Cyprinodon variegatus (sheepshead minnow): 107089681
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Entry
107089681 CDS
T06110
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 2 isoform X1
KO
K04646
clathrin heavy chain
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04142
Lysosome
cvg04144
Endocytosis
cvg05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107089681 (cltcl1)
04142 Lysosome
107089681 (cltcl1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
107089681 (cltcl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107089681 (cltcl1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107089681 (cltcl1)
Membrane trafficking [BR:
cvg04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
107089681 (cltcl1)
Exosome [BR:
cvg04147
]
Exosomal proteins
Proteins found in most exosomes
107089681 (cltcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
capSnatchArena
Gp18_dom_I
RMC1_N
LVIVD
RtcR
Motif
Other DBs
NCBI-GeneID:
107089681
NCBI-ProteinID:
XP_015238076
Ensembl:
ENSCVAG00000018908
LinkDB
All DBs
Position
Unknown
AA seq
1691 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKYICIREKVGDQNQVVIVDMSDPNN
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTTTEEVLFWKWISVNTV
ALVTDTAVYHWSMEGDSQPTKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAAFGEFKVEGNAKPSTLFCFAVRSQAGGKLHIIEVGQPAAG
NQPFAKKAVDVFFPPEAQTDFPVAMQIGNKHGVIYLITKYGYIHLYDLESGVCIYMNRIS
AETIFVTAPHEATSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRMAVRSNLVG
AEELFARKFNTLFAQGSYSEAAKVAASAPKGILRTAETIRKFQSVPAQPGQASPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKASDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVNPDQGLQFAQMLVQD
EEPLANINQIVDVFMEGSLIQQCTSFLLDALKNNRPAEGHLQTRLLEMNLIHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VDDSLECLRAMLSANIRQNLQLCVQVASKYHEQLGTQALVELFESFKSYEGLFYFLGSIV
NFSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDAERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLIMVVRGQ
FSTDELVDEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNTPERFLKENPF
YDSAVVGRYCEKRDPHLACVAYERGQCDLELIKVCNENSLFKSEARYLVRRKDPELWAKV
LEENNPYRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLHRDLVKEAIDSYIKAVDPSAYME
VVNAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFVSGPNNAHIQ
QVGDRCYDEGMYEAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFA
CVDGEEFRLAQICGLHIVIHADELEDLISYYQDRGYFEELIALLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVITMM
NHATDAWKEGLFKDIIAKVANVELYYKALFFYLEYKPLLINDLLTILSPRLDHNRAVSFF
SKMNQLKLVKPYLRSVQNHNNKAVNEALNNLLTEEEDYQSLRASIDAYDNFDTIGLAQRL
EKHELIEFRRIAAYLYKRNNRWRQSVELCKKDKLYKDAMLFAAESKDAELAETLLQWFLE
EDRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDEFAAKVTV
DKLEEAESHRKTEDDVKEPQQMVFGQQLMLPAAASPVAPQPAYPAYGYPAPNNATPAAAG
YPAQPPYGYNM
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatattaccgatacgattccaggagcacctccagttgcagaacctgggtgtg
aacccagccaacattggcttcagctatctgaccatggagtcagacaagtacatctgcatc
agagagaaggttggtgatcagaaccaggtggtgatagtggacatgtctgaccccaacaac
ccgataagaaggcccatctctgcagacagcgccatcatgaacccagcaagcaaggttatt
gcattaaaagacgctgccaaaacactgcagatcttcaacatagagatgaagagtaagatg
aaggctcacaccacgacagaggaggttctgttctggaagtggatatctgtgaacaccgta
gctttggtgacggacacggcggtctaccactggagcatggagggggattcccagccgacc
aaagtgtttgatcgtcatgccagcctggctggatgtcagattatcaactacagaactgat
gagcaacagaaatggttactgctgattgggatttctgcacagcaaaaccgtgtggttggg
gcaatgcagctgtattcggttgacaggaaagtgtctcagcccatcgaaggccatgctgct
gccttcggggagttcaaagtggagggaaatgccaaaccttccacattgttctgctttgct
gtgcgttcacaggcaggaggaaagttgcatatcattgaagttggtcagccagctgcagga
aatcagccatttgctaagaaagcagtggatgtgtttttcccacctgaggcccagactgac
tttcctgtagctatgcagattgggaacaaacatggcgtcatatatttgatcacaaaatac
ggttacattcatctgtatgacctggagtctggagtgtgtatatacatgaaccgcatcagt
gcagagaccatctttgttactgcccctcatgaggccacctcagggatcatcggcgttaat
aagaagggacaggtcttgtcagtgtgtgttgaagaagaaaatatagtcaactatgccacg
aacgttctgcagaaccctgatcttgccctgaggatggctgtgaggtctaatcttgttgga
gctgaggagctatttgcccgaaagttcaacactctttttgcccagggaagttactcggag
gctgcaaaggttgccgcatctgcacccaagggtatcctccgaacagcagaaaccatacgg
