccaggacgacatggtgcgagatctggatcagggcgacgtgtctgagaccgtacgg
atgtttttcgaagaaagtaaatcctttcctcccgctgccaagagcctcctgacgatccaa
gaggtagacgcatccttgacccgcctcgctcagctcaccaaagaggatgatcagcagagc
gagctggagagcatcgccaaaaaatgcaccagcaacgacctgaaatgcatcatcaggcta
attaagcacgacttgaagatgaacgcgggcgccaaacatgtcttggatgccgtcgacccg
aacgcttacgacgctttcaaggcctcccgcaacctgggtgatgtgatcgagagggttctg
aggaaccagcaggaggcctccaatggttctgggcccaggaagctgctgaccgtggaggcg
tcgctcatgacccccgtccagcccatgttggtgagccctgctctgaatatctctctgtgt
tgttgtgcattccaggtggcccacttcaaggagtacatcccccaggctttccccggcggc
cacagcatgattctagatgcagaggttctcctgatcgacacaaagaccagcaaaccgctt
ccattcgggactctaggtgttcacaagaaagctgcttttcaagatgccaatgtctgcctt
tttgttttcgactgcatctacttcaacggtgtgagtctgatggaaagccgatgtcttaag
atctgcttccaaaacagtttttccttcatgatgtcatcaaccctaaagtgcagagagttc
aggtcatcgtctttaaccatgtcttcctctgcgtctcagggaacctatgagccggggaag
cgacactggctgaaggtgaagaaggactacttgaacgagggggcgatggccgacacggct
gacctggtggtgctcggtgccttctatgggaaaggctccaacgggggcatcatgtccagc
ttcctgatgggctgttatgaccctgactcgaggaaatggtgcacagtcaccaagtgctcc
ggaggctatgatgacgccatgttggcccggctccagaaagagctggatgtgatcaaaatc
agcaaggaacccagcaaaatccccggctggttgaaaatcgtcaagaactattatccagat
ttcattatccgcgaccctgagcaagcgccggtctgggagatcaccggcgccgagttctcc
aaatccgagatgcacacggccgacggcatctccatccgctttccccgcatgacgcgaatc
cgcgatgacaaggactggaagacggccaccaacttgcaccagctcagggagctgttccgc
atatccaaggaaaactgcgactttaaagtgacggccggtccttccgcgtccaacgacgac
aaaggctcatcaggaggagacagcggagggaactcgccgtccccctcgtccaacgcaggc
ggtccgtccaagaagacgagtgagtgccagagcggttctaagagtgaaccaaatgttcag
agcaacggacaaagcaaagcaaccgctcagctgctgcagcccagaaacgacaagactctg
ctggacatcttcaccggggtgaagctcttccttccggtctccgtccaggagttcgataaa
ctgaggaggtacttcgtggcgtacgacggagacctggtgcccgattacgacgcctccttg
gccacgcacacgctcggcgatccggaggaggacagcggggctcagaaagtgtctcccagc
tggatctgggaatgcatccggaagaggcgcgtcgttccgccctgctga
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