Cyprinodon variegatus (sheepshead minnow): 107090110
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Entry
107090110 CDS
T06110
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107090110
Transcription factors [BR:
cvg03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
107090110
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
107090110
NCBI-ProteinID:
XP_015238788
Ensembl:
ENSCVAG00000005555
UniProt:
A0A3Q2CGU6
LinkDB
All DBs
Position
Unknown
AA seq
344 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTSTGPTGPNGGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPSGGGGVGLSVGMNSSGVGQRLESPGGHGGSAGSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPGSGAHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNSQ
SYMNASPSSYGGITYTQHQGSAVSSSAAMGTLGSLVKSEPSVSPPVSGTHSRGPCPGDLR
EMISMYLPTGEPGDPSMQSRLHALPQHYQSAAAGVNGTVPLTHI
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagactgaccttcattcccccggtccccaaacgaacacgagt
acggggccaacggggccgaacgggggctccaaagccaaccaagaacgcgtgaagagaccc
atgaacgcgttcatggtgtggtcccggggccagcggaggaagatggcacaggagaacccc
aagatgcacaactcggagatcagcaagcgcctcggtgctgagtggaaagtgatgtccgag
gcggagaagcgtcccttcatcgatgaggcgaagcggctgcgtgccatgcacatgaaggag
catccggattacaagtaccggccgcggcgaaagacgaagaccctgttaaagaaggacaaa
tactcactggccggcgggctgctttccgggcccagcggtggcggtggggtcggtttaagc
gtcggtatgaactcatccggggtcggacagaggttagagagcccagggggtcacggagga
tccgccggttccggctacgcgcacatgaacggctgggcaaacggtgcgtactcgggacag
gtcgccgcagcagccgcggccgctgcgatgatgcaggaagcgcagctcgcctacagccag
caccctggcagcggggcgcaccaccatcaccactcacaccaccaccactcccacaacccg
cagcccatgcaccgctacgacatgactgcccttcagtacagccccatctcgaactctcag
agctacatgaacgcctccccgtccagctatggcgggatcacctacacgcagcaccagggc
tccgccgtctcctcctcggctgccatggggacactgggatcgctggttaagtcggaaccg
agcgtgagtccacccgtcagcggcacgcactctcggggtccctgccctggagacttgagg
gagatgataagcatgtatttaccaaccggggagccgggggacccgtccatgcagagcaga
ctgcacgccttgccgcagcattaccagagcgccgcggctggagtgaacgggacggtccct
ctgacgcacatttag
DBGET
integrated database retrieval system
