Cyprinodon variegatus (sheepshead minnow): 107090526
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Entry
107090526 CDS
T06110
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013
Nucleocytoplasmic transport
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107090526 (upf2)
03015 mRNA surveillance pathway
107090526 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107090526 (upf2)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107090526 (upf2)
mRNA cycle factors
P-body specific factors
107090526 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
107090526
NCBI-ProteinID:
XP_015239428
Ensembl:
ENSCVAG00000006167
UniProt:
A0A3Q2DVT8
LinkDB
All DBs
Position
Unknown
AA seq
1266 aa
AA seq
DB search
MDEKDASCFSNKEKEKDIDEERRPASARDKAKEEAKASSKKDVGKEEKRKRLEEEKKKKE
EKERKKKEEEKQKAEEDQKKKEEEEKKQQEELQRKLEEDEAKRQREEEAALLKEKQEGHQ
LHQEAWERHQSRKELRSKNQNAHESRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQQRDVL
SNDFSSLNLSKYIGEAVSSLVEAKLKISDVGCAVHLCSLFHQRYTEFAPLLLQAWKKHFE
ARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDRETHTHVSVVI
SFCKHCGDDIAGLVPRKVKLAAEKFCLTFPPSEIISTEKQQPFQNLLREYFTSLTKHLKK
DHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTHSLADLLDENMPELPQ
DKTVQEEHGPGIDIFTPGKPGEYELEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKS
GLSKDKEDSKDGREGKDASTTEDLELELEALDIADEPLELEGGDEVESEELAKKLLDEQE
QEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVP
RQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGE
LSKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLEQMM
RKKQAQHLDARYVTMVENAYYYCNPPPIEKAVKKKRPPLQEYIRKLLYKDLSKVTTEKVL
RQMRKLPWQDPEVKGYLICCMINIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLED
IRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVVFRTLFSFISFGVNQDGSPSPLDP
PEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSVDVWTKDHPFPIDI
DYMISDTLELLRPKMRLSCSLDEATKQVADLEREVLVKLGMAMEKDGRSSAMSEGEPLDE
EDDDDDDEEGAADTEEQSGNESEMNEQEEDEGSENEEEERDEEEEENTDYLTDSNKENET
DEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKS
QLKKGGSGQQCMGEGEADISETMQFVMLTRKGNKQQYKILNVPLSSHLAANHFNQQQAEQ
EERMRMKKLTLDINERQEQEDYQEMMQSFAQRPAPANTNRERRPRYQHPKGAPNADLIFK
TGGRRR
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaaagacgctagctgcttcagcaacaaagaaaaagagaaggatatagatgaa
gagaggaggcccgcatctgctcgagacaaagccaaagaagaggcgaaagcaagcagcaaa
aaggatgtcggcaaagaggagaagagaaagcgtttagaggaggaaaagaagaagaaagag
gaaaaggagcggaagaagaaagaggaggaaaagcagaaagcagaggaggatcagaagaaa
aaggaggaggaggagaagaagcagcaggaggagctgcagagaaagcttgaagaagatgaa
gccaaacgacagcgggaggaggaggcggcgctgctcaaagaaaagcaggagggccaccag
ctgcaccaggaggcctgggaacgccatcagagccggaaagaactccgcagcaagaaccag
aacgcccacgagagccgacctgaagaggccttcttcagccgcctggactccagccttaag
aagaacacggccttcgtgaagaagctgcgcacgctgaccgagcagcagcgggatgtgctc
tccaacgacttctcctcactcaacctcagcaagtacatcggcgaggccgtcagctcgctg
gtggaggccaagctgaagatctcggacgtgggctgtgccgtccacctgtgctccctcttc
caccagcgctacacagagtttgctcccttgctgctgcaggcgtggaagaagcactttgaa
gccaggaaggaggaaaaggcgccaaacgtgagcaagctgcgcacagacctgcggttcatc
gccgagctcaccatcgtcggcctcttcaccgacaaagaaggcctgtcactgatttacgag