aagttccagagtgtcccagcccagccgggtcaggcctctccgcttctccagtattttggt
attcttttggatcagggccagctcaacaagtttgagtctctggagctgtgcaggcctgtc
ctgcaacagggccgcaagcagctcctggagaaatggctcaaggaggacaagctggagtgc
tctgaagaacttggtgacctggtaaaggcttcggacccaacacttgctctcagtgtttat
ctccgagcaaatgtccccaacaaagtcattcagtgctttgcagagacaggacagttccag
aagatagtgttatatgctaagaaggtggggtacacccctgattgggtgtttttgttaagg
aatgtaatgcgagtaaatccggaccagggactacagtttgcccagatgctcgttcaagat
gaggagccactggccaacatcaatcagattgttgatgttttcatggagggcagcctaatt
cagcagtgcacatcctttctgttagatgctttgaagaacaaccgcccagctgaaggacac
ttacaaacacgtctccttgagatgaacctgattcacgctccacaggtagcagatgcgatc
ctggggaaccagatgttcacccactatgatcgggcccatgtcgctcagctgtgtgagaag
gcaggacttctgcagagagcacttgaacactacaccgacctgtacgatatcaaacgagct
gtggtgcacacacatctgctcaaccctgagtggctggtaaactttttcggctccttgtct
gtggatgactctttggagtgtttaagggccatgctgtctgctaacataaggcagaacctg
cagctgtgcgtgcaggtagcatcaaagtatcatgagcagctgggaacccaggcgctagtc
gagctctttgagtccttcaaaagttatgaaggtttgttttacttcctgggctccattgtc
aatttcagccaggagcctgatgttcactttaaatacatccaggctgcttgtaagactggt
caaattaaagaggtggagcgaatttgtagagagagcaactgctacgacgcagagagggtt
aaaaatttcctgaaggaggccaagttaacagaccagcttcccctcatcattgtgtgcgat
cgctttgactttgtccatgatctggtgctctatctttaccgcaacaatttgcagaaatac
attgaaatctatgttcagaaggtgaatcctagtcggttgccagtggtgatcggtggtttg
ttggatgtagactgttctgaggacgtcatcaagaacctgatcatggtggtcagaggacag
ttttccacagatgagctggtggacgaggtggaaaagaggaacaggttgaagcttctgctg
ccatggctggagtcacgcattcatgaaggctgtgaggagccggctacccataatgcattg
gccaagatctacatcgacagtaacaacacaccggagcgctttctgaaggagaacccattc
tatgacagcgccgtggtcgggcggtactgtgagaaaagagacccccacctggcctgtgtg
gcttatgagagggggcagtgtgacctggagctcatcaaagtgtgcaatgagaattcatta
tttaagagtgaagctcgatatctggtacgacggaaagatcctgaactttgggctaaagtg
ttggaggaaaacaacccttacagaaggcagctcatcgatcaggtggtgcagacagctctg
tccgagacccaggatccagaggaggtgtcagtcacagtcaaggccttcatgactgcagac
ctgccaaacgagctaattgagctgctggagaagattgttctggataactctgtcttcagt
gagcacaggaacctccagaatctgctgattttaacagctatcaaagctgaccgcactcgt
gtgatggagtacatcaacaggctagataactacgacgctcctgatatcgctaacatcgct
attagcaatgagctctttgaagaagcgtttgctatttttaagaagtttgatgtgaacacc
tcagccattcaggttttgatcgagcatatagggaacttggatcgagcctacgagtttgcc
gaacgctgtaatgagcctgcagtctggagtcagttagctagagctcagctacacagagac
ctggtcaaagaggccattgactcctatatcaaagctgtggatccatcggcatacatggag
gtggttaatgcagccagcaagaacaataactgggaggacttggtgaagttcctacagatg
gctcgtaaaaaggccagagagtcgtatgtagagacggagctgatttttgctttggctaaa
acaaaccgactggccgagctagaagagtttgtcagtgggcccaataatgctcacattcag
caggtgggggacaggtgctatgatgagggaatgtacgaagcggctaaacttttgtacaac
aacgtgtccaactttgctcgacttgcgtctacattagttcaccttggagagtaccaggca
gctgtggacagcgccaggaaagccaacagcacccggacctggaaggaggtttgctttgca
tgtgttgacggcgaggagtttcggctggcgcagatctgtggtcttcacattgtgatccac
gccgatgagctagaagacctgattagttactatcaggaccgcgggtacttcgaggagctc
attgctctgctggaggccgcgctgggcctggagcgggcccacatggggatgtttactgag
ctcgccatcctctactccaagttcaaacctcagaaaatgagggagcacctggagctcttc
tggtcaagagttaacatcccaaaggttctccgagcagccgagcagtctcatttatgggca
gagctggttttcctttacgataaatatgaggagtatgacaacgcagtcatcactatgatg
aaccatgcaacagatgcatggaaagaagggctgtttaaagacatcattgccaaggttgcc
aatgttgagttgtactataaagctctttttttctacctggaatacaaacctctcctcatt
aatgacctgctgactattttgtctccacggttggaccacaatcgagccgtcagctttttt
tctaagatgaatcagctgaagttggtcaaaccttacttgagatcggtccagaatcacaac
aataaggccgtcaacgaagcgctcaacaacttacttacagaagaggaagactatcagagc
ctgagggcctccatcgatgcttacgataactttgacaccatcggcctggctcagaggtta
gagaaacacgaactgatcgagttcagacgcatcgctgcttatctgtacaaaagaaacaac
cgctggaggcagagtgtggagctttgcaagaaggacaaactatacaaggatgcaatgctc
ttcgctgcagagtccaaggatgcagagctggccgaaactctgctgcagtggttcctggag
gaggacaggaaggagtgctttgccgcctgcctgtttgcctcctatgacctcctccaccct
gatgtggtgctggaacttgcctggaggcacaacataatggactttgccatgccctacttc
attcaagttatgagagagtatctcactaaggttgatgaatttgcagcgaaggtgacggtg
gataaactggaggaggcagaaagccatagaaaaactgaggatgatgtgaaggagcctcag
cagatggtgtttggccagcagctgatgttgcccgccgctgcttctcctgtggctcctcag
ccagcatacccggcttacggctatcctgcccctaacaatgctactcccgccgccgctggt
taccctgctcagcccccctacggctacaacatgtag
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integrated database retrieval system
