Cyprinodon variegatus (sheepshead minnow): 107091803
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Entry
107091803 CDS
T06110
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013
Nucleocytoplasmic transport
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107091803 (upf3a)
03015 mRNA surveillance pathway
107091803 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107091803 (upf3a)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107091803 (upf3a)
mRNA cycle factors
P-body specific factors
107091803 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
PagP
Motif
Other DBs
NCBI-GeneID:
107091803
NCBI-ProteinID:
XP_015241453
Ensembl:
ENSCVAG00000022333
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MRSDKDQMTAGKDKGVVEIHLKDFQGEQENAPASAKLKEEKREVFTKVVIRRLPPNLSKD
QLEEHLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKSTEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEDKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERKRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKDIKIKLLKKSDRDDDADSDRIKEKSDPCDVGGGKWEKTGGQPKSK
DPKENRGQPESDKEQREQHSRRQRDKDHRGKDDERKRQRHHYEFEKFMRRKDETKWGKGY
CQDRAKKEGHHHGYSYCPDSGDKMGKEDREDLSNRKERLRNKVSEKDRPAMQLYQPGARN
RKRMGSANKPYDCLPIGHSPECRTEHCYEVLNMGTGKERGFEKSKDEQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgataaggaccaaatgaccgcgggtaaagataaaggagtcgtcgagattcat
ttgaaagactttcaaggagaacaggaaaacgcccccgccagtgctaagctgaaagaagag
aaaagggaggttttcacgaaggtggttattcgaaggcttccacctaacctgtcaaaggac
caactcgaagagcatcttagtcctcttccatcttatgactattttgagttttttccagca
gatcaaagtctttatccccacctgttttcccgagcttatataaacttcaaaagcacagaa
gatatcctgctgtttcgagatcgatttgatggttatgtcttcattgacaacaagggccag
gagtatcctgctgtagtagagtttgcccctttccagaaaatttccaaaaagaagctgaag
aagaaagatgccaaggctggaagcattgaagaagatccagaatataagcgtttcttggag
aactactcctgtgatgaagacaagtccatggccaatcctgagacccttcttggggagata
gaagctaagactagagagctcatagccaaaagaacgacgcccctcctggagtacataaaa
aacaagaaaatcgaaaaacagaggatccgagaggagaagagagaagagagaaagcgacgg
gaacttgaaaagaaaaggcaacgtgaagaagagaagcgaaagcgacgagaggaggagagg
cgcaagcgaaaagaggctgagaaacagaaaaagctttctgaaaaagacatcaagattaag
cttttaaagaagagtgacagagatgatgatgctgattcagatcgaataaaggaaaaaagt
gacccttgtgatgtaggtgggggcaaatgggagaaaactggaggacaaccaaaatcaaag
gatccaaaagaaaacagaggtcagcctgagagtgacaaagagcagagagagcagcacagc
cgcaggcagagagataaggatcaccgtggtaaggatgacgagagaaaacggcaacgacat
cactacgagtttgaaaagttcatgcgccggaaagatgagaccaaatgggggaagggctac
tgccaggaccgggccaagaaagagggccatcatcatggctattcttactgtcctgacagt
ggagataaaatgggaaaggaggacagggaggatctgagcaatagaaaggaacgcctccga
aacaaggtgagcgagaaggaccgtccagccatgcagctctatcagccaggtgcgcgcaac
aggaagcgtatgggttcagctaataaaccttatgactgcctccccattggtcattcccct
gaatgcaggacggagcattgttatgaggtcctcaacatgggaactgggaaggagagggga
tttgagaaaagcaaagatgagcagtga
DBGET
integrated database retrieval system
