Cyprinodon variegatus (sheepshead minnow): 107092007
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Entry
107092007 CDS
T06110
Name
(RefSeq) chondroitin sulfate proteoglycan 4-like
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cvg00535
]
107092007
04091 Lectins [BR:
cvg04091
]
107092007
Proteoglycans [BR:
cvg00535
]
Cell surface proteoglycans
Others
107092007
Lectins [BR:
cvg04091
]
C-Type lectins
Others
107092007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Jag_N
DUF4381
RNA_pol_Rpb5_C
TMEM154
ASFV_J13L
Motif
Other DBs
NCBI-GeneID:
107092007
NCBI-ProteinID:
XP_015241759
LinkDB
All DBs
Position
Unknown
AA seq
2559 aa
AA seq
DB search
MGSFLADLLILLLISLGHVYAVSFHGNGYIHLQTIEKSIQTSIHVRFRTSSQSGLIFLAA
GRRDFLLLELISGRLQVRLDLGSGERSLRSAKGTHFNDLAWHTVDLNHTQHNINMTVDRT
SYTTLRMPGPDLELSIEDGLLVGGTAGLNHHYLLNISAGFRGCLDEVVFNEHNLLSSLQG
NSGYKRIHEVSLGCSPLFSATEEDPVRFSSSKAFISLPQWEVLQEGIFECELHPSWKEEN
GLVLYSFGSEGGFVSMEIRNGHVVASVGNGKGGKTEVHSLTHVYSKHTWYTIQVLLLPDS
IQLKVGKELVKTSLSQDLQDIQLKGPLFLGGLDEVALEKAKSAGLSSVSLEKGGGGRSFK
GCLQKITVNGQKTGLPHAIATKDVTVGCNIGQAPKVVIISSSTDLPEHDVATTQTIGYRR
VTNLLSLRALEVPEGGQALLEPKHIKVNLEFRKLGIHPSQLLCRIVEPPVRGQLRLNPSP
DPDGLPEETQERILGIGAEERDRTFSILDLWQGRVMYVHSGSEDQEDFFTFSIFSNNKNE
MPIFLEESHLHRFNISITPVNDAPVLSLPQGNLFTLPEKSRRQLTTDMLRVSDPDSRPED
LVFSTMGNLNSEAGYLENQDYPGRPINLFSLNDLEDGKITFVHTGVSASRLVLRASDGHR
VSNAVVLRIMAVTLEYKVENKTGLEVNQGEAAIISTSHLAVQVNMADSSVDVWYDVTELP
QFGEIQRLHSSGEWKSTTFFSQRLLEKERIRYLSTYHGIQTQSNVKDQFKCKIVINSIAR
EEVVFPIEIRWIQLKVTRSKMEVTGLESAVLTPEDLHVISKGIKISESDLFFRVLTVPKK
GRLFLRQKVLQRNSTFSQENITEGLVKYELFNRLHDDTRDSFSFQVFSAHAASTPYDFRI
NIKAESSAVTVLNKGLSILEGASKVITKDILFTHTGSSREVHYNVTVSPRHGQLRKINLS
NSTSINDNILTFTNQDITEERVMYVHDDSETKQDYFMFQIAVYKSNKQANRKDEGNPEEH
IFNISVQLVNDQRPVRVVDKVFHVARDGQRLVTLKDLRYRDDDSDFEDSWLVYTRRGIPM
GELVLASDPSHRLYEFTQRDLEQNKVLFIHSGVSFGRFVLFVTDGKHYVSALLEVIAQDP
YLQVENNTGLMVQQGGIAALTSANLSIISNLDIRDPQEVTFEVYVPPSQGVLCFNDGQKE
AIIGTDAISVFTQRDLVAGRLAYHHSGGHKLLDVFNVTARARERSTERLTERGRREVHLD
IGVPVKIYLESHHRPPTVKTNRPVVVAEGQNTSISREDVEVVHDDSLPSEIIFTVQVPPR
VGIIYKSPSNKNQEDIKGFKEQPTTSFTQEDLNQRSVMYQQQAAGSINDSIVLEATNGVT
KVGPFTVMIDIIPILLPLQVLNLTLDEGSSLPLTSSIIKVASHHFSGLNFLYQVIVSPRC
GHLEHSRIPGMPIHAFTHTEVEREYISYVHDGSETLMDNFTIIANQTEMKKHSLPCTVHI
TVTPVNDETPVVTTNRGLKVWVGSITEISTNELSAEDSDTPPEGLEYVVTPPSNGHLALK
RSPSRYILNFTQTHIQSRQLVFVHSGPLTGGFHFQVNDGVNFAPRQIFSTTAQALVLTLQ
KNHPMEVYPGSLTPISEQELQVVTNNISDIARNQSVVFAVTAPPKFGRLVQRMPDNSFRN
