Cyprinodon variegatus (sheepshead minnow): 107089739
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Entry
107089739 CDS
T06110
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvg03036
]
107089739 (chd9)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
107089739 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_CHD1_Hrp3
HDA2-3
Chromo_MIT1
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
107089739
NCBI-ProteinID:
XP_015238171
Ensembl:
ENSCVAG00000016195
LinkDB
All DBs
Position
Unknown
AA seq
2995 aa
AA seq
DB search
MDFFDDPNLFVGGLEGLDEDGFHSAPSLVDELNLSAGFEPLQVEALGPGKHQELMTPVSS
QQAVPSYNQSMVHYTSIKAQNPLGQVFSSSQNTGCDIGTQQHGQYHNATISQVAQPNGLF
CSSGSPMWGNQDQNGNVFHHMSQHQQLCHQPLHNQQLHSRQHTQQQHHSGHQRVEQQQRM
QPLQQHSHQQQLLNQHQQITTASSCLQQQQHHSFSFHQGGQASSQQQMHHSQHQAPARES
QFHSRTLPDKPYLDCQNTSLSATCLQPRQQQGNYQLVRGGPAFSGTDSRLSFPIHPSSAV
HSMPTCSVSSAHAYQAAEFPAYPGEPEIPSLSQQSPCRPITTAPITTTVPRLPGTACQFQ
STAHVSQLQSGTAVNQADECPFRALRCSGETQTVCKSEMFEESVSCYQGMMNHLPSEQHM
SCGVINTNGYQAFGDNILPSEAQDGDLEDLDPPDLLPDLLPQLEDAFRQQDESSCSWLES
GQQNGHENGKPPATECKDEKPRKNPNGSSCQVRVLSPTVKSSPSSSSSSSSSSSSSSSSS
SSSSEKRVPRRKHHQMESTVHEKQEKANRIISEAIAKARQRGEKNIPRVMSPESFPSSSA
QFKTHREREHKGNGKARTKEKASRKACIVPSSKPKQKTKIGKIVIKIGKRKKRKPESSEE
ESDDDPPLRYASKDDDSKRRSNRQVKRKKYAEELEARLSDEDVKVIVKAKKTNTAASKEP
AVQLFVENPTEEDAAVVDKIMSSRIIKKEVSPGVMVEVEEFFVKYKNYSYLHCEWATEQQ
LEKDKRIQQKIKRFKMKQAQRALFFTDMDEEPFNPDYVEVDRVLEVSYCEDKDTGEEVVY
YLVKWCSLPYEDSTWELKDDVDQSKIEEFERLQAAKPDSRRVERPPANLWKKREQSREYR
NSNTLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIHRIGIKGPFLIIA
PLSTIANWEREFHTWTHLNVIVYHGSMISRQMLQQYEMYFRDAQGRPIRGAYKFQAVITT
FEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKVLLTGTPLQNTVEE
LFSLLHFLEPGRFPSENNFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEKKLAPKEE
TIIEVELTNIQKKYYRAILEKNFSFLAKGAGQSNMPNLVNTMMELRKCCNHPYLIKGAEE
KILEDFREVHSPTAADFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILE
DYLIQKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCII
FDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMS
GRDNSLGGGTGGGAAQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDIDQILQRRTK
TITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKADIDMDMVNGRNSLVIDTP
RVRKQTRPFSATKDELAELSEGESDSDETKPKLRRNDRPNSYGRTECFRVEKNLLVYGWG
RWKDILNHGRFKKQLTERDVESICRALLAYCLVHYRGDDKIKSFMWDLIAPTEDGRTKEL
QNHLGLSVPVPRGRKGKKMKTQTSSFDIHKAEWLRKHNPEHMLQDDGYKKHLKHHCNKVL
LRVRMLYYLKQEVIGSQAQKVLDGGDSSEVKIWVPDPDHSELPALWWDAVADKCLLLGVF
KHGYEKYNTIRADPTLCFLDRVGRPDEKAIAAEQRSNDFMDGDVDDPEYKPAPALLKDEM
EDDASSPGDLVVSDNAGDAPLLTEGQTAYWPSPSVLTARLRRLITASQRYTKSRQILHIH
QTQSHPQTQQAMMLSAPVCPLAPTLKDTLNPKMAAKIERQQRWTRREEADFYRVVSTFGV
VFDPNLGQFDWTKFRAMARLHKKTDESLQKYLCAFTAMCRRVCRLPPKDGDLAVDPSLTI
QPITEERASRTLYRVELLRQVREQVLRHPLLYERLSLCQMSSDLPVWWEAGTHDRDLLIG
AAKHGVSRTDYHILRDPDLCFMAAQRNYSQVKAAQQQQRTATPLLHTQYQAPSSLPPGSP
LPPPQHRDPDPCGLVPKVEPASEEEVKERQGEGWSPPQLPATPTGLEEKPILGAKDSERQ
MVAARTKPLTPNSTEKKPKKASKRGRREARRGSESDSDRSSSSSSSRSSSSSSSSSSSSS
HSGSSSSSSSSSCSSGSSSSSSSSSSSDDSESEGEEAKKKVPVTASVKGFDEDSVASLST
TQDEMLDSHMSENGVANSSSHPFQGGGYMLAASYWPKDRVIINRLDSICQAVLKGKWPGH
RRVYEPGSTVASFYTTKLLDNANSLCEDPSASPQGSKVTKHVAENKEFSVKLNDQEGGLK
LTFQKQGLPVKRPLEAEEGPQAQQQYLARLHELQSASDTGLADITKPQSSFQTDVHSSHA
VSPSVIPGVSGQMRLNGAVDGQPMVKKRRGRRKNVEGMELLFMNKNKSPINSDPVAPGWG
GIGQVGITGAAVPMNSSQIPADTDTRVPVINLKDGTRLAGDDAPMRKDLDQWLREHPGFV
ADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQIINRKNARKIG
GAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIVPEEVSRRGRR
PKNPLAKAAAAAATPSSAASTLGLNPLLANGILSGMDLGSLQAFQQNLQSLQSLQLTAGL
MGLPPDASNLAASNLAAMFPMMLSGMAGLPNLLNMGGLLGKPTQEVAGGSEERAKGTDTS
GATDQSNAPPHSSETKGERTESSNVTPSSTSSSASSATVTQSASAASAATSHPLSLNPLL
LSSMLYPGMLLTPGLNLPVSAAQPQSSNSDPSTLPPAAPSAPSASQSLPTEAGQPSGKGE
EEGPEEALDEEEEDEESAEPRENSGPECSAKAESSSSESGSSSSSSDDSDSSDED
NT seq
8988 nt
NT seq
+upstream
nt +downstream
nt
atggacttctttgacgatcccaacctctttgttgggggtttggaagggctggatgaagat
ggtttccattcagcaccttcgctcgtggatgagctcaaccttagtgctggtttcgaaccc
ctccaagtggaggcacttggtccagggaagcatcaagaattgatgacaccagtctcttcg
caacaagctgtacccagttacaaccagtccatggttcattatactagcatcaaggcacag
aatccccttggtcaggtattttctagttcccagaatacaggttgcgacattggtactcag
caacatggccagtaccataatgccaccattagccaagtagctcaacccaatgggctgttt
tgcagctctgggagcccaatgtggggcaaccaagaccaaaatgggaatgtgtttcaccac
atgtctcagcatcaacaactttgtcatcagccactgcacaaccagcaacttcacagcaga
caacatactcaacagcagcaccattctggtcatcaacgggtggagcagcagcagagaatg
caacctctacagcagcacagtcatcagcagcagctgcttaaccagcaccaacaaattacc
acagcgagttcttgcctgcagcaacagcagcatcactctttctctttccaccagggaggt
caggctagcagccagcagcagatgcaccattctcagcatcaagcacctgcaagagaatcc
cagttccattccaggactcttccagataagccttatttggattgtcagaacacttctctg
agcgcgacttgcttgcaaccgcgtcaacagcaggggaactaccagttggtcaggggaggt
ccagccttctctggaacagactcccgcctgtcattccccatacatccatcgtctgcagtt
cactccatgcccacatgctctgtcagttcagctcatgcttaccaagcggctgagttccct
gcctatcctggagagccagaaatacccagtctcagtcagcagtctccatgtaggcccatc
actactgcaccaattactactacagtgcctaggctgcctggaactgcatgccagttccag
tccacagcacatgtgagtcagctgcagtccggaacagcagtgaaccaagcagacgagtgt
cccttcagagccttacgctgttctggagaaacccagaccgtctgcaagtcagagatgttt
gaagagtcagtgagttgctatcaaggcatgatgaaccacctgccctctgagcagcacatg
agctgcggggttattaacactaatgggtaccaagcttttggagacaatatcctgccatca
gaagcccaggatggggacttggaagacctggatcctcctgacctcctgcctgacctgctg