cagctgaagaacatcatcggcacggaccgggagacgcacacccacgtgtcggtggtgatc
agcttctgtaagcactgcggagatgacatcgccgggctggtgccccgaaaggtgaagctg
gccgcagagaagttctgcttgactttccctccaagcgagatcatcagtacagagaagcag
cagcccttccagaacctcctgcgggagtacttcacctccctgaccaagcatctgaagaag
gaccaccgggagctgcagaacattgagaggcagaaccgtcgcatcctgcactccaaaggg
gagctgagcgaggacaggcacaagcagtacgaggagttcgctacatcctaccaaaagctg
ctggccaacactcactccctggcagacctgctggacgaaaacatgcctgagctgccgcag
gacaagactgtccaggaagagcacggccccggcatcgacatcttcaccccgggaaaaccc
ggggagtacgaactggagggggggatctgggaggacgaagacgctcgtaacttctacgaa
aacctgatcgacctgaaggctttcgttcctgcgatcctcttcaaggacaacgagaagagc
ggcctgagcaaagacaaagaggacagcaaagatggcagagaaggaaaagatgcaagcacc
acagaagatctggagctggagttggaggctctggacatcgcagatgagcctcttgaactg
gagggaggagacgaggtggagagcgaggagctggccaagaagctgctggatgagcaagag
caagaagacgaggaggcaaacacaggatcgcacctgaagctgattgtggacgccttcatc
cagcagctgcccaactgtgtcaacagggacctgatagacaaggctgcaatggacttctgc
atgaacatgaacaccaaatccaacaggaggaagctggtccgagccctgttcactgtcccc
aggcagaggttggatctcctgcctttctactctcgcctggtggcaacgctgcatccctgc
atgtctgacgtggccgaggatctctgctccatgctgaagggagacttccgcttccatatc
cgtaagaaggaccagatcaacatcgagacaaagaacaagacagtccgattcatcggggag
ctgtccaagttcaagatgttctcaaagacggacactcttcactgcctgaagatgctgctg
tctgatttcacccatcaccacatcgagatggcctgcaccctgctggagacctgcggccgc
ttcctgttcaggtcgccagactctcacctgcggaccagcgtcctgttggaacaaatgatg
cgtaagaagcaggcgcagcatctggacgcccgctacgtcaccatggtggagaacgcctac
tactactgcaacccgccgcccatagagaaggccgtgaagaagaagaggccgccgctgcag
gagtacatccgtaagctgctctacaaggacctgtccaaggtgaccacggagaaggtgctg
aggcagatgcgcaagctgccgtggcaggaccccgaagtgaagggctacctgatctgctgc
atgatcaacatctggaacgtcaagtacaacagcatccactgcgtggccaacctgctggcc
ggcctggtggcctaccaggaggacgtgggcatccacgtggtggacggagtgctggaggac
atccggctgggcatggaggtcaaccagccaaagttcaaccagcggcggatcagcagcgcc
aagttcctgggcgagctctacaactaccgcatggtggaatcggcggtcgtcttccgcacg
ctcttctccttcatctccttcggggtgaaccaggacggcagccccagccctctggacccc
cccgagcacctcttccgcatccgcctggtctgcaccctgctggacacctgcggtcagtac
ttcgaccgcggctccagcaagaagaagctggactgcttcctgatctacttccagaggtac
atttggtggaaaaagagtgtggacgtttggacgaaggaccacccgttccccatcgacatc
gactacatgatcagcgacaccctggagctgctcagacccaagatgaggctgagctgctcc
ctggacgaggccaccaagcaggtcgccgacctggagagagaagtgctcgtcaaactgggc
atggccatggagaaggacggccgctccagcgccatgagcgaaggggagccgctggacgaa
gaggacgacgacgacgatgatgaagaaggtgcagccgacaccgaggagcaatctggaaac
gagagcgagatgaacgaacaggaagaggatgaaggatctgagaatgaggaggaagagcgt
gatgaagaggaagaagagaacacggattatctgaccgactccaacaaagagaatgagacg
gatgaggagaacaatgaggtgaccatccgtgggggcgggctgaaacatgtggcctgcgct
gaggatgaagacttcattcaggctctggataagatgatgctggaaaacctgcagcagcgc
agcggcgaggcggtgaaggtgcaccagctggacgtggccatccctctgcagctgaagagt
cagctgaagaagggcggctctgggcagcagtgcatgggagagggagaggcggacatctcc
gaaaccatgcagttcgtcatgctgacccggaaaggaaacaaacagcagtataagatcctg
aatgtcccgctgtcgtcccacctggcggcgaaccacttcaaccagcagcaggcggagcag
gaggagcggatgaggatgaagaagctcaccctggacatcaacgagaggcaggagcaggag
gactatcaggagatgatgcaatctttcgcccagcgtccggcgccagccaacaccaaccga
gagcgacggccccgctaccagcacccgaaaggcgctcccaacgccgacctcatcttcaaa
actggaggaaggagacgctga
DBGET
integrated database retrieval system