ISTFTQRMVNDGLILYDQNKPESVGWSAADSFSFTVSSPPAFLPPHTFTILISYQANDHL
GNPQQRTRLLNNAGAVVAEGGRVTIDRSKLDASNLLGNLPESNRKDHHIMYRVISLPRHG
ALTIQGHNLTRSQTDFSQATLNKFGIMYLHDDSETTKDSFTFRAWVAPLHLPSSSSSLPL
SSFSSDSSSSTSFSPLYSPSLPSYPALGTASHRHPTMDGVAVTEMFNITVTPVNDHPPLI
RSRAPSMKVVVGERVILGPDNLQVEDHDTPPEELHYLVISKPNNGFLTLGERPEPVTSFT
QYDVNHGRLHFTQQGEVSTGVFYFNVTDGHHRPLYKLFSLEVVKPSVSMVNNTGLSLVQG
RTAVVLTTNQLAAQTNGQRQANISYMVTKHPRHGRIAINDQEVTTFQHEDLQFGRVVYHM
TDLSESEDSFQISVSAWSSGVDYGRLTEQTVNVTVRPLVYLREPVRVPSGIAVKLGKAMI
DASELARISRVDPVFEVLSPPKHGKLVKITYDPNHASEALRSFTFRDVIQGRVAIEETLS
DADSQIHNNESTLTKARGHTPATPLNDSFTFLLKAGNVQPAKGELHFTIFPHHQMRHGTR
GFHKVRGASHEHVTTRFGAHNRTTLDDGHGEAEMHSTTAESLHPYILSNKNQNKTQRKIK
PHNRWGNRTRSHGGRSGTPPEIAVEGHTHAPQPHTPPVPEIQVPIIPPIPDLVNVEILPR
PASDPLLIILPLLACLLLIVILVVLILVFRHRKEKQARQRLMHELAAMQLPSEDSPYPGR
PQRSMAMPNVLVTQLGSASCPTSPRVSMTPRRSLAPGMTFWGPIESDLAGRDGNIRGRNN
SEIENLGCANMPQVSPAGFKTAWRSRSPTPTLKDSQFWV
NT seq
7680 nt
NT seq
+upstream
nt +downstream
nt
atgggaagttttttggctgatctgctcatactactgctgatttctttaggacacgtttat
gcagtttccttccatggcaatggctacattcacctgcaaactatagagaagtccattcag
acgtccatccacgtacgatttcgtacctcaagccagtctgggctaatatttttggcagca
ggacgcagagacttcttacttcttgagctgatctctggacgactgcaggtacgtctggac
ctgggctcaggtgagcggtcgctgcgttcagcaaagggaacccactttaatgatctggcc
tggcacacagttgatctaaatcacacacagcacaacatcaacatgactgttgaccgaacc
tcttacactactctccggatgccaggaccagatttggagctcagtatcgaggatgggctc
cttgttggtgggacggcgggacttaaccatcattaccttctaaacatctcagctggcttt
agaggttgcttggatgaagttgtcttcaatgaacacaacctactctctagccttcagggg
aattctgggtacaagagaatccatgaggtttcactgggttgcagtccactgttttcagca
acagaggaagatcctgtgaggttttccagctctaaagccttcatctctctaccccaatgg
gaggttcttcaagaggggatatttgagtgtgaacttcacccttcttggaaagaagaaaat
ggattggtgttgtacagctttgggagtgaaggagggtttgtctcgatggagatcaggaat
ggccacgttgtggcctcagtaggaaatggaaagggtggtaaaaccgaggtgcattcactg
acacatgtctacagcaagcacacctggtacaccatccaggtgctcctactacctgatagc
attcaactgaaggtaggcaaggagttagtgaagaccagtctgagtcaggacctccaggac
atccagcttaaagggcctctcttccttggaggactggatgaggttgctctagaaaaagca
aaaagtgctggattatcttctgtttctcttgaaaaaggaggagggggaagatcatttaaa
ggctgtctacaaaaaattacagtgaatggccaaaagactggcttacctcatgccatagcc
actaaggatgttactgtgggctgtaacataggccaggctccaaaggtagtgatcatatcc
agttccacagatttgcctgagcacgatgttgccaccacacagactatcggctacaggagg
gtcacaaatttattgtcgcttcgagcgttggaggtccctgaaggtggccaggcactgctt
gaacccaaacacataaaggtaaatcttgagtttcgcaaactagggatccatccatcacaa
