Cyprinodon variegatus (sheepshead minnow): 107091358
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Entry
107091358 CDS
T06110
Symbol
dis3
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107091358 (dis3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107091358 (dis3)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107091358 (dis3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
107091358
NCBI-ProteinID:
XP_015240700
Ensembl:
ENSCVAG00000019095
UniProt:
A0A3Q2EFI0
LinkDB
All DBs
Position
Unknown
AA seq
951 aa
AA seq
DB search
MLKSKTFVKKTRSGGVMKVVREHYLRDDIWCGSEICTECKQDSTVLQRDACIESNLCTFP
HYLVPDTNVVLHQIDVLEDPVICNVIILQTVLQEVRHRSAPVYKRLKDIIHEQGRHFYTF
TNEHHRETFIEREPGESANDRNDRAIRVAVKWYSQHLKTDESGPDGVRVVLLTNDQGNKQ
KAEDNGLLVYRFEEYIKSLIANTELVDRLALSNEDKNEIASSKILFPEHLPLSKIQAGIK
SGSFIQGTFRASRDNYLEATVFVQGEGEDSNEVLIQGLQNLNRAVHQDVVAVQLLPKNQW
VAPSSVVLQDEGAAKDDDVDGDEEEKLLKQSLTKSTRKATGKVVGIIKRSWRPFCGMLNV
SQIKESTRHLFTPADRRIPRIRIETRQASTLAGQRIMVAIDGWPKDSRYPNGHFVRSLGN
AGEKDTEEEVLLLEHDVPHQAFSQAVLSFLPKMPWIITPEDMAQRQDLRHLTVCSVDPPG
CTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDKEAANRGTTVYLCGKRIDMVPE
LLSSNLCSLRSNVERFAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDDTNK
NDDITKSLRGLNKLAKILKRKRIENGALTLSSLEVRFHIDSETHDPIDLQTKELKETNSM
VEEFMLLANISVAQKIYDEFPECALLRKHPAPPPSNYDILMKAAKSKNVTIHVDSAKALA
DSLDGAKVDGFQYFNTLLRILATRCMMQAVYFCSGMDSDFHHYGLASPIYTHFTSPIRRY
ADIIVHRLLAVAIGADSTYPDLMDKHKQSALCNNLNYRHKMSQYAQRASVAFHTQLFFKT
RGILNEEGFVLFVRKNAIIVLIPKFGLEGTVFFDSKDKASPKLVFDEEGPTLKVEQHTFN
IFDKVKVTISLDDSNIQHQKIRMALIEPVIPGVSVPVPEAEPQAKKQKLDR
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagtctaaaaccttcgttaagaaaacccgatcaggcggggtgatgaaggtcgtg
cgagaacattatctgagagatgatatttggtgtggaagtgaaatctgcactgaatgcaaa
caagactccacagttcttcagagagacgcttgtattgagagcaatctgtgtacctttcct
cattatttggtccctgacaccaacgtagtgctccaccagatcgacgtgttagaagatccg
gtgatctgcaacgtgatcatcctgcagactgtgctgcaggaggttcgtcatcgcagcgct
ccagtttataaacggctgaaggatataatacatgagcaaggaagacacttctacacgttc
accaacgaacatcacagagaaacattcattgaacgggagccaggggagagcgccaatgac
cgtaatgaccgggcgatccgtgtggccgtcaaatggtacagccagcatctgaaaacagat
gagtctggcccagatggtgtcagagtggtcctcctcaccaacgatcaaggcaacaagcag
aaggctgaggacaacggcttgctggtgtacagatttgaggagtacatcaagagtctgata
gcaaacacagagctggtggaccggctggcattgtccaatgaagacaagaatgaaattgcc
agcagtaaaatattgtttccggagcatcttcctttgtccaagatccaggcaggaatcaag
agtggctcgtttatccaaggcactttcagggccagcagggacaattatctggaggcgaca
gtgtttgtccagggagagggagaagacagcaatgaggttctgatccagggacttcagaac
ctcaacagagcagtgcaccaggatgtggtcgccgtgcagctgttgccaaagaatcagtgg
gtggcgccctcatcagtcgtgctgcaggatgaaggagcagcgaaggacgacgacgttgat
ggggacgaggaggaaaaattgctgaagcagtcactaactaaatcgaccaggaaggcaaca
ggaaaggtagtaggaatcatcaagaggagctggaggcccttctgtggcatgctgaatgtc
tcccaaatcaaagaatccacacgccatcttttcaccccggcagaccgccgtatcccacgt
attcgcatcgaaacgcggcaagcctcaactcttgcaggccaaaggatcatggtggccatt
gatggctggcccaaggactccagatacccaaatggccattttgtccgcagtctgggaaat
gctggggagaaggacacagaggaagaggtcttgcttctggagcatgatgttccacatcag
gccttctctcaggctgtgctcagtttccttcccaaaatgccttggatcatcacaccagag
gacatggcgcagaggcaggacctgaggcatttgacggtgtgtagcgtcgatcctccagga
tgtacagatatagacgatgctctgcactgtcgagagctggaaaatggaaaccttgaggta
ggagttcacattgccgatgtcagtcactttatcagacctgggaacgctctggataaagag
gccgccaaccgcggcaccactgtgtatttatgcggcaagagaatagacatggttcctgag
ctgctcagctccaatctttgttctctaaggtccaatgtggagaggtttgctttttcgtgt
atttgggagatgaatcacaatgcagaaatcctaaaaacccgattcactaaaagcgtcatt
aactcaaaggcatctctaacttatgccgaggcccagatgagaatagacgataccaacaag
aacgacgatattacaaaaagcctgaggggcctaaacaaactcgcaaagatcctcaagagg
aagaggatagaaaacggggcgctgacgctgtcctccttagaggttcgcttccacatcgac
agtgaaacccacgacccgattgacctgcaaactaaagaactcaaggagaccaactccatg
gtagaggagtttatgttgctcgccaatatttcagttgcacagaagatttatgatgagttt
ccagagtgtgctttactgaggaaacatccagcgccgcctccatccaactacgacatcctg
atgaaggctgcgaagtccaagaatgtgacgatccatgtggattcggccaaggctctggcc
gattccctggacggggccaaagtggacggtttccagtattttaacacactcctgcgcata
ttagccacccgctgcatgatgcaggccgtctatttctgctcagggatggacagtgacttc
caccattatggtctggcctcacccatttatacacacttcacctctcccattaggaggtat
gctgacatcatagtgcaccgcctgctggcggtggccataggagcagacagcacctaccct
gacttgatggacaaacacaaacagtcggcactttgcaacaacctgaactacagacacaaa
atgtctcagtacgcgcagagagcatctgtggccttccacacacagctgttcttcaagacc
cggggaatactcaatgaagagggattcgttctgttcgtgaggaaaaacgcgatcattgtt
ttgatcccgaagttcggtctggaaggaactgtcttcttcgactccaaagacaaagcttca
cctaaacttgtttttgacgaagagggtcccactctgaaggtggagcagcacacgttcaac
atattcgacaaggtgaaggttaccatcagcctggatgactccaacattcagcaccagaag
atccgcatggctctaatagaaccagtgatccctggtgttagtgttcctgtacctgaggca
gaaccacaagccaagaaacaaaaactggaccgctga
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