Cyprinodon variegatus (sheepshead minnow): 107090887
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Entry
107090887 CDS
T06110
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107090887
Transcription factors [BR:
cvg03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
107090887
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Activator_LAG-3
MPS2
DUF1068
Motif
Other DBs
NCBI-GeneID:
107090887
NCBI-ProteinID:
XP_015239983
Ensembl:
ENSCVAG00000014781
UniProt:
A0A3Q2E6N9
LinkDB
All DBs
Position
Unknown
AA seq
777 aa
AA seq
DB search
MMSSMRATPPFHPSSEEADLMGQDNAAWAGDEREGPTVMASPPLDDQPHPEDVQLAGKKA
GDVEWETSAPPTGTDNEGSKGCSGYAYRTNSSSPTKPEECSRDRGESVIGLAFGTPERRK
GSLADVVDTLKQKKLVELTKSEQDEPSCVVRLLSKDWKEHVEGLNANELLGDVKGTPESL
EEKERQLSTMIGQLISLREQLLAAHDEQKKMAASQMEKQRQQMELARQQQEQIARQQQQL
LQQQHKINILQQQIQVQGHMPPLMIPLFPHDQRSLAAAAAAQQGFLFPPNMYNKPGENYP
MQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQISPGAKMAPLQQAPNSSGPLSPPNLKS
EKQVSSPVTQIKEEGSTQPLNLSARPKTADPYRSPSSPTQSLLPGNKSSPSNMGKGRIPS
PIPIPSMGRNTSLDILSSLNSTALFGDQDAVMKAIQEARSMREQIQREQLHHQQQQPGHQ
SLEAKLSALSSMNLNNSNKERLHYETLSQHLGKLGEDAGKMVHRVIDLTRPEDLDGNTIT
EARVFREARGRNSSEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKAMT
NQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQLMRSRRQEMRQ
FFVGPQPQISLGNSAGGVGVYPGAITMATTATPSPHLTSDCSSTSGSPEPNIPVIQSTYG
VKSEPGGGSNGAGVGAMDLPGDPANGDDDMDMYEDFEDEPKSDYSSEHETREVVSAN
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgcgagcaacgcctccttttcacccgtcgtctgaggaggcggatctg
atgggtcaggacaacgcggcctgggccggagacgagcgagaaggtccgacggtgatggca
tcgccccctttggacgatcaaccccacccggaggacgtccagctcgccgggaagaaagca
ggagacgttgagtgggaaacatccgctccccccactgggacggacaatgaaggcagcaaa
ggctgctctggctacgcttaccggactaactcctcctctcctaccaagccagaggagtgc
tccagagatcgaggagagtctgtgatcggcctggcctttgggactccggagcggcgtaaa
ggaagtctggctgatgtggtggatacactgaaacagaagaagcttgtggagctgaccaag
tccgaacaagatgaaccctcttgcgtggtgaggctgctttccaaagactggaaggagcac
gttgaaggccttaacgccaacgaactactgggggacgtgaaaggtacaccggagtcactt
gaggaaaaggagcggcaactttcaaccatgattggtcagctgatcagtctgagggagcag
cttctggctgcccacgacgagcaaaaaaaaatggcggcatcacaaatggagaagcagaga
caacagatggagttggcaaggcagcagcaggaacagattgccagacagcagcagcagctt
ttgcagcagcagcacaagatcaacattctccagcaacagattcaggtccagggtcacatg
cctcctctgatgatccctctgttccctcacgaccagcgctctctggctgctgccgccgct
gcacagcaaggcttcctcttcccacccaacatgtacaacaagccaggtgagaattaccca
atgcagttcattccatcaacaatggcagccgccgcagcatctggactcagcccgctacaa
ctgcagcagctgtatgccgcacagctggcaagcatgcagatctcaccaggagccaagatg
gctcccctccaacaagctcctaactcctccggtcctctttcaccacccaacctcaagagt
gagaaacaagtatccagccccgtcactcagattaaggaagagggatccacacagccactc
aacctctcagccagacctaagacagccgatccttatcgctctccatcatcaccaacacag
agcctgctacctggaaacaagagcagcccgagcaacatgggcaagggtcgcatccccagc
cccatccccatcccaagcatgggcagaaacacctctctggacatcctgtccagccttaac
tccacagcattgtttggggaccaagacgcggtgatgaaagccatccaggaggccaggagc
atgagggagcagatccagagggaacagctccaccatcagcagcagcagccgggccaccag
agtctggaggccaaactgtccgcactcagcagcatgaacctaaacaacagcaacaaggag
aggctgcattatgagactctgagccagcacctggggaagctgggagaggatgcagggaag
atggtccatcgagtcattgacctgactagaccagaggatctggatgggaatactatcaca
gaggcgcgagtgttcagagaggcacgcggcaggaacagcagcgagccccacatcaagagg
cccatgaacgccttcatggtttgggccaaagacgagaggaggaagattctgcagaccttc
cctgacatgcacaactccaacatcagcaagatcctgggttctcgctggaaagccatgacc
aaccaggagaagcagccgtactatgaggagcaggcccgcctaagcaaaatccacttggag
aaatatcccaactacaagtacaagccacggcccaagaggacctgcatcatcgacggcaag
aagctgcgcatcggggagtacaagcagctgatgcgctcgcggcgtcaggagatgaggcag
tttttcgtggggcctcaaccccagatttctctcggcaacagtgcaggaggtgtaggagtt
tacccaggcgcaataaccatggcaacaacagcaacaccctcaccacatctgacctcagac
tgctcgagcacctcgggcagccctgaacccaacatcccggtcatccagagcacatacggg
gtgaagtcagagcccggcgggggcagcaacggagcaggggtcggcgctatggatctacct
ggagaccccgcaaacggagacgatgacatggacatgtacgaggactttgaagacgagccc
aaatcggactatagcagcgagcacgaaacgagggaggtggttagcgccaactga
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