Cyprinodon variegatus (sheepshead minnow): 107090937
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Entry
107090937 CDS
T06110
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04517
IgSF CAM signaling
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
107090937
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107090937
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cvg04812
]
107090937
Cytoskeleton proteins [BR:
cvg04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
107090937
Intermediate filaments
Intermediate filament-binding proteins
107090937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
PH_11
DUF7854
Motif
Other DBs
NCBI-GeneID:
107090937
NCBI-ProteinID:
XP_015240078
LinkDB
All DBs
Position
Unknown
AA seq
2366 aa
AA seq
DB search
MELQSPTAALPGSLSPLSPVSDYAGPLSPSGIPGPSHPAGPGRAPSPGLSGQAAFNYNQL
EGRFKQLQDEREAVQKKTFTKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGERLP
KPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQVRG
GLDHGGGTSALRGNEESGTETWRLWCFMTSSWYPNVNIHNFTTSWRDGMAFNALIHKHRP
DLIDFDKLKKSNAHYNLQNAFNQAEQHLGLTKLLDPEDISVEHPDEKSIITYVVTYYHYF
SKMKALKVEGKRIGKVLDHALETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGV
QQQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVFTPREGKLISDINKAWE
RLEKAEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGYDLQAV
EAATKKHEAIETDIAAYEERVQAVVAVAKELEAESYHDIKRITARKDNVIRLWEYLLELL
RARRHRLEQNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADI
AIQADRVRNVNSNAQKFATDTEGYKPCDPQVIRDRVAHMEFCYQELSQLAAERRARLEES
RRLWKFFWEMAEEEGWIREKEQILSSEDYGKDLTGTVRLLSQHKAFEDEMSGRAAHLQQT
IKQGKDLVADNHFGAEKIKERIRDIEEQWAALERLSAVRKARLQAACNHHQFQADADDID
TWMLDVLRIVSSVDVGHDEFSAQALVKKHKDVAEEISSYRPAIDALHEQAQTLPPERANS
EEVQNRLAGIEERYKEVAELTRLRKQALQDALALYKLLSEASACELWIDEKEQWLNSMEI
PEKLEDLEVIQHRFENLEPEMNSQASRVAVVNQVARQLIHSGHPSEREIKTQQDKLNTRW
SQFRDLVDQKKEILNSTLGVQNYHLECNETKSWIKEKTKVIESTQELGNDLGGVMALQRK
LTGMERDLVAIEDKLKDLEKEAEGLSSEHPEQYAAIKGQLAEITSVWNEMKGTLKNREES
LGEASKLQQFLRDLDDFQSWLSRTQTAIASEDMPNTLAEAEKLLSQHENIKNEIRNYEED
YQKMRDMGEMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSNAYQLFLRD
TKQAEAFLNNQEYVLAHTEMPTTLEGAEAAIKKQEDFMTTMDASEEKISGVVDTGRRLVT
DGNINAERIQEKVDSIDQRHKKNRQAAKDLLMKLKDNRDLQKFLQDCQELSLWINEKMLT
AQDLTYDEARNLHSKWLKHQAFMAELQSNKEWLDKIEKDGQALAAEKPETEAMVKEKLAS
LKTMWEVLESTTQTKAKCLFDANKAELFTQSCADLDKWLTGLDGQLQSDDFGKDLTSVNI
MLKKQQMLESQVEVRQKEVEELQRQSQALSQEGKGSDEVEGRRITVEKKFQALLAPLKMR
RDNLMASREIHQFNRDVEDEILWVEERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGH
QPRFDDIFERSQHVLRADSPTAEPIRQRLTELQALWDQIKKETEKRHSRLSEAHEAQQYY
FDAAEAEAWMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYADTVHQLSSTSRGL
VAAGHPDSERIGMRQSKVDKLYAGLKDLAEERRGKLDERFRLFQLNREVDDLEQWIAERE
VVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDGVNKQADELINAGHSDSATIAE
WKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEILNRILDKHKKLPEELGRDQNT
VETLQRMHTTFEHDIQALGTQVRQLQEDAVRLQSAYAGDKADDIQKREGEVLEAWKNLLE
AAEGRRVKLVDTADKFRFFSMVRDLMLWMEDVIRLIEAQEKPRPRKSSSVLILIRFVPQI
KEKLLQLTDKRKEMIDKWEDRWEWLRLVLEVHQFSRDAGVAEAWLLGQEPYLSSREMGQS
VDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLEVRRMQEEEEKKRQPAEAQAAEA
AAQSRDGEPASQNGLPSEQEPPRVSYRSPAYQTYSDILQSRRAAAVAAAAAAAARRFPQT
TTAAVNQRLFIALQELNQPTHRVFWCRRSSGFVEVQKADAALSKSSQDWSRSSESSQDPS
GLCCRSWHNVYCVINQQEMGFYKDQKSASQGIPYHSEIPISLKEALCEVAVDYKKKKHVF
KLKISDGNEYLFQAKDDEEMNSWISAISAAVAGVKSEVTPSGHSTPAPAARAQTLPATVA
ATAAESSPGKREKDKEKRFSLFSKKK
NT seq
7101 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcagagccccaccgccgccctccccggctccctgtcacccctctcccccgta
tcggactatgcggggcctctgtccccgtccgggatccccgggccgtcccatccggccggt
ccgggtcgggctcccagtcccggcctctcaggacaggcagcctttaactacaaccagctg
gagggacgcttcaaacagctccaagatgagcgtgaggcggtgcagaagaagaccttcacc
aagtgggtgaactcccacctgtccagagtctcctgccggatcacagacctgtacatggac
ctgagggacggacggatgctcatcaagctgctggaggtcctgtcaggagagaggctgccc
aaacccacaaagggccgcatgaggatccactgcctggaaaatgtggacaaagctctgcag
ttcctgaaggagcagcgggtccacctggagaacatgggctcccacgacatcgtggatgga
aaccaccgcctgacgctgggcctcatctggaccatcatcctgcgcttccaggtaagaggc
ggactggaccacggaggcgggacttccgctttaagggggaatgaagagtcaggaactgaa
acgtggcgtttatggtgctttatgacatcatcatggtatcccaacgtcaacatccacaac
ttcaccaccagctggagggacgggatggccttcaacgccctgatccacaagcacagaccc
gacttgatcgactttgataagctgaagaaatcaaacgctcactacaatctacagaatgcc
ttcaatcaggccgagcagcacctgggcctcaccaagctgctggaccctgaagacatcagc
gtggagcatcctgatgagaagtctatcatcacctacgtcgtcacctactaccactacttc
tccaagatgaaggcgctgaaggtggaggggaagaggatcgggaaggttctggatcacgcc
ctggagacggagaaaatgatcgagaagtacgagtctctggcgtcggacctgctggagtgg
atcgaacagaccatcatcatcctcaacaacaggaagtttgccaactctctggtgggcgtc
cagcagcagctgcaggccttcaacacgtaccgcaccgtggagaaaccaccaaagtttaca
gagaaggggaacctggaggttctgctcttcaccatccagagtaagatgagagccaacaac
cagaaggtcttcacccccagagagggaaaactcatctctgacatcaacaaggcgtgggag
cgtctggagaaggcggagcacgagcgggagctggctctgaggacggagctgattcgtcag
gagaagctggagcagctggcccgccgcttcgaccgtaaggcggccatgagggagacgtgg
ctgagtgagaaccagaggctggtctctcaggataatttcggatatgacctccaggccgtt
gaagccgccacaaagaaacacgaagccatagaaacggacatcgcggcgtacgaggagcga
gttcaggcggtggttgccgtggcgaaggagctggaggcggagagttaccatgacatcaag
cgcatcacagccaggaaggacaacgtgatccgtctgtgggagtacctgctggagctgctg
agggcccggcgccacaggctggagcagaacctgggcctgcagagagtcttccaggagatg
ctctacatcatggactggatggacgagatgaagatgctgctgctctctcaggattacggc
aaacacctgctgggtgtggaggacctgctgcagaaacacgctctggtggaagccgacatc
gccattcaggccgaccgagtccgaaacgtcaacagtaacgctcagaagtttgccaccgac
acagaaggttataagccctgtgacccgcaggtcatcagggaccgcgttgcccacatggag
