Cyprinodon variegatus (sheepshead minnow): 107089494
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Entry
107089494 CDS
T06110
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvg04121
]
107089494 (pdzrn4)
Enzymes [BR:
cvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107089494 (pdzrn4)
Ubiquitin system [BR:
cvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
107089494 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
107089494
NCBI-ProteinID:
XP_015237810
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
EVELCRLSSQEKLGLTLCYRTDEEEDVAIYVSEVSPNSIAARDGRIREGDRILQINGQDV
QDREEAMAALSSDDFRNIILLVARPEMQLEEAWLDDEHSEFLEQLKMEMLEEQQREEMEL
AALQEEQEKQQRSEDDKPSCSTFSCSKDSVQNPKERKESSDHNVLAQIQRHLSRCLRDSQ
DSQSTSGSKRFEDNDYEDNDETEGDRFQQLLELKCQIRNSGEYDLFYSRRSTIECSMAEQ
SDVQHELRMLNEELRSIELECQNIMQAHKLRKSQQSPLMGRSAASIKSNQSPNHGESVKG
KLADINERMEKSDKDSSSAYNTAESSRSTPLAMDRSPEHSLQRMVSLTNQRNLYGGLATG
YSPSPSPILTCRTPVPGKSSSPDHSNPSESDQTTHAEDSKKKLKQCTSRIPYFSPSHSSQ
QRQANIPAHARHYQSYMQLIQQRSAVEYAQSQLSLLSVCKEPQRPITEPKMEWKVKIRSD
GTRYITKRPVRDKILRERALKIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLVRAKE
QKRRREFMQRSRLESLKENPQSSSEGRKEVSIIELSHKKMLKKRNKKILDNWMTIQELMT
HGTKAPEGAKVHNAFLSVTTV
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gaggttgaactttgtcgtctcagcagtcaagaaaaacttggccttaccctgtgctacagg
acagatgaagaagaagacgtggccatatatgtcagtgaggtcagtcccaacagcatagct
gccagagacggacggatcagagaaggagatcgtatcttacagattaacggtcaggatgtg
caagacagagaagaggcaatggctgctctctccagtgatgacttcaggaacatcatccta
ctagttgcccgacctgagatgcagctggaagaggcatggctggatgatgagcatagcgag
ttcctggagcagctgaagatggaaatgttggaagagcagcagagagaggagatggaatta
gctgccttgcaagaagaacaggagaagcagcagaggtcagaggatgacaagccttcgtgt
tcaaccttttcttgttcgaaagacagtgtacaaaatccaaaagagagaaaagaaagctca
gaccataacgtcttagcccaaatccagagacatctgtcccgctgcctacgagacagtcag
gactcgcagtctaccagtggtagcaaacgctttgaagataacgattatgaggacaacgat
gagacagagggagatcgtttccagcaacttttggagcttaagtgtcagatacgcaacagt
ggcgagtacgacctgttctacagccgtcgcagcactatagagtgcagcatggcagagcag
agcgacgtccagcatgagctgcgtatgcttaacgaggagttgcgcagtattgaacttgag
tgccaaaacatcatgcaggcccataagctgcgtaagagtcagcagtctcctttaatggga
cgttctgcagcttccatcaaatcaaatcaaagccccaaccatggagagtctgttaagggt
aagcttgcagacatcaatgagaggatggaaaagtctgacaaggacagctccagtgcctac
aacactgcagaaagttctcggagcactcctttggcaatggaccgctccccagagcactct
ctccagagaatggttagcctcaccaaccagaggaacctctatggtgggcttgctactgga
tactcccctagcccaagccccattctaacctgtagaacccctgttccaggcaaaagcagc
agccctgaccacagcaacccttccgagtctgatcagacaactcatgctgaggacagtaaa
aaaaagttaaaacaatgcacttctcggattccttacttctctccttcgcacagttcccag
cagagacaggccaacattcctgcccatgctcgtcactaccagagctacatgcagctgatc
cagcagcgttcagctgttgagtatgctcagagtcagctcagcctgcttagtgtctgcaaa
gagcctcagagacccattactgagcccaagatggagtggaaggtcaagatccgcagcgat
ggcactcgctacattaccaagaggcctgtgagagacaagatcctgagggaacgggcctta
aagattaaagaagagcgcagtggaggaatgaccacagatgatgatgcaatgagtgagatg
aagatggggagatactggagcaaagaggaaaggaagcaacatctggtcagggcaaaagaa
cagaagaggagacgggaattcatgcagcgcagtcgtctggaaagcttgaaggagaaccct
caaagcagcagcgagggccgtaaagaggtcagtattatagagctcagccacaagaagatg
ctgaaaaaacgcaataagaagatcttggacaactggatgactatccaggagctgatgact
catggcaccaaggctcctgagggagcaaaggttcacaatgctttcctctcagtcactact
gtatag
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