Cyprinodon variegatus (sheepshead minnow): 107090562
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Entry
107090562 CDS
T06110
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
107090562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvg04121
]
107090562
Ubiquitin system [BR:
cvg04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
107090562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
CH
PDZ_6
PDZ
LIM
PDZ_2
Motif
Other DBs
NCBI-GeneID:
107090562
NCBI-ProteinID:
XP_015239503
LinkDB
All DBs
Position
Unknown
AA seq
1286 aa
AA seq
DB search
MEWRQQSSVSCEDAFTEAQRWIQEVTGKSFGCSDFRVALENGVLLCDLINQLKPGIIRRV
NRLSTPIAGLDNVTVFLKACGKLGLNESQLFHPGDLQDLSTRVTLRRDESQRRLKNVLIT
IYWLGRKAQLDTLYSGPQLNFKAFEGLLGLALSKALEEGTNAFVKDGSYKECLHSEGEES
LQTRQTYNRGNSLVGFDCVDPKAVCLHEEGFESDAEAEQVYKMDSTKVSAQQSKGHVQPP
LGRKQGRSEKAADHTSQLPRACQIQSETPVQVNPGWIWSKSLSDIPMVYPVRKVSNGNAI
SDKGQDTRDWNQEIERNCSAAARDSEVQWQDDLTRWKNRRRSTKSELYRRSFEREHIFKE
MTNGAVRNYEGNEAPGGPIKRDQSPWRHSSLPRPYSVSPSKPLSFALRPHTEAISTSSYA
TDTPFRPQSYPQECHQGASSKSGGSIIGGEPALASLASDGRAGVTTPSLHQAFTSQTQVK
ALGSQSTFHSSSGQVQPQRCLPNQISSSFNIIQPELFDSEESATTCNSASYMHSFSTDLK
GKTFSPNVVSHSGVDVTDDLIEKSDGIPKSYPNSAEDGRVCRQESARLSKYLSRNATWSS
SASLPRGYRRSEGSTRLSTPITARPFEAKPSGISTLPKQHNVDSLSLIVNTGDSHSSTKP
ALKRQTAAAHLRGQYQASVRQKKANQVRQNAAGQRKEVNDQTFPQTYTKSSSNNKSSVLA
SNASTVLKVDHSDMRVSLTLKPNSVPDFGFQTHWDCTGVRIKSIQPGSPAEHCQLCVDDE
IVAVDGVAVAHMTYSQWKDKMASSLDSGSLTMDIRRHGIKDWSTNKGSNDNQPGHSMLTL
NLTSTAPILIGRSDHHANSAASAEMADTQESQLNGQTDNVTQEKVIGGPFSVNTTKARCK
ENVSITRENQKRRKEFFTQKGGSESAISDIQVPSLNPSSSSWAWDCEEDRRRQEKWQEEQ
ERLLQEQYQRDQEKLEAEWQRAQQDAMESETLRENAVEMGSGPELFASSQLYANGLTKGK
KEEKVNLDGEYQKEAGLMHPSIAHRVQSNRITEKDWAEGSSGFAQLSHAHRAMSMSTPVL
SGPCRQSRGLGDPRKRRGLTMSKAERERQQILEEMKKRTQLLTDNSWIRQRNGGFHKDDD
VGTAMKRYESLDNLDIFHQSPDCAATFTYPRPSSAAGGYSAQTRTASSRYSTGSLSFQRH
VNMESSHQPRMVSGRRTCCVCERVLGSGAAMIIKTLSLCFHLTCFQCVGCNRHLGGTETG
VQVRIHNRRPYCDYCYFQLKYSALRM
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcggcagcagagcagcgtcagctgcgaggacgccttcacagaggctcagcgc
tggattcaggaggtaactggaaaatcctttggctgcagtgatttccgtgttgccttagaa
aatggtgtgttgctttgcgacttaatcaaccagttaaaacctggaatcatcagacgagta
aacaggctatccactcccattgctggactggataatgtgacagttttccttaaagcctgt
ggaaagctcggattaaacgagtcgcagttgtttcatcctggtgatcttcaggatctgtcc
actcgggtgacactcaggcgtgatgaaagccagaggagactcaagaatgttcttattaca
atctattggctgggtcgcaaggctcaacttgacacactctacagtggtcctcagcttaat
ttcaaggcttttgaggggcttttaggtttggccttgtccaaggctcttgaagagggcact
aatgcatttgtaaaagatgggagttacaaggagtgcttgcactctgagggagaggaaagt
ctgcaaacaagacagacttataatagaggaaactctttagttggctttgactgtgtggac
cccaaagctgtctgtctacatgaagaaggttttgaaagtgacgcagaagcagagcaggtg
tacaagatggacagtacgaaggtctcagcccagcagagcaaaggacatgtccaaccaccg
cttggtagaaaacagggacggtcggaaaaggcagcggatcatacgagccaacttccaaga
gcatgtcagattcagtctgagacaccagttcaggtcaaccctggctggatttggagcaaa
tccctcagtgacatccctatggtgtaccccgtgcgtaaagtttcaaatggaaatgccatt
tctgataaaggccaagacaccagggactggaatcaagaaattgaaagaaactgtagtgct
gctgccagggacagtgaagttcagtggcaggatgatttgacgaggtggaagaatcgacgc
aggagcaccaagtctgaactgtacaggaggtcatttgaaagggagcatatctttaaagag
atgaccaatggggctgtgagaaattatgagggtaatgaagcaccaggagggcctataaag
agagatcagtcaccatggcggcacagctccttaccacgtccttattccgtttctccatcc
aaacctctgagttttgctctcaggccacatacagaagcaatttccaccagcagctatgcc
actgacacccctttcagaccccaaagctatccacaggagtgtcaccagggagccagttct
aaatctggtgggtccatcatcggaggggagcctgcccttgcctccttagcttcagatgga
agagctggagttactacaccttctctacaccaagctttcacctctcagacccaagtgaaa
gccctaggcagccagtctacctttcattccagttctggacaggtgcaaccacaaagatgt
ttgccaaaccagatctcctcttcttttaacatcatacagcctgaactgtttgactctgaa
gaatccgctacaacctgcaattctgcttcatacatgcattccttcagcactgatctgaaa
gggaaaactttttctccaaatgtagttagtcattcaggagttgatgttactgatgatttg
atcgagaaatctgatggaattccaaaatcatatccaaattcagctgaagatggaagggtc
tgtagacaggagtctgcaaggctttccaagtatttgtccagaaatgcaacatggtccagc
tctgccagtcttcctcgtgggtaccgtcggtctgagggttccactcgtctctccactccg
atcacagccagacccttcgaggcaaagccatccggaatatccacactaccaaaacaacac
aatgttgacagtctgagtttaattgtaaacactggggattcccattcctcaaccaaacca
gctctgaaaaggcagactgcagcagcgcatctgcggggtcagtatcaggcctcggttagg
cagaagaaggctaaccaggtgaggcagaatgccgcaggacagcgaaaggaagtgaatgat
caaaccttccctcagacttatacaaaatcatcttccaacaacaaaagctctgttcttgca
tctaatgcaagtacagtcttaaaggttgatcacagtgacatgagagtgagcctgactctg
aaaccaaacagcgtcccagactttggcttccaaactcactgggactgcacaggggtgaga
ataaaaagcattcaaccaggcagtccagcagagcactgccagctctgtgtggatgatgag
attgtggcagttgatggagttgctgttgcacatatgacctacagtcagtggaaggataaa
atggcatcctccctggattctggcagtttaacaatggacattcggcgtcatggcatcaag
gattggagcacgaataaaggaagtaatgacaaccagccaggacacagcatgttgaccctt
aatctgacttctacggcacccattttaataggccgctccgatcaccatgccaacagtgca
gcctctgcagaaatggcagacacacaagaatctcaacttaatgggcagacagacaatgta
acgcaagaaaaagtcatcggtgggcccttctctgttaacacaaccaaggctagatgtaaa
gaaaatgttagtataactagagaaaatcaaaaaaggaggaaagagtttttcacacagaaa
ggaggctcggaatcagcaatatctgatattcaggtgccttccctcaacccatcctcatcc
agctgggcttgggactgtgaggaggatcgtaggcggcaggagaagtggcaggaagagcaa
gagcgccttctgcaggagcagtaccagcgagatcaagagaagttggaggcagagtggcaa
agggcacaacaggatgcaatggaaagcgagacgctgagggagaatgctgttgagatgggc
agtggtcctgagctgtttgccagttcccagctttatgcaaacggactgacaaagggaaaa
aaagaagagaaagtgaatcttgatggagaatatcagaaagaagctggactgatgcatccc
agtattgcccacagagtgcagagtaacaggattactgagaaagactgggctgagggttcc
agtggtttcgctcagctgtcccatgctcacagggcaatgtccatgtcgactccggtttta
tctggaccctgcagacaatcaagaggtttaggtgatccaaggaaaagaagagggttaacc
atgtcaaaagctgagagggagagacagcagattttggaggagatgaagaagaggactcag
cttctgaccgacaacagctggatacgccaacgcaacggtggatttcataaagatgatgat
gttggcaccgccatgaagagatatgagtctctggacaacctggatattttccatcaatcc
ccagactgtgctgcaacatttacttaccctcgccccagttcagctgctggaggttacagt
gctcagactaggactgcctcctcacgctacagcactggctcgttgtctttccagagacat
gtgaacatggagtcctctcatcaacccaggatggtcagtggcaggaggacttgctgtgtg
tgtgagcgtgtcctgggtagtggggctgcgatgatcataaagacccttagtctctgtttc
cacctgacctgtttccagtgtgtgggctgcaatcgacacctcggaggaacagagactgga
gtccaggttcgcatccataacaggaggccctactgtgattactgctatttccaactcaag
tactctgccctccgcatgtga
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