ttctgctaccaggagctgagccagctggcagctgaacgccgagctcgcctcgaggaatcc
cgccgactctggaagttcttctgggagatggcggaagaggagggatggatcagggagaag
gaacagatcctgtcctctgaggattatgggaaggacctgacaggcacggtgcgcctgctc
agtcagcacaaagcctttgaggacgagatgagcgggcgagccgcccacctgcagcagacc
atcaaacagggcaaggacctggtggccgacaaccacttcggggccgagaagatcaaggag
cggatccgggacatcgaggagcagtgggcagctctggagcgtctgtctgctgtgagaaaa
gcacgcctgcaggcggcgtgcaaccaccaccagttccaggctgatgcagatgacattgac
acatggatgctggacgttctgcgcatcgtctccagcgtggacgtcggccacgacgagttc
tccgctcaggctctggtgaagaaacacaaagacgtcgcagaggagatcagcagctatcgg
cccgccatcgacgctctgcatgagcaggcccagacgctgccgccggagagggccaactcc
gaggaggtccagaaccggctggcgggcattgaagagcgctacaaggaggtggcagaactg
acccggctcaggaagcaggccctgcaggatgccctggcgctctacaagctgctgagtgaa
gccagcgcctgcgagctttggatcgacgagaaggagcaatggctcaacagcatggagatc
ccagagaaactggaggacctggaggtcatccagcaccggtttgagaatctggagccggag
atgaacagccaggcctcccgggtcgccgtggtgaaccaggtagccaggcagctgatccac
agcggacatcccagtgagagggagatcaagacccagcaggacaaactcaacaccaggtgg
agtcagttcagagacctggtggaccagaagaaggagatcctgaactcaactctgggagtc
caaaactaccacctggagtgtaatgagaccaagtcctggatcaaagagaagaccaaggtg
attgagtccacgcaggagctgggcaacgatctgggcggagtcatggctctgcagaggaag
ctaacagggatggagcgggacctggttgccatcgaggacaaactgaaagacttggagaaa
gaggcggagggtttgtcttccgaacacccggagcagtacgcagcgatcaaaggacagctg
gctgagatcaccagcgtctggaatgagatgaaggggacgttgaaaaaccgtgaggagtct
ctgggcgaggccagcaagctgcagcagttcctgcgagacttggacgacttccagtcatgg
ttgtcccggacgcagacggccatcgcctcggaggacatgccgaacactctggctgaggcc
gagaagctgctctcccagcacgaaaacatcaagaacgagatccgcaactacgaggaggac
taccagaagatgcgggacatgggcgagatggtgacgcaaggccagacggacgctcagtac
atgttcctcaggcagcgtcttcaggcgctggacaccggttggaacgagctgcacaagatg
tgggagaaccgacagaacctgctgtcccagtccaacgcctaccagctgttcctgagggac
accaagcaggccgaggccttcctcaacaaccaggaatatgttctggctcacaccgagatg
cccaccaccctggagggggccgaggccgccatcaagaagcaggaggacttcatgaccacc
atggatgccagtgaggaaaagatcagcggtgttgttgacacaggacgccgcctggttacc
gacggcaacatcaatgccgagcgtatacaggagaaggtggactccatcgatcagagacac
aagaaaaaccgacaggcagcaaaagatctgctgatgaagctgaaggacaacagagacctg
cagaagttcctgcaggactgccaagagctgtccctgtggatcaacgagaaaatgctgacc
gcccaggacctgacgtacgacgaggccaggaacctccacagcaagtggctgaaacatcaa
gccttcatggcagagctgcagtccaacaaggagtggctggataagattgaaaaggacggc
caggcgctggcagcagagaagccggagacggaggccatggtgaaggagaagctggcgtcc
ctgaagaccatgtgggaggtcctggagtccaccacccagaccaaggccaagtgtctgttt
gacgccaacaaggccgagctgttcacgcagagctgcgccgacctcgacaagtggctgacc
ggcctggacggccagctccagtccgacgactttggcaaagacctcacctccgttaacatc
atgctgaagaagcagcagatgctggagagccaggtggaggtgcgtcagaaggaggtggag
gagctgcagagacagtctcaggccctcagccaggaggggaaaggctccgacgaggtggaa
gggaggaggatcaccgtggagaagaagttccaggcgctgctggcgcctctgaagatgaga
cgcgacaacctgatggcgtcccgcgagatccaccagttcaaccgagacgtggaggatgag
atcctctgggtggaggagaggatgcctctggccacatctactgaccacggacacaacctg
cagacggtgcagctgctcatcaagaagaaccagacgctgcagaaggagatccagggacat
cagcctcgatttgacgacatctttgagcgcagccagcacgttctgagggccgacagcccc
acggcggaacccatccgccagaggctgaccgagctgcaggcgctgtgggatcagatcaag
aaggagacggagaagcggcattcccggctcagcgaggcccacgaggcccagcagtactac
ttcgacgccgccgaggccgaggcctggatgagcgagcaggagctgtacatgatgtcagag
gagaaggccaaggacgagcagagctccgtggccatgctgaagaagcaccagatcctggag
caggccgtggaggattacgccgacaccgtccaccagctgtccagcaccagccggggcctg
gtggctgcaggccaccctgacagcgagcgcatcggcatgcgtcagtctaaggtggataag
ctgtacgccggcctgaaggacctggccgaagaacgacgcgggaagctggacgagcgtttc
cgactcttccagctcaacagggaggtggacgacttggagcagtggatcgcagagagggag
gtggtggccgggtcccatgagctgggacaggactacgaacacgtcacgatgctgcaggag
cgattccgagaattcgcccgtgacaccgggaacatcggccaggagcgcgtggacggcgtg
aacaagcaggcggacgagctgatcaacgcgggccacagcgactccgccaccatcgccgag
tggaaggacggcctgaacgaggcctgggccgacctgctggagctcatcgacacgcgcacg
cagatcctcgccgcctcctacgagctccacaagttctaccacgacgccaaggagatcctg
aaccgcatcctggacaaacacaagaagctcccggaggagctgggccgggaccagaacacg
gtggagaccctgcagaggatgcacaccaccttcgaacacgacattcaggctctggggacg
caggtccggcagcttcaggaagacgccgtccgtctgcagtcggcgtacgccggagacaaa
gcggacgacatccagaagagagaaggagaggtcctggaggcctggaagaacctgctggag
gcggcggagggccggcgggtcaagctggtggacacggccgacaagttccgcttcttcagc
atggtgcgggacctgatgctgtggatggaggacgtgatccggctgatcgaggctcaggag
aagccaaggcccaggaaaagctcctcggttctgatcttgatccgttttgtgccgcagatt
aaagagaagttgcttcagctgacagacaagaggaaagagatgatcgataagtgggaggac
cgatgggagtggctcagactggtgctggaggtgcaccagttctcccgggacgcgggcgtg
gccgaggcctggctgctggggcaggagccctacctgtccagcagggagatggggcagagc
gtggacgaggtggagaagctcatcaaacgccacgaagccttcgagaagtccgccgccacc
tgggaggagcgcttctcggctctggagaggctgacgacgatggagctactggaagtgaga
agaatgcaggaggaagaggagaagaagaggcaaccggccgaggctcaggccgccgaggct
gcagctcagagcagagacggtgagccggcgtcccagaacgggctgccgtccgagcaggag
cccccccgggttagttaccgctcacccgcctaccagacatacagcgacatcctgcagagc
cgcagggccgccgccgtggctgcagccgctgcggccgcagcccgaaggttcccacagaca
accacggctgctgtaaatcagcggctcttcatcgcgctgcaggagctcaaccagccgacc
catcgggtgttttggtgcaggcgaagctcagggtttgttgaggtccagaaggccgacgct
gctctgagtaaaagctcccaggattggtccagatcatctgaaagctcccaggatccctcc
ggcctctgctgcaggtcctggcacaacgtctactgtgtgatcaaccagcaggagatgggc
ttctacaaggaccagaagagcgccagtcagggcatcccctaccacagcgagattcccatc
agcctgaaggaggcgctgtgtgaggtcgctgtggattacaagaagaagaaacacgtcttt
aagctaaagatctctgatgggaacgagtatctcttccaagccaaagacgacgaggagatg
aactcctggatctcagccatctctgccgccgtggcgggggtcaaatcggaggtgacgccc
agcggccacagcacgccggcccccgcggctcgcgctcagacgctgccggcgacggtggcg
gcgacggcggcggagtcgagtcctggcaaacgggagaaagacaaggagaaacgcttcagc
ctcttcagcaagaagaaatag
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integrated database retrieval system
