KEGG   Cyprinodon variegatus (sheepshead minnow): 107091410
Entry
107091410         CDS       T06110                                 
Symbol
wdr43
Name
(RefSeq) WD repeat-containing protein 43
  KO
K14546  U3 small nucleolar RNA-associated protein 5
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    107091410 (wdr43)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cvg03009]
    107091410 (wdr43)
Ribosome biogenesis [BR:cvg03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    107091410 (wdr43)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Utp12 WD40_CDC20-Fz WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd DSE1_N WDR90_beta-prop_4th WD40_Gbeta Beta-prop_VPS8 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_IFT140_1st Beta-prop_CAF1B_HIR1 Beta-prop_Aladin EIF3I Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_NOL10_N ASA1 WD40_MABP1-WDR62_1st PEP5_VPS11_N Beta-prop_HPS5 Beta-prop_ACSF4 Beta-prop_SCAP WD40_2 Beta-prop_Nup120_160 Beta-prop_IP5PC_F Paf1 NBCH_WD40 Beta-prop_NUP159_NUP214 Tricorn_2nd SGL Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 107091410
NCBI-ProteinID: XP_015240808
Ensembl: ENSCVAG00000016604
LinkDB
Position
Unknown
AA seq 595 aa
MAAGDGSLPQQLPCVFSPKSRQYLAVCAQDGRLRVWNTDSKTLQQEFVPSAHLSATCTCI
AWGPCRTVKEGPQRKKRKSEAAQVEEKADLLAMGTAAGTVLIYSTAKGALHCTLDGAHSG
GVNCVHWHPEDSLLYSGSDDTNIVEWDLQSGKTRSKWKADRAAVTSLSVSPDGKLLLSAG
HVIKMWDLETKEVYRKFTGHSTAVTTLRFATSRPPDSNGLYFLSGAAHDRLLSVCQSLNS
TAVSSSLIHEFASLVDLNVFKGQFNTVKPNQSPFFPKLCSVSVYHPVFLLPLQEINTAER
HVCLTRDVKTSLSLSMETTASKVKTPVINAKSKVLVPGLPGHTAPLTAAQQGTEKRKKDS
DNKEMSIAERLGEIDLEAVSSQKGASRAAASLQTDNFAILLMQGLESNDDDILNKVFQTR
KDVLIKKTVARLPLSAVIPLVEELTKRLQGHPLTACLMVRWLKAVLMHHTSYLASLPDLV
AQLGVLYHMIESRVKMFHKLTKLHGKLHLLTTQVAANDSSNAVSEVDHTAKLVYEEESSD
EDDASVDEALPDEGSDHWDEEEAMQDDEDDDPDRREEAKANGEEDMEHENESEEE
NT seq 1788 nt   +upstreamnt  +downstreamnt
atggcggcgggcgacggtagcctcccgcagcagctcccttgcgttttttcacctaaatcg
cggcagtacttagcggtgtgtgcccaggacggcagactccgcgtctggaacaccgacagt
aaaactcttcagcaggagtttgtgccttcagcccatttaagcgctacttgtacctgcata
gcatggggaccatgccggacggtgaaggaggggccacagaggaagaagaggaaatcagag
gcggcgcaggtggaggagaaggcggatctgctggctatgggcacagcggctggaactgtc
ctcatctacagtacggccaagggagccctgcactgtactctggatggagctcacagtgga
ggagtgaactgtgtccactggcatcctgaagacagcttattatacagcggctcagacgac
acaaacatcgtggagtgggacttgcagagcgggaaaacacggagtaagtggaaagcggac
cgcgctgcagtgaccagtttatctgtgagccccgatgggaaactgctcctctcagctgga
catgtgatcaagatgtgggatttggagaccaaggaggtttacaggaaattcacaggccat
tccacggccgtgacgaccctgcgctttgccacatcacggcctcctgacagcaatggcctt
tacttcctgtcaggagcagcacacgacagactcctcagtgtttgtcagtctctaaactct
actgctgtgtcctcatcactcatacatgaatttgcatctttagttgatctaaatgttttt
aaaggacagtttaacacagttaaaccaaaccaaagcccttttttccctaaactctgctct
gtgtccgtttaccatccagtctttcttctgcccttacaggagatcaacacagcggagaga
cacgtatgtttgacacgagacgtgaagaccagcctgtccctctccatggagaccaccgcc
tccaaggtgaaaactccagttattaatgcgaaaagcaaagttttggttccagggctgccg
ggtcatacggcgcctttaacggcggctcaacagggaacggaaaagaggaaaaaagactct
gacaataaggagatgtccatagctgagcgactcggtgaaatcgacctggaagcagtttct
agccaaaaaggagcatctagagcggcggcttcgttacagacggacaactttgccattctt
ctgatgcagggcctagagagcaatgatgacgacatcctaaacaaagttttccagactcgt
aaagatgtgttaataaaaaagacggttgctaggttaccgctctctgccgttataccgtta
gttgaagagctaacaaagaggctccaggggcaccctttgacggcgtgtctgatggtacga
tggctgaaggcggtcctcatgcaccacacatcatacctggcatcgctgccggacctggtc
gcccaactgggggtgctttatcacatgattgagagccgagtgaagatgttccacaaactg
acaaagctgcatggaaagctgcatctcctaacaacgcaggtggcagcaaatgacagcagc
aatgctgtgtcagaggtcgaccatacagctaaactggtgtatgaggaagagtcgtctgac
gaagacgacgcctctgttgatgaagctcttccagatgaaggctcagatcactgggatgaa
gaggaggcgatgcaggacgacgaagacgacgatcctgacagaagagaagaagccaaagcg
aacggcgaggaggacatggagcacgaaaacgagagcgaagaagaatga

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