Cyprinodon variegatus (sheepshead minnow): 107089762
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Entry
107089762 CDS
T06110
Symbol
nup188
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107089762 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107089762 (nup188)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107089762 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup192
Nup188_SH3-like
Peptidase_C14
Motif
Other DBs
NCBI-GeneID:
107089762
NCBI-ProteinID:
XP_015238204
Ensembl:
ENSCVAG00000015370
LinkDB
All DBs
Position
Unknown
AA seq
1743 aa
AA seq
DB search
MAESEMSVRSCRELWTILLGRSALREPAQIEGELDRNWDRLHQGLGYYKLPSSSSAGKVK
DNKDVAQPLKDFGFRISKLLNLDEQQSVQLLQWYLQEDYRGTQDSLKVVLKDERQSQALL
IKIADYYYEERMCLLRCVLLLLTYFQDERHPYRSEYSNCVNKLEKDLVSNYQSQFENLFK
AEAPTWETHGNLMTERQVSRWFMQCLREQSLVLEIIFLYYAYFEMSPSDLLKFTKMFKEQ
GFGLRQTNRHLVDKSMDAIVDRIGYLSSLILVEGMDIDFLHKCALEDCTEQHQFSGAPDV
VKEMDQLLLTFGDIPHHGPVLLAWVLLRHTLRPDESSPVVRRIGNTALQLGVFKYLSAML
KGLGVSGNNCTASTAKMCIYGLLSFVITSFEEESLQANGVEESHLIEAACEVLSAPSLAE
VFWEMKPNRGLGMILDSAAGMFPHKIGPLLQLLTALVSNKSTVKKVYNFLDKMSFYTQVY
KHKPNDIISKDDETLWRRQTPKLLYPLGTGQTNLWMPQGVLGQVMIAGEQGYMVRWDYSY
SAWTLFTCEVEMLLHVVSTADVLAHCARVKPILDLVHKIISVDWTVSDCLLPLTSRIYML
LQRLTSVINPPVDVIASCVSCLSVLAARMPGKVWSSLHHTGFLPFASNPLTNMAQCISAE
GMKAGNYGNLLVQIEQPRGEYAVTIAFLRLITTLVKGQLGNTQSKGLIPCVLLVLKEMLP
TYHKWRYNTYGVRERIGCYILELIHAILNLSPEGEEQGSTPTLQSLCIYSLANTEAGQAV
VNIMGVGVDTIDVVLAAQPSSSGSEGPGQILIQTVKLAFSVTNNVIRLKPPSDAVSPLEQ
ALTHHGGQGSNLIVVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRD
AFLARLQSKTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGNEGSKEFLVGEWSCL
HVVLDLIDSKQQGKYWCPPLLHRAALAFLLALWQDRRDSAISVLRTKERFWENLTTPLFG
TLTPSSDTAEPCVLEACAFVMKIIGLEIYYVVSGSLEQSLKDGLQKFSNARRYDYWSQYV
KSLVCHVAETEEDGICFFQETQMLISAWRMLLILSTTHADVMHLTEDSTKLKLFMDVLDG
TKAALTTPTSMACFRLGSMMATLLLILLKQWRSVVAAAPDILSPLSIILESVLQADHQMM
DRTKAKIFSALISVLQIQGLNGGDISQLPQLLLSVCETVKDEALALIDNTRHMSQMGDML
EQEDSMETDCPRSLQKDQRDGVCVLALHLAKELCRTDEDGEHWVSVMRKVPVLPSVLSAV
EISLRCKHNLYFTEAALHLLLTLARTPQGAAAVAGAGVVQTICLPLLSVYEVSSNGASQS
FSRKSQDSACWPGVYRLCMSLMESLLKTLRYNFINEALDFVGVHQERILQCLNAVRTVQS
LSCLDEADHTVGFLLQLSSFCKEWQFHLPNLLRDVQINLCYLCQTCTYLLHSKKMLHHYL
QSKNGEALPPGPRAQRPPQTLSKDAASGGGDREEAEQKALLAVQCSLLKILSKTLATLQH
FTPDCCQILLDQCMDLAEYRTLFVLSFTTPAFDPDVAPSFGTLLATINVALGMLSEMEKR
KEPASLSIASLASLEEIQALKSLLMFTMENCFYVLISQAVRCLKDPTILPRDKQRLKQEL
SSELSTLLSSLSRHFRRGSPSSPASGILPSIQSKPPTPGSKASHEGQEHIIQLVQAFVRL
VQR
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatcggagatgagcgttaggagctgtcgagaattatggactattttgttgggg
agatctgcattgagggagccggctcagatagagggagagcttgacagaaactgggacaga
ctgcatcaaggacttggttactacaagctccccagctcatcctctgctggaaaagtgaag
gataacaaagatgtagcacagcctctaaaggactttgggttcaggatcagtaaattgttg
aatctggacgagcagcagagcgtgcagcttttacagtggtacctgcaggaggactacaga
ggaactcaggactcgttaaaagttgttctgaaggatgaacggcaaagccaggcacttctc
attaagatagctgattactattatgaggagcgcatgtgtctgcttagatgtgttctcctc
ctgctcacatactttcaggatgagcgccatccctaccggtctgagtacagtaactgtgtc
aacaaattggagaaagacctggtgagcaactatcagtcgcagtttgagaatctgttcaag
gccgaagcaccgacatgggaaacccatggcaacctcatgactgagcggcaggtctcacgc
tggtttatgcagtgtttgagagaacaatccctggtgctggagatcatcttcctgtactat
gcgtactttgagatgagcccatctgaccttctgaaatttaccaaaatgttcaaagaacaa
ggcttcggcttacggcagaccaacagacacctagtagacaagagcatggacgctatagtg
gacagaattggatatttgagctctctcatcctggtggagggaatggacatcgattttctg
cacaagtgcgctctggaggattgcacagagcagcatcagttttctggggcccctgatgtc
gttaaggagatggatcagctgctgttgacatttggtgacatccctcatcatggacccgtg
ttgctggcctgggtcctgctgagacacaccctcagaccggatgagtccagtcctgtggtc
aggaggattggcaacactgctctgcagctgggggtcttcaagtacctctcagccatgctg
aaggggcttggagtctcaggaaataattgtacagcaagcacagccaaaatgtgtatctac
ggcctgctttcatttgtgattacctcgtttgaagaagagagcttacaggctaatggtgtg
gaggaatctcacctgatagaagctgcctgtgaggtcctctctgctcccagtttagctgaa
gtcttttgggaaatgaagccaaacagggggctggggatgatcctggacagcgcagctggg
atgttcccccacaagattggacctctgctgcagcttctgaccgcactcgtgtccaacaag
tcgactgtaaagaaggtgtataacttcttggataagatgtccttctacacacaagtttac
aaacataagcccaatgacataatttccaaggatgatgagacgttatggaggcgacagact
cctaaacttctctaccctctgggcacggggcagacgaacctgtggatgccccagggagtg
ctgggtcaggtgatgatagccggggagcagggctacatggtgaggtgggactactcgtac
agcgcttggactctattcacctgcgaggtggagatgctgctgcacgtcgtctccactgca
gatgttctcgctcactgtgctcgtgtgaagcccatcctggatctggtccataagatcatc
agcgtggactggactgtgtctgactgtttgttgcctctaacttcacgcatttacatgttg
ctgcagaggttaacgtcggtcatcaaccctccagtggatgtgattgcctcctgtgtgagt
tgcctctctgtccttgctgccaggatgccagggaaggtgtggtctagtctgcatcacacc
ggtttcctccccttcgcctccaaccctctgaccaacatggcccagtgtatcagtgctgag
gggatgaaggcgggtaactacggcaacctgttggtgcagattgagcagcccagaggggag
tatgctgtcaccattgccttccttcgtctcattacaaccttagtgaagggacagcttgga
aacactcaaagcaaagggctgattccctgtgtgctgctggtgttaaaggagatgctacct
acataccataagtggcgttataatacctatggagtcagagagagaataggctgctatatc
ttggagttgatacacgccattctcaatctgagcccggaaggggaggagcagggcagcact
cccaccctgcagtccctttgtatctacagtttagcaaacacagaagctggacaggccgtc
gtcaacatcatgggtgttggagtggacaccatagatgttgtcctggctgcacagccaagc
agctctggctctgaaggtccgggtcagattctgatccagacggtcaaactggccttctct
gtcaccaacaacgtgatccgtctgaagcccccgtccgatgcggtgtcccccctggagcaa
gcgctgacgcatcacggcggccagggcagtaacctcatagtggtcctagccaaatatatt
taccacaaacatgatccagctctgccccggcttgccatccagctcctaaagcggctcgcc
acagtggctcccatgtccgtatatgcctgccttggcagcgatgcagcggctatcagagat
gcatttcttgcccggctgcagagcaaaacggaggacatgaggatcaaggtgatgatcctg
gagttcctcacagttgctgtggaaactcagccaggcctcattgaactgttcctcaacctg
gaggtgaaagatggaaacgaggggtctaaggagtttctagtgggggagtggagctgcctc
catgtggtgttggatctaatcgactccaagcagcagggaaagtattggtgtcctccgctg
ctccaccgggcagctctggctttcctcctggccctgtggcaggatcgcagagacagcgcc
atatctgtccttcgcaccaaggaaagattttgggagaatttgacgactcctctatttgga
accctgaccccatcatcggacaccgcagagccgtgtgttctggaggcctgtgcgtttgtc
atgaaaatcatcggtctggagatctactacgtcgtcagtggttctttggagcagtccctg
aaagacggccttcagaagttctcaaacgcacggcgctatgactactggtctcagtatgtg
aagtccttggtttgccatgtggccgagactgaagaggacggtatctgcttcttccaagag
acacagatgctgatttctgcttggaggatgctgctgattctgtccaccacacatgctgat
gtgatgcatctaacggaagattcaaccaagcttaagctgtttatggatgttctagatggg
actaaagctgctctgaccacacccacatccatggcttgttttcggctgggatccatgatg
gctactctcctgcttatcctcctgaagcagtggagaagtgtggtagcagcggctcctgac
atcctttctccactctccatcattctggagagcgtcctgcaggctgaccaccaaatgatg
gacagaaccaaagccaaaattttctctgctctcatctccgtgctgcagattcagggactc
aatggtggagatatttcccagctgccccagctgttgctctcagtgtgtgagacggtgaag
gacgaggcgctggcgctcattgacaacacacgacacatgagtcagatgggagacatgctg
gagcaggaggacagcatggagacggactgtcctcgcagtctgcagaaggaccagagagac
ggggtgtgtgtgcttgctttgcacttagccaaagagctgtgccgcaccgatgaggatggt
gagcactgggtgtcggtgatgaggaaggtcccggtcctaccgtcagtcctgagcgccgtg
gagatcagtctgcgctgcaaacacaacctctacttcaccgaagccgcgctccacctgctc
ctgactttagcccgcactcctcagggggcagcagctgttgctggagcaggagttgttcaa
accatttgcctcccccttctgagtgtgtatgaggtctcctctaacggtgcatcacagagc
ttctctaggaagtcgcaggactctgcctgctggccaggcgtgtaccgcctctgcatgtct
ctcatggagagcctcctcaagactcttcgctacaacttcatcaatgaagccctggacttc
gttggagtgcatcaggagcgcatattacagtgtctgaacgcggtgcggacggtgcaaagc
ctttcctgtttagacgaggcggatcacacggtgggatttctgctgcagctctccagcttc
tgcaaagagtggcagtttcatctccccaatctgctcagagacgtgcagataaacctgtgt
tacctgtgccagacatgcacatacctgctccacagcaaaaagatgctccaccattaccta
cagtctaagaatggtgaagcgttgcctcctggccctcgagctcagcggcctcctcagacc
ttgagtaaagatgcagcatcaggaggaggagacagagaggaggctgagcagaaggccttg
ttggccgtgcagtgcagcctgctgaagatcctcagtaaaactctggctactttgcagcac
ttcactccagactgctgccagattctgctggaccagtgtatggacctggctgagtacagg
accctgtttgtgctcagcttcacaactcctgcattcgaccccgatgtggcgccatcattt
gggaccctgctggccaccatcaatgtggccctgggcatgctgagtgagatggaaaagagg
aaggagccagcatctctgagcatagcttctctggcttcattggaggagatccaggctctg
aagtccttgctgatgtttaccatggagaactgcttctacgttctcatctctcaggctgtt
cgctgtctcaaagatccaaccatcctccctcgagacaaacagaggctcaaacaggagctc
agctctgaactgagcactcttctctccagcctgtcccgccacttcaggaggggttcacca
tcttccccagctagcggcatcctgccctctattcagtccaaaccgcccacccccggctcc
aaggccagccatgaaggccaggagcacatcatccagctggttcaggccttcgtcagactt
gttcaaagataa
DBGET
integrated database retrieval system