cctcagctggaggacgctttcaggcagcaggatgaatccagctgttcttggctggagtca
ggtcagcagaacggacatgagaacgggaaaccaccagctactgaatgcaaggatgagaag
cctcgaaaaaaccccaatggttccagttgtcaggtgcgggtcctcagccccacagtgaag
agcagcccttcatcctcctcctcctcttcgtcgtcttcttcctcatcttcatcctcctcc
agctcctcgtcggagaagagggtgccaaggaggaagcaccatcagatggagtcaactgtg
catgagaagcaggagaaggccaataggataatatcagaggcgatagccaaggcgcgacaa
agaggggagaagaacatcccacgggtcatgagcccggagagcttccccagctcctctgct
cagttcaagactcaccgtgagcgcgagcacaaaggaaatggcaaagcccggaccaaagag
aaggcctccaggaaggcctgcatcgtaccttcatcaaagcccaagcaaaagaccaagatt
gggaaaatagtgatcaagattggaaaaaggaaaaagcgaaagccagagtcttcagaggag
gagtcggatgatgatcccccccttcgttacgcttctaaggatgacgactctaagaggcgg
tcgaatcgccaggtgaagaggaagaaatatgctgaggagctggaagccaggttgtcagat
gaggatgtcaaagtcatagtgaaggccaagaaaaccaacactgctgcatccaaggagcct
gctgttcagctctttgtggagaatccaacagaggaggatgctgctgttgtcgacaaaatc
atgtcttctcgtatcatcaagaaggaggtctctccaggtgtgatggtagaagtggaggag
ttttttgtaaaatacaaaaactactcctaccttcactgtgaatgggccacagagcagcag
ctagaaaaggacaagaggattcagcagaagatcaaacgcttcaagatgaaacaagcacag
agggcgctcttcttcactgatatggatgaggaacctttcaaccccgactatgttgaagtc
gacagagtgctggaggtatcgtactgcgaggacaaagacacaggcgaggaagtggtgtac
tacctggtgaagtggtgttctctgccttatgaggatagcacgtgggagctgaaggacgac
gttgatcaaagcaagattgaagagtttgagcggctgcaggcagccaagccagactcacgc
agagtggagcgacctccagccaacctctggaagaagagggagcaatcgagggaatacagg
aatagcaacactctcagggattaccagctggagggggtcaactggcttcttttcaactgg
tacaacaggcggaactgcatcttggctgacgagatgggcctaggaaagaccatccagtcc
ataacattcctggaagagattcaccgtattggcatcaaagggcccttcctcatcatcgcc
cccctctctactattgcaaactgggagagagaatttcacacctggactcacctcaacgtc
atcgtttaccacggaagcatgattagcaggcagatgctgcagcagtatgagatgtatttc
agggatgcacagggtcgccccattcgaggtgcctacaagttccaggctgttatcaccacg
tttgagatgatcctgggaggctgccccgagctcaatgccatcgagtggcgatgtgtgatc
atcgacgaggcccatcgtctgaagaacaagaactgcaagctacttgaaggcttcaaactc
atgaacctggagcacaaggtcctactgactggaactcctctgcaaaacacagtggaggag
ctttttagtctgctgcacttcctggagccagggcgcttcccttctgagaacaacttcatg
caggagtttggtgacctcaagacagaggagcaggtgcagaagcttcagggcatcctgaag
cccatgatgctgcgtcgtttgaaagaagacgtggagaagaagctggcccctaaagaggaa
accatcattgaggtggagctcaccaacatccagaagaaatactatcgcgccatcctcgag
aagaacttctctttcctggccaaaggggcgggccagtcgaacatgcccaacctggtcaat
accatgatggaattaagaaagtgttgtaaccacccctacctcatcaaaggggctgaagag
aagatcctagaagatttcagggaagtgcacagtcccactgccgctgactttcaccttcag
gccatggttcagtctgctggaaagttggttcttattgataagctgctgcccaagatgaag
gcaggaggccacaaggtgctcatcttctcccagatggtgcgctgtctggatatcttggaa
gactacctcattcagaaaaggtacttgtatgagcgcattgatggccgcgttcgtggaaac
ctgcgtcaggctgccatagatcgcttcagtaagcccgactcggaccgcttcgttttcctg
ctgtgtacaagagccggtggcctgggcatcaacctgactgcagcagatacctgcatcatc
