Cyprinodon variegatus (sheepshead minnow): 107089476
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Entry
107089476 CDS
T06110
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107089476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107089476
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107089476
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107089476
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
107089476
NCBI-ProteinID:
XP_015237773
LinkDB
All DBs
Position
Unknown
AA seq
519 aa
AA seq
DB search
MFGSRKPFPDFGDGVDNDLADEMYYSQQSMFHRSDKDMLSSPSPSSSSQLSQLGVSLYGP
QSAIGFPVRNMGNSTPQLNRSLTQGSQLASHITPTTGVPSMSLHTPPSPSRGTLSLNTRN
ILNHSQGIGLTGRTSSMGSSGLGSPNRSSPSIICMPKQQPARQPCTINSMSGFGMNRSQG
YGMNNSLSSNIFNGTDGSDNIMGLDLSDFPALADRSRREAAGNPTPALNQLAGRPNYEVG
MVTKPSTEQTQDFSIHNEDFPALPGPNYKDPTLNNDDSKTNLNSTSKSTSSTDGPKFPGD
KTTSAQNNNQKKGIQVLPDGRVTNIPSGMVTDQFGMVGLLTFIRAAETDPGMVHLALGSD
LTTLGLNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGE
DLLFYLYYMNGGDLLQILAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGTYYF
FDCLNWRKVAKEFHLEYDKLEERPHVPSTFNYNPAQQAF
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgtttggctctagaaaaccctttccagatttcggggacggagtcgacaacgacttggct
gatgagatgtactacagccagcagtcgatgttccatagatcggacaaagatatgttgtcc
tctccttcaccgtcgtcgtccagtcagttgtcgcagctcggtgttagtttgtatggtcca
caaagtgcaatcggcttccctgtaaggaacatgggaaacagtacgcctcagttaaaccga
agtctaacacaagggtcgcagctagcaagtcatatcacccctacaacaggtgttccctcc
atgtcgctacacacacctccatcacctagcaggggaacgttatcgttgaatacgaggaac
atcctgaaccactcacagggcatagggttaaccggcaggaccagcagcatgggcagctca
ggactaggaagccctaaccgcagctccccaagcatcatctgtatgcccaaacagcagcca
gcacggcagccctgcaccatcaacagcatgtcagggttcggcatgaaccgcagtcaaggt
tatgggatgaacaattcattatcgagcaacatcttcaatggcacagatgggagtgacaac
attatgggactggatctctcagacttccctgcattagcagacaggagtcgaagagaagct
gctggaaatccaacaccagcgctcaaccagctggctggacgtcctaattatgaagttggc
atggtgacaaagccttcgaccgaacagacacaggacttctccatacataacgaggacttc
cctgcactgcctgggccaaactataaagaccccacattgaacaatgatgacagtaaaact
aacttgaactcaacaagcaagagcacatctagcacagatgggccgaagttccctggagac
aagacaacctcagcacagaacaacaaccagaagaaagggatccaggtgttgcccgatggt
cgggtgacgaacattccctcaggaatggtaacggaccaattcggcatggtgggcctcctg
acatttatccgggctgctgagactgatccagggatggtgcatctggcactaggaagtgac
ctcacaacactgggactcaacttaaattcaccagaaaacctatatccaaagtttgcctct
ccctgggcgtcggcaccatgtcgacctcaagacattgattttcatgttccatctgagtat
ttgaccaacatccatataagggacaagttagctgccattaagttggctcgatatggtgaa
gatctgttgttctacctgtactacatgaatggaggggacttacttcagatcctggcagca
gtggagctctttaatcgggactggagataccacaaagaggagcgggtttggataacgagg
gcgcccggcatggagcccacactcaagaccaacacctatgagaggggcacctactacttc
tttgactgtcttaactggaggaaagtagccaaggagtttcatctggaatatgacaagctg
gaagaaaggcctcacgtgccatcaacattcaactacaatccagcccagcaggccttctaa
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