Cyprinodon variegatus (sheepshead minnow): 107090245
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Entry
107090245 CDS
T06110
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03030
DNA replication
cvg03420
Nucleotide excision repair
cvg03430
Mismatch repair
cvg03440
Homologous recombination
cvg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107090245 (rpa1)
03420 Nucleotide excision repair
107090245 (rpa1)
03430 Mismatch repair
107090245 (rpa1)
03440 Homologous recombination
107090245 (rpa1)
03460 Fanconi anemia pathway
107090245 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107090245 (rpa1)
03032 DNA replication proteins [BR:
cvg03032
]
107090245 (rpa1)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107090245 (rpa1)
Transcription factors [BR:
cvg03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107090245 (rpa1)
DNA replication proteins [BR:
cvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107090245 (rpa1)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107090245 (rpa1)
MMR (mismatch excision repair)
107090245 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
107090245 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
OB_MEIOB_N
CATSPERD-E_C
IBR
Motif
Other DBs
NCBI-GeneID:
107090245
NCBI-ProteinID:
XP_015239008
Ensembl:
ENSCVAG00000019431
UniProt:
A0A3Q2DCD2
LinkDB
All DBs
Position
Unknown
AA seq
606 aa
AA seq
DB search
MANLSAGAIEALANGSGWNEAVLQLVNIRRLDGGNGPARFRVMMSDGRHTLSSFMLSTQL
NYMAEENILVPNCVCLLKRQVTNMLKDGRRVVIILEIQVLKPAEEVGGKIGDPTPYSDGQ
SKGQQPAPAPAPAPVPETRQPLQQQNRNEVNRNLNRDFMKKVPSALPDTPGGGSKVVPIA
SLNPYQSKWTIRARVTNKSSIRTWSNARGEGKLFSMEMVDESGEIRVTGFNQEVDKFFSL
IEVGKVYYVSRGSLKIANKQYTSVKNDYEMTLNGESTVIPCEDSCDVPMVQCDFVSIGDL
ENREKDAIVDVIGVCRSVDEVTKLTTKSNREVSKRTLSLMDMSGKLVNVTLWGEEAEKFD
GSGQPIVAIKGAKLSDYGGRSLSASFSSTMMINPDIPEAYKLRGWFDKEGHALEGQSLTE
VRGGSGNYMENWKTLADVKSEHLGHGDKADYYSCIATIVFLRKENCLYQACPSQDCNKKV
IDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQL
KDSNESAFDEIFQHANFNTFVFRNRVKLETYNDESRIKATVMDVKPVDHREYSKRLIMNI
RKLGAK
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctttcagcgggggcaatagaggctttagcaaatggtagcggttggaacgag
gcagtgcttcagttggtgaatatacgcagacttgatggtggaaatgggcccgctcgcttt
agggtgatgatgagcgatggacgacacacactttcatcctttatgctctcaactcagcta
aactacatggccgaggaaaacattctggttccaaactgtgtgtgcctcctcaagaggcag
gtgacaaatatgctcaaagatggacgacgagtggtcatcattttagaaattcaggtcctg
aagcctgctgaagaggttggtggtaaaatcggagaccctacaccttactctgatggtcag
agtaaagggcagcagccagctccagccccagctccagctccagtgcctgaaaccagacag
ccactgcagcagcaaaatagaaatgaagtgaacaggaatttaaatcgagacttcatgaag
aaggttccctctgctttgcctgatactccagggggtggctccaaagttgtccccatcgct
agtctcaacccttaccagtccaagtggacaatccgtgctcgtgtaaccaacaagagctcc
attcgtacgtggagcaacgctcgcggcgaaggaaagctcttctcgatggagatggtagat
gagagcggagaaatccgtgtgactggttttaaccaagaagttgacaagtttttctctctg
atcgaggttggcaaggtctactatgtctccaggggctccctaaagatcgcaaacaagcag
tacacatcagtgaagaacgactatgaaatgactctcaatggagagtctaccgtcattccc
tgtgaggacagctgcgatgttcccatggtgcagtgtgactttgtctccattggggacttg
gaaaacagagaaaaggatgccattgttgacgtgattggagtatgtagaagtgtggacgag
gtgaccaaactcacaaccaagtccaaccgggaagtatctaagagaacattgagtctgatg
gacatgtctgggaagctggtgaatgtcacactgtggggagaggaagcagaaaagtttgac
ggctctggacagccgattgtagccataaaaggggcaaagctttcggactatggaggccgc
tcactttctgcatccttcagcagcaccatgatgataaacccagatatcccagaggcatac
aagctcagaggctggttcgacaaagaaggccatgccttggaggggcagtcgctgacggag
gtgagaggcggcagcggaaattacatggaaaactggaagacactggctgatgttaagtcg
gagcatcttggacacggcgacaaggctgactactattcctgcatagccaccatagttttt
ctgcgcaaggagaactgcctttatcaggcctgcccaagccaggactgcaacaaaaaagtg
attgaccaacagaatggcatgttccgctgtgagaagtgtgataaagagtttcctaacttc
aagtaccgcctcattctatctgccaacattgcggattatggcgacaaccagtgggtaact
tgcttccaggagagtgcagaggccattctgggccagaatgcagcttacttgggccagctc
aaggactctaatgaatcagcatttgatgagatctttcagcatgcaaacttcaacacgttt
gtcttccgcaacagagtgaagctggaaacgtataatgacgaatccaggatcaaggccaca
gtgatggacgtgaagcctgttgaccacagagagtacagcaagaggctgatcatgaacata
cggaaacttggcgccaagtag
DBGET
integrated database retrieval system