tttgactctgactggaaccctcagaacgacctgcaggctcaggctcgctgtcatcgaatc
ggtcagaacaaggcggtgaaggtgtatcgtctcatcaccaggaactcgtatgagcgagaa
atgtttgaccgggccagcctcaagctgggcctggacaaagccgtgctgcagagcatgagt
ggccgtgataacagccttggaggaggcacaggaggaggggctgctcagcagcagttgtcc
aagaaagaaatcgaggatcttttgcgacgtggtgcttacggagccatcatggatgaggaa
gatgaaggggccaaattctgtgaggaggacattgatcagatcctccaacgcaggacaaag
accatcaccatcgagtctgagggacgaggatccacttttgctaaggcaagttttgtggca
tcagggaaccgcaccgacatctctctggatgatcctaatttctgggacaagtgggccaaa
aaagctgacatcgatatggatatggtcaacggcagaaacagcttggtgatcgacactcca
cgtgtgagaaagcagaccagaccgttcagcgccaccaaagatgagctggcagagctgtcg
gagggggagagtgacagcgatgagaccaagcctaagctcagaagaaacgaccgtcccaac
agttacggccgcacagagtgcttcagggtggaaaagaacttgcttgtttatggatggggt
cgttggaaagatatccttaaccacggtcgtttcaagaagcagttgaccgagcgggatgtg
gagtccatctgcagagccctgctcgcctactgcctggtccattaccgtggcgatgacaaa
ataaagagcttcatgtgggacctgatagctcccactgaagacgggcgcaccaaggagctg
cagaatcacctcggcctgtcagtcccagtacctcggggcagaaagggcaagaagatgaag
acccagactagttcttttgatatccacaaagctgagtggctccggaagcacaaccctgag
cacatgctgcaggacgacggctataagaagcatctgaaacaccactgcaacaaggtgctg
ctccgggtcagaatgctctactacctgaaacaagaggtgatcggaagtcaggcccagaag
gtgctggacggcggcgactccagtgaggttaagatctgggtgccggacccggaccactcg
gagctcccagccctttggtgggatgcagtcgccgataaatgtcttctacttggagtcttc
aagcatggatatgagaagtacaacacaattcgagcagacccaactctgtgcttcttagac
cgcgttggtcggccggatgagaaggccatcgctgctgagcagaggagcaatgacttcatg
gatggggatgtggatgatccagagtataaacctgctccagcccttctgaaagatgagatg
gaggatgacgcctcctcccctggagatttggtggtctctgataatgctggagatgcacct
ctgttgacggaaggccagactgcttactggccctccccctcagtgctcacagccagactg
aggcgactgatcacagcctcccagcgctacacaaagagtcggcagatcctccacatccat
cagactcagtcccaccctcagacccagcaggccatgatgctctctgcccccgtctgccca
ctggcccccacacttaaagacacgcttaaccctaaaatggctgcaaagattgaacgccag
cagagatggaccaggagagaagaagctgatttctatcgggtggtctccacctttggcgtc
gtttttgacccaaacctcgggcagtttgactggaccaagtttagggccatggctcggttg
cacaagaaaacagacgagagccttcagaaatacctctgcgccttcaccgccatgtgcagg
agggtgtgccgcctgccacccaaagatggagatttggcagtggatccttccctgaccatc
cagccaatcacagaggagcgagcatcccgtaccctgtacagagtagagctgcttcgacag
gtcagggaacaagtcctcagacacccgttactgtatgaacgcctgtccctgtgccagatg
agctctgatcttcctgtgtggtgggaggctgggactcacgaccgtgacctgctgattggt
gctgcaaagcacggcgtcagtcggacggattatcacattcttagagaccccgatctctgc
ttcatggcagcccaacgcaactacagccaggtgaaggctgcccagcagcagcagcgcaca
gcgaccccgctgctgcatacccagtatcaggctcccagctccttaccgccaggttcccca
ctgcctccacctcaacacagagaccctgacccctgcggacttgttccaaaagtggaacca
gcctcggaggaggaggtaaaagaaaggcagggggagggatggagcccccctcagctgcca
gcgactcccactggcctggaggaaaagccgattttaggggcgaaggacagcgagaggcaa