ctgttatgtcgcattgttgagcctcctgttcgtggtcagctgcgtttgaatccaagtcca
gatccagatgggttgcctgaggagacacaggaaaggatcctcggaataggggcagaggag
agggatcgtactttcagcatcttggacctgtggcagggccgggtcatgtacgttcatagt
ggctctgaagaccaggaggactttttcacattttccatcttctctaacaataagaatgag
atgcctatatttctggaagaaagtcatttgcaccggtttaatatcagcataactccagtt
aatgatgctcctgttcttagtttgccacaaggaaacctgtttactctgcctgagaagtct
agacgacagctgacaacagatatgctgagagtgtcagaccctgacagcaggcctgaggat
cttgtctttagcacaatgggaaacctaaattctgaagctggttaccttgagaaccaagat
taccctggcaggcccatcaacttgttctctctaaatgatctggaggatggtaagatcacc
tttgtgcacacaggagtttctgcatccaggctggttctcagagccagcgatggacataga
gtcagcaacgcagtagttttaagaatcatggcagtgacacttgaatacaaagtagaaaat
aaaaccggactggaggtgaatcagggggaagctgccatcatcagcaccagtcaccttgct
gtacaggtcaatatggcagatagttcagtagatgtgtggtatgacgtgacagagttgcca
cagtttggtgagatacagaggttgcactcaagtggcgaatggaaatccaccacctttttc
tcacagagacttctggaaaaggaaaggatccgatatctcagcacctatcacggaattcag
actcaaagcaacgttaaggaccaattcaaatgtaaaatagtcatcaattcgattgcaaga
gaggaagttgttttccctatagagatccgctggattcaactgaaagtaacacgtagcaag
atggaagtgactggtcttgagagtgccgttcttacgcctgaagaccttcatgtgatttct
aaaggtattaaaatcagtgagagtgatctcttcttcagagtcctgacagtaccaaagaaa
gggaggctgttccttagacagaaggttttgcaaaggaactcaacctttagccaagaaaac
atcacagaaggtttggtgaaatatgaactttttaacaggctgcatgatgacactagagat
tccttcagctttcaggttttttctgctcatgctgcttcaacaccttatgacttcagaatc
aacatcaaagcagagtcaagtgcagtaactgtcctaaataaaggcctttcgatccttgaa
ggagcaagtaaagtaattacgaaggacattttgttcactcacacgggaagtagccgagaa
gttcattataatgtaactgtgagccccaggcatgggcagttaaggaagatcaatctgtcc
aactcaacttccattaatgacaacatactgacattcaccaatcaggacatcacagaggag
cgtgtcatgtatgttcacgatgatagcgagaccaaacaggattacttcatgtttcaaatt
gctgtgtataaatctaacaaacaggcaaacaggaaagacgagggaaaccctgaggagcac
atctttaacatctctgttcaactagtcaacgatcagagacctgtcagggttgttgataag
gtcttccatgtggcccgggatggacagaggttggtgacattgaaagatctgcgctaccga
gatgatgactcggattttgaggacagctggttggtctatacaaggagggggatcccaatg
ggagagctggtgctggccagcgatccaagtcacaggctgtatgaattcacacagcgggac
cttgagcagaacaaggtgttgtttatccacagtggtgttagctttggccgctttgtgctt
ttcgtaacagatgggaaacactatgtgtcagcgctcctggaggtaattgcacaagatcca
tacttgcaagtggagaacaacacgggtctgatggtccagcagggtgggattgcagccctg
acttctgctaacctcagcatcatcagcaacctagacatacgggacccccaggaagtgact
tttgaggtctacgttccacctagtcagggcgtgctctgctttaatgatgggcagaaggag
gcaatcattggaactgatgccatttcagttttcacccagagagacttggtggcaggacgt
ctggcctatcaccacagcggaggccacaagttgttggacgttttcaatgtgacggