Cyprinodon variegatus (sheepshead minnow): 107091231
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Entry
107091231 CDS
T06110
Symbol
stab1
Name
(RefSeq) stabilin-1
KO
K19020
stabilin-1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107091231 (stab1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107091231 (stab1)
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Hyaluronan
Cell surface receptors
107091231 (stab1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fasciclin
EGF_3
EGF_STAB1-2
Xlink
EGF_TEN
cEGF
FXa_inhibition
EGF
Motif
Other DBs
NCBI-GeneID:
107091231
NCBI-ProteinID:
XP_015240519
LinkDB
All DBs
Position
Unknown
AA seq
2464 aa
AA seq
DB search
MLLFLLVSLDFCIQTSGQQQTAPPGRCDVPQRLDVYTDCTSCAASITASCPRGFTKLGTN
NCSYVVQIGGREMELQGCQHTCVKSFLHPKCCPGHWGPLCLSCPSWSGKICNFNGACMDG
DMGNGTCICDEGFTGFACQECKNPKAFGKKCDKVCDCVNGVCNKGPDGDGECLCQPPYTG
RRCDEVSSGCRSCSSFSYCKGKEETAGCDCLPGYRMMKGNKCLAACSQRDCDVNAECSTK
ATSIRCTCKPDYEGDGKICVPKNPCLENNGGCPINSTVCVFRGPNKSSCECMSGMSPVGG
SPENGCQLVSACSVDTCDTTAVCQTELDGKPRCVCEPEQIGDGQRCYGNLMERLIELDSR
GNQRENLTGAVALFEKGCLMVLSHSGPFTAFFPLLKQPLSGVDEEAVCKNHLILGQHLYK
DLEGKDFNLYGGEKLRVKVNKKFILMNDPTKPYSIIQADLPAANGIIHIIDRPITSSLPG
SSSRDEQFADLTIGEILRKDEKFSRFLSLVDNCGSPPPLRGPGPLTVFIPTNYAVDRARD
GSILYMLNDAKHKLQELLRHHVFTQAALTVDELAALPVIQTMANQFVTISASDSGEILLA
DKKVHVVGTNIMASNGVIHMIDGLLYPPSILPILPHRCDVTESKITVGPCVHCRFLSATQ
CPEGTVEMETHQIGCEYTVPPFSETHHKGCAKYCNATKQVAECCKGFYGPDCKPCIGGFQ
HPCYDKGACFDGIHGNGSCSCHSGFKGLACHICTDPSKHGENCDEECRCLHGVCDNRPGS
GGVCRRGSCVEGYSGDYCEKTATPCNADGLMAHCHIHAYCTHTGLDYSCLCRDGYEGDGH
SCSPINLCLKSNRGGCDANAECVYVGPGNVSCVCAEGWTGDGKVCVEINNCQLEGRGGCS
PNADCNHIGPGQSECVCKTGYMGDGKVCDLINPCQKNNGGCHELAKCELKENAVHTCTCL
DGFFGDGKLCYGTLKDELDMHFQFLGLNKQILRCKEAQEDLSGNLTVLSPSLKAFGNLSM
TDMFFWTSRHRLPHLLRKLAHKIGLGINDLWVLHIGDAAIISHNVPAVNGFIHTINKVLT
PSRSDLPPEPPTVMAFLNASSSFSLFRQYALMYNLSGHLDQRIFTLFLPTDDVIRKHLSK
TNSSVLDSDTFLYHVIPKEVLSLDQLHDGMFKATLLGEDYEVQFHLTADNQTAVNDVHLN
GSIIDTQYGIIHVLPQVLRVRRNRCSRQVKTQIKGRCTDCEGPPLCYYVYKPIKERFPAN
MRSNCFYRKRVGGRRKSVPGCLINCLRVTKEHKCCPGFYGHECFKCPGADGSPCSNHGQC
QDGIQGNGECRCYEGFHGTACEDCEPGRYGVNCTSKCSCNHGKCDDGLAGSGRCLCYKGW
KGASCSIEIKDDACGGVCDDNANCVTGPQGSAAVCVCVAGYDGNGTHCRELDLCSIRNGG
CSEFANCTKVSAGERTCTCKEGYTGDGVVCLEIDGCLVNNGGCHKAAECTRAGPNITACR
CLTGFEGTGRFCHPVNPCKTNNGDCSRYAICRYMGEGQRNCTCRSGYIGDGFDCRGNTYN
EVLRQSENGFFQKMMSKSSSRPLGNGPFTVFVPLEETNNDSIIDEWKERGRLEHMVDYHM
VSCEILTLSDLKTTSSVVSLSGYTLEFSVKEGSVWINNKSMIVKSDYATTNGVIHHIDRL
LTPYNLQDKPQINIKMNFSTAATFYGYGRFYKLIEDAGLLPVLRMSIHQPFTIFWPTDKA
LDSLPAERQRWLSSPDHQDQLAATIKAHIIRNFGKIKVGQAGKSTSYRTMHGSTIKLSCD
KKLVGSILINENEARLVDRYISFMEGAGFGIDQLLEPPGLGAFCDSIQNKTTYGRCGSCL
SPPRCPQLDTGKTMSCMRPRFGYRTSWYDDLNRYGRKRCKRVCQFPAWVPKCCKNHYGSE
CRVCPGGVEDPCSSHGDCQDGVTGSGACKCYKGFKGKSCDLCETGYYGTNCTACSCVKGS
CDDGMDGTGQCVCQPGWEGDRCQNKIGSVPENCRQCHAQARCVFNVGCQCIPGYEGNGTF
CSPVPRESFSAESLNERRCECLPGYVGNGVQCLEKVVPPVDRCLEENGGCDPVATCKDLH
YHANTGGVFHLRSPEGKYMMNFTQATMGCQAEDATLATFQQLGDAQQLGMHLCVAGWIEG
GRVGYPIRFPSVKCGDNHVGLVMYKDPVDQSSKYDAYCYRLRDVSCSCPEGYVGNGDFCN
GVLTSVLATNSNFSIFYKLLVDYGGSSSEGRQLIDILAHRKSELTLFVPHNSGFAPNLTL
SERDLEYHISTNHSRRPFKDLKHQEVLQSRLGFNLTVTYGNNESCKLVNQRLLLDWDIPA
VNGIIHVLEAPLTAPAPLVIHSRSRGHAHSTGVASAILVPLLVCVLAALGYYLFRQKMDA
FRFHYFKNEDEDGAAGGPTKPTLVSIPNPLYSGSRAFAEPFGEMTSAAEPAEPTEPPNIL
DLDQ
NT seq
7395 nt
NT seq
+upstream
nt +downstream
nt
atgttgctctttctcctcgtgtcgctggatttctgcatccaaacatcaggacaacagcag
accgctccaccaggtcgctgtgatgtccctcagaggttagatgtttacaccgactgcacc
tcctgcgccgcctccatcacagccagctgcccccgtggcttcacaaagctgggcaccaac
aactgcagttatgtggtgcagatcggcggcagggagatggagcttcagggatgtcagcac
acgtgtgtgaagagtttcctgcatccaaagtgctgccccggccactggggcccactgtgt
ctgtcgtgtccaagctggtcaggaaagatctgcaactttaacggagcctgtatggacgga
gacatgggcaacggcacctgcatctgtgatgagggattcacagggtttgcttgtcaggag
tgtaaaaatccaaaagcatttgggaaaaagtgtgataaagtgtgtgactgcgtgaacgga
gtgtgtaacaaaggacctgacggtgatggggagtgtctatgtcagccgccgtacactggg
aggcgctgtgacgaagtaagcagcgggtgtcgaagttgcagctccttctcgtactgcaaa
ggaaaagaagaaactgcaggctgtgactgcttgcctggatacaggatgatgaaggggaac
aagtgtttagctgcatgctcccagagagactgtgatgtcaacgccgagtgctccacaaag
gccaccagtatcagatgcacctgcaaaccagactatgagggagacggcaagatctgtgtc
ccgaaaaacccctgcttggagaacaacggtggctgccccatcaactccactgtttgtgtc
ttcagaggaccaaacaagtccagctgcgagtgcatgtctggcatgtcgcctgtagggggc
agccctgagaacggctgccagctcgtctctgcctgctcagttgatacctgcgatacaaca
gcagtctgccagaccgagctggatggaaagcccaggtgcgtttgcgagccggagcagatt
ggagatgggcagcgttgctacggtaacctgatggagcgcctcatcgagcttgactcaaga
ggaaaccagagagaaaatctgaccggagccgtcgccttgtttgagaaaggctgtttgatg
gttcttagtcactctggacccttcacagctttcttcccgctgttgaaacagcctctgagt
ggtgtcgatgaggaggcagtgtgtaaaaaccacctgatcctgggtcagcacctctacaaa
gatctggagggaaaagactttaacctttacggaggagagaagctccgggtcaaagtcaat
aagaagttcatcctgatgaacgatcccaccaagccatactcgatcatccaggcagacctg
ccagcagccaatggcatcatccacatcatcgaccggccaatcaccagcagccttcccgga
agctcatccagggacgaacagtttgctgacctcacaatcggagagattctgagaaaagat
gagaaatttagtcgcttcctgtccctggttgacaactgtggctcccctcctcctctccgt
ggaccaggacccctcactgtgttcatccccaccaattacgcggtggaccgggcccgagac
ggcagcatcctgtacatgttgaatgatgccaaacataaactacaggagctgctcagacac
catgttttcacccaagctgcgttgactgtcgatgagttggccgcccttcctgttattcaa
acgatggccaatcagtttgtcaccatctctgcttctgatagtggagagatcctgctggcg
gataagaaagtccatgtggtgggcaccaacatcatggcgtccaacggtgtcattcacatg
attgatgggctgctgtacccgccctccatcctgcccatcctgcctcaccgctgcgatgtc
accgagagcaaaatcactgtgggtccttgtgttcactgcagattcctctctgcgactcag
tgtcctgaagggaccgttgaaatggagactcatcagatcggatgtgaatatacggtccct
ccttttagcgaaacgcaccacaaaggctgcgccaaatactgcaacgccaccaagcaggtg
gcggagtgctgcaaaggtttctacggtccggactgtaaaccgtgcatcggaggattccag
catccctgctacgacaaaggagcatgttttgacggtatccatggtaacggctcatgcagc
tgccattccggattcaaaggactcgcctgtcatatctgcacggatccgtccaaacacgga
gaaaactgcgacgaagagtgccgctgcctgcatggcgtgtgcgataaccggcccggcagt
ggcggcgtgtgtcggagaggatcgtgtgtggagggatactctggagattattgtgaaaag
acggccacgccctgcaacgccgacggcctgatggctcactgccacatccacgcatactgt
acccacactggactggattatagctgtttgtgcagggatggatacgagggcgatggccac
tcctgttctcccatcaacctctgcctaaagagcaaccgtggcggctgcgacgccaacgca
gagtgtgtgtacgtgggtccgggtaatgtgtcgtgcgtgtgcgctgagggatggactggg
gacgggaaagtctgcgtggagatcaacaactgtcagctggaaggccgaggaggctgcagc
cccaacgccgactgcaatcacatcggaccaggacagagcgagtgtgtttgtaaaactggt
tatatgggagatggcaaggtgtgcgaccttatcaacccctgtcagaaaaacaatggaggc
tgccatgagttggccaaatgtgagctgaaggaaaatgcagtgcacacctgcacctgtttg
gacggcttctttggggatggaaaactgtgctacggaacattaaaggatgagctggacatg
cacttccagttcctcggcctcaacaaacaaattctgaggtgtaaagaggctcaggaggat
ctgagcgggaacctcaccgtcttgtctccttcattaaaagcctttgggaacctgagcatg
accgacatgtttttctggaccagccggcaccgcctgcctcacttactgcgaaagttggcc
cataaaattggattaggaataaatgatctctgggtgctccacattggagatgccgccatc
atttcccacaacgtgcctgcagtcaacggcttcatccacaccataaacaaggttctgacc
ccgtcccgctcagaccttccacctgaacctcccactgtgatggcattcctgaacgcctca
tccagcttctctctcttcagacagtacgctctgatgtacaacctgtctgggcacctggat
caacggatatttacgctctttctgccaaccgatgacgtgatcaggaaacacctcagcaag
acaaactcgtcagttctggactcggacacgtttctgtaccatgtgattcctaaagaggtg
ctgtcactcgaccaactccatgacggcatgttcaaagccactctgctgggcgaggactac
gaggtccagttccacctaacagcagacaaccagactgctgtaaacgacgttcatcttaac
ggcagcatcattgacacgcagtacggcatcattcacgtcctcccacaggtccttagagtc
agacgcaacaggtgcagcagacaggtcaaaacccagatcaaaggaaggtgtacagactgc
gaaggacctcctctgtgctactacgtgtataagccaatcaaggagcggtttcctgctaac
atgaggtccaactgtttttaccggaagcgggtcgggggccggaggaaatctgtaccaggc
tgcctcatcaattgtcttcgtgtcacgaaggagcacaagtgttgtcctggtttctacggc
cacgagtgcttcaaatgccccggagcagatggcagcccatgctccaatcatgggcaatgc
caggacggtatccaaggcaacggggagtgccgttgctatgagggtttccatggcaccgcc
tgtgaggattgcgagccgggacgctatggagtcaactgcacctccaagtgttcgtgtaac
catggaaagtgtgacgacggtctagcaggaagcggcaggtgtctctgctacaaagggtgg
aaaggagcgtcctgctctatagagatcaaagacgacgcctgtggcggcgtgtgtgatgac
aatgccaactgtgtcacaggaccacagggatcagctgccgtttgcgtctgtgtcgctggt
tacgatggaaacggaacccactgcagagagctggatctgtgcagcattaggaacggtggc
tgctcggagtttgccaactgcacaaaggtctctgctggtgagagaacctgtacctgcaaa
gagggttacaccggtgatggagtcgtctgtctggaaatcgatggctgtctggtcaacaat
ggaggctgccacaaagcagcagagtgcaccagagctggcccaaacattactgcctgcagg
tgtctgacaggcttcgagggaacagggaggttctgccacccagtcaacccctgcaaaacc
aacaacggtgactgcagtagatacgcaatctgccggtatatgggggagggccagaggaac
tgcacctgtcgaagcggctacattggggacggcttcgactgcaggggaaatacctacaac
gaggtgctccggcagtcagagaacgggttctttcagaaaatgatgtcgaaatccagcagt
cgcccccttggtaacggaccgtttaccgtcttcgtgcctctggaggaaaccaacaatgac
tccataattgatgaatggaaggaacggggccgcctggagcacatggttgattaccacatg
gtttcctgtgagattctgaccttaagtgacctaaaaaccaccagcagtgtggtctctctg
tcgggatacactctggagttcagtgtgaaggagggttcggtttggatcaacaacaaatcc
atgatcgtgaagagcgactacgccacaaccaacggagtcatccaccacatcgacagattg
ctgacgccctacaacctgcaagacaagccgcagattaacattaaaatgaacttcagcact
gcagcaacgttttatggttatggacgcttttataagctaattgaggatgcaggtctgctc
ccagtgctccggatgtccatccaccagcccttcaccatcttctggcccactgacaaggcc
ctggactccctgccagccgaaaggcagcgctggctctccagtccggaccaccaggaccag
ctagctgctacgatcaaggctcacatcatccgcaattttgggaagataaaagttggccag
gctggtaaatctacatcataccggaccatgcatggatccaccatcaagttgagctgtgac
aagaagctggtgggatctatattgatcaatgaaaacgaagccaggctggtggatcgctac
atttccttcatggagggcgcgggatttgggatcgaccagcttctggagccacctggactg
ggagcgttctgcgacagcatacagaacaaaactacttacggccgctgtgggagctgtttg
tcccctccacgctgtccccaactcgacacggggaaaacgatgagctgtatgcggccccgc
ttcgggtatcgaaccagctggtatgatgacctgaatcgttatggaagaaaacgctgcaag
agagtttgtcagtttcctgcctgggtcccgaaatgctgcaaaaatcactacggcagcgaa
tgtcgtgtgtgtccaggtggagttgaagacccctgcagcagccatggagactgtcaagat
ggtgttactggttcaggagcatgtaaatgctacaaaggattcaaaggaaagtcatgtgac
ctctgcgagacgggttactatggtaccaactgcacagcctgcagctgcgtgaaggggagc
tgcgatgacggcatggatgggaccggccagtgtgtctgccagccaggttgggaaggagat
cgctgccagaacaagattggctcagtccctgagaattgccggcagtgccatgcccaggcc
aggtgtgtgttcaatgtcggctgtcagtgcatacctggatatgagggcaatggtactttc
tgcagtccagttccacgtgagtcattttcagctgaatccttaaatgagcggaggtgtgag
tgcctcccagggtatgtgggtaatggagtccagtgtctagagaaagtggtgccccctgtt
gaccgttgcctggaagagaacggaggctgtgaccctgtggccacctgcaaggacctccat
taccatgccaacacagggggagtgttccacctgcgctccccagaggggaagtacatgatg
aacttcacccaggcaacgatgggctgccaggctgaggacgctaccctggccacgtttcaa
cagctgggagatgctcagcagctcgggatgcatctgtgtgttgctggctggatagaagga
gggagggtaggatacccgatccgcttcccctctgtcaaatgtggagacaaccacgtgggc
ttggttatgtacaaagacccggtggaccagagcagcaagtacgacgcctactgctacagg
ctcagagacgtgtcctgttcatgtcctgagggttatgttggaaacggtgacttctgcaac
ggcgtcctgaccagtgtcctggccacaaacagcaacttctccattttctacaagttgctg
gtggactacggcggctcgtcctccgaaggcaggcagctcatcgacatcttggctcacagg
aagtctgaactcacactgtttgttccccataactctggatttgctccgaacctgactctt
tcggaaagagatctggagtatcacatctcaaccaatcacagcaggcgaccatttaaggat
ctaaagcaccaggaagtcctccaatccaggcttgggttcaacctgaccgttacctatggc
aacaacgagagctgtaaactggtgaaccagcggctgctgctggactgggacattcctgcc
gtgaacgggatcattcatgtcctggaggcgccgctgacagcccccgcccccctggtgatc
cacagccgctccagaggccacgcccactccactggggtagcgtcagccatattggttccc
ttgttggtatgtgtgctggcagcactggggtactacctcttcaggcaaaagatggacgcc
ttccgcttccactacttcaaaaatgaggatgaagatggtgctgcaggtggaccaaccaaa
ccaacgctggtttccatcccaaaccctctctacagcggctccagggccttcgctgagccc
tttggggaaatgacttcagcagcggaaccagccgagcccacagaacctccaaacattttg
gacttggaccagtga
DBGET
integrated database retrieval system