atggtggcggcgcgaaccaaaccgctaacgcccaactccacagaaaagaaacccaagaag
gcgagcaagaggggccgcagggaggcccggcgaggctccgagtccgactcggatcgctcc
tcctccagctcttcctcacgctcatcttcatcgtcttcatcctcctcttcctcctcctcg
cactctggctcaagctcttcctcctcctcatcgtcttgctcctccggctcttcttcgtca
tcgtcgtcctcttcctcttctgatgacagtgaaagcgagggagaggaagccaagaagaaa
gtgcctgtaaccgcgagtgttaaaggtttcgacgaggacagcgtggcgtctctgagcacc
acccaggacgaaatgctagactctcacatgtctgagaatggagtcgcaaacagctcctcc
catcctttccagggaggaggctacatgttggctgcatcgtactggcccaaggaccgtgtg
ataatcaaccgcctggacagcatctgccaggctgtgcttaagggcaagtggcctggccac
cgccgggtctatgagcccggcagcacggtcgcctccttctacaccaccaagctgctggac
aacgccaacagcctgtgcgaggacccctctgcctctccacaagggtcaaaggtgaccaag
catgttgcagaaaacaaggagttctcagtaaaactcaatgatcaggagggcggactaaag
ctgacctttcagaaacagggcctaccggtaaagaggcccctagaggccgaagagggccca
caggcccagcagcagtatctggcccggctccatgagctgcaaagcgcttcagacacaggc
ctggctgacataaccaagccccaaagcagcttccagactgacgttcacagcagccatgct
gtctctccttcagttattccgggtgttagtggtcagatgaggctgaatggagcagtggac
ggtcagcccatggttaagaagagaaggggaagaaggaagaatgttgaaggaatggagctg
ctcttcatgaacaagaataaatcacctattaattcagatccggtggctccaggatggggt
ggaattggtcaggtgggaatcacaggagctgctgtaccaatgaactccagtcagatccct
gcagacacagacaccagggtccctgttatcaaccttaaagatggcacccgactagcaggg
gacgacgctcctatgaggaaagatctagaccagtggcttagggagcaccctggctttgtg
gcggatacaggagcttttatcccaggggtgaataagatgcagatgcagttccacttccag
gatggacgaccgaagcagaagaggcaccgctgcaggaatcccaacaagatcgacgtgaac
agtctaacaggggaggaaagggtgcagatcataaacaggaaaaatgctcgaaagatcggt
ggagcttttgctcctcctctgaaggatctgtgccggttccttcaggaaaatccagagtat
ggggtcccaccagaatgggctgacgtggttaaacagtcgggttatctccctgagagcatg
tttgaccggatcctgacgggacccatcgttcctgaggaggtcagccgacgaggacgccga
cccaaaaaccctctggccaaggctgcggcagccgcagcgacgcccagctcagcagcctcc
accctgggtttgaaccctttgctggccaacggcatcctctctggaatggacctcggcagt
ctgcaggccttccagcaaaacctccaaagtttacagtccctgcagctgaccgcaggcctc
atggggctgccgcccgatgcaagcaacctggctgctagtaaccttgctgccatgtttccc
atgatgctttctggcatggcaggattgccaaacctgctcaacatgggcggcctgcttgga
aaaccgactcaggaagttgcaggaggttctgaagagagggcgaagggaaccgacacgagt
ggagctacggatcagtcgaatgccccgcctcatagttcagaaaccaaaggagaaaggaca
gagagctccaacgtgactccttcctccacttccagctctgcttcctctgccaccgtcaca
caaagtgcttcagctgcctctgcagctaccagtcacccactttctcttaaccccttatta
ctctccagtatgctttacccagggatgcttctcactccaggccttaaccttcctgtgtct
gccgcacagccacagagctcaaacagcgacccttcaacccttccacccgctgctccttcc
gctccttcagcctcccagtcgttaccgacggaggcggggcagccatcaggaaagggtgaa
gaggaggggccagaggaggctttggatgaagaggaggaggacgaggaatctgcagaaccg
agagaaaacagtggtcccgaatgttcagcgaaagcggagtcatcttcatcagagtctggg
agctcctcctcatcctccgatgattcagactccagtgacgaggactga
DBGET
integrated database retrieval system
