Cyprinodon variegatus (sheepshead minnow): 107090428
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Entry
107090428 CDS
T06110
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107090428 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107090428 (sf3b3)
03041 Spliceosome [BR:
cvg03041
]
107090428 (sf3b3)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107090428 (sf3b3)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107090428 (sf3b3)
Spliceosome [BR:
cvg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107090428 (sf3b3)
Complex B
107090428 (sf3b3)
Complex C
U2 SnRNP specific factors
107090428 (sf3b3)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
107090428 (sf3b3)
TFTC complex
107090428 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
107090428
NCBI-ProteinID:
XP_015239284
Ensembl:
ENSCVAG00000010459
UniProt:
A0A3Q2E046
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IVRSLMAFRLTGGSKDYIVVGSDSGRIVILEYHPSKNQFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDEIGEKGTV
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTETTKAQRKQQMAEEMVEAAGEDERELAAEMAA
GFLNENLPEAIFGSPKAGAGQWASLVRLINPIQGSTLDQVQLEQNEAAFSVAVCRFPNTG
DDWYVLVGVARDMILNPRSVGGGFIYTYRLNDEGEKLEFVHKTPVEDVPLAIAPFQGRIL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIYTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVVVNYHIGETILSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaacatcacactgcagcgggccactggcatcacccatgccattcatgga
aacttctcaggaaccaagatgcaggagattgttgtttccagagggaagatcttggaattg
ttgcgccctgatgccaacacaggaaaggtgcacaccctcctcacaatggaagtgttcggc
attgtcagatcgctgatggccttcagactcacaggaggaagtaaagattacattgttgtg
ggaagcgacagtggtcgcatcgttatcctggagtatcacccatcaaaaaaccagtttgag
aaggtccaccaggaaacgtttgggaagagcggctgccggcgcatcgttccaggacagttc
ctggctgtcgacccaaagggaagagctgtgatgatcggagcgatagagaagcagaagctg
gtttacatcctgaacagagacgctgctgccaggctcaccatctcttctcctctggaagct
cataaagccaacacgctggtttaccacgtggtcggagtcgacgttggctttgagaatccc
atgtttgcctgtttggaaatggactacgaggaagccgacaacgacccgacaggagaagct
gctgcaaacacccagcagaccctgaccttttacgagctggatctgggcctgaaccacgtg
gttcggaagtacagcgaggctttggaggagcatggaaacttcctgatcactgttcccggc
ggttcagacggacccagcggcgtcctgatctgctctgagaactacatcacctacaagaac
tttggagaccagccagacatccgctgtcccatccctcgccgcaggaatgatctggacgac
ccggagcgcggcatgatatttgtctgctcagccacccacaagaccaagtccatgttcttc
ttcctggctcagacggagcagggggacatctttaaggtcacgctggaaacggacgaggaa
atggtcactgaaatccgcctgaaatactttgacacaatccccgtggcgacggcgatgtgc
gtgctgaagactggcttcctgtttgtggcctctgagtttggaaaccattatctttaccaa
atcgctcacctgggagacgacgacgaggagccagagttctcctcagccatgccgctggag
gagggagacaccttcttctttcagccgcgaccgctgaaaaacttggttctggtggatgag
caggagaacctgtcgcccatcatgtcctgtcagatcgcagatctggctaacgaagacacg
cctcagctgtatgtggcctgtggacgtggcccgaggtccaccctgagggtcctccgacac
ggactagaggtttcagagatggctgtgtccgagctgcccggtaaccccaacgccgtgtgg
accgtacgccgccacgttgaagacgagtttgatgcctacatcatcgtgtctttcgtcaac
gctacgctggttctgtccatcggagagacggtggaggaagtcacagactctgggtttctg
ggaacgacgcccaccctttcctgctctctgctgggggaagacgccctggtgcaggtttac
ccggacggcattcgtcacatccgcgcagacaagcgcgtgaacgagtggaagactcctggc
aaaaaaaccatcgtccgctgcgccgtgaaccagcggcaggtggtcatcgccctgaccgga
ggggagctcgtctacttcgagatggacccgtcgggccagctgaacgagtacacggagcgg
aaggagatgtctgcagatgtggtgtgcatgagtctggccaacgtaccgcctggagagcag
cgttcccgcttcctggctgtgggactggtggacaacacggtccgaatcatctccctggac
ccttcggactgcctgcagccgctgagcatgcaggcccttcctgctcagcccgagagtctg
tgcatcgtcgagatgggaggtgttgagaaacaggatgaaatcggagagaaaggcaccgtc
ggcttcctctacctcaacattggcctgcagaacggtgtgctgctgaggacagtcctggac
ccggtaaccggcgacctgtccgacaccagaactcggtacctggggtcgcgaccggttaag
ctgttcagggtccggatgcagggacaggaggccgtgctggccatgtccagccgatcgtgg
ctcagctactcgtatcagtcccgcttccatcttactccgctctcctacgagacgctggag
tacgcctctggcttcgcctcagagcagtgtcccgaaggcatagtggccatctccaccaac
accctacgaatcctggcgttggagaaactgggagccgtcttcaaccaggtggctttccct
ctgcagtacacgcccaggaagtttgtgatccacccagaaaccaacaacctgattctgata
gagaccgaccacaacgcctacacagagaccaccaaagctcagaggaagcagcagatggct
gaggagatggtggaggcggccggcgaggatgagcgagagttggctgccgagatggctgcg
gggttcctcaacgagaatctcccagaggccatttttggttcacccaaagccggcgcggga
cagtgggcgtcgctggtgcggctgatcaatcccatccagggttccactctggaccaggtg
cagctggagcagaacgaagctgccttcagtgtggcggtctgccgttttcccaacactgga
gatgattggtacgtcttggtgggagtggccagggacatgatcctcaaccccaggtcagtc
ggcggaggtttcatctacacgtatcggctcaacgatgaaggagagaagctggagtttgtg
cacaagactccggtcgaggacgtgccattggccatcgcgcctttccagggacgcatcctg
gtcggagtcggaaaactgctgagaatctacgaccttggcaaaaagaagctgctgcgaaag
tgtgagaacaagcacgttcccaacctggtgacgggcatctacaccatcggccagcgcgtc
atcgtgtctgatgtccaggagagcctgttctgggtccgctaccgccgcaacgagaaccag
ctgatcatcttcgccgacgacacatatccccgctgggtgaccacggcctgtctgctggac
tacgacaccatggcgtctgctgacaagtttggcaacatcagcatcgtgcgtcttcctccc
aacaccagcgatgatgttgatgaagaccccacaggaaacaaggcgctgtgggatagaggt
ctcctgaacggagcatctcagaaggctgaggtcgtagtgaactaccacatcggagagacg
attttatcgctgcagaagaccacgctgatccccggaggctccgagtcgctggtctacacc
acgctgtcaggaggcatcggcatcctggtcccgttcacgtcgcacgaggatcacgacttc
ttccagcacctggagatgcacatgcgctccgagttcccgccgctctgcggcagagatcac
ctcagcttcaggtcctactacttcccagtgaagaacgtgatcgatggagatctgtgtgag
cagttcaacagcatggatccacacaagcagaaaagtgtagccgaggagttggaccgaact
cctccagaggtgtccaagaagctggaggacatccgcactcgttacgctttctag
DBGET
integrated database retrieval system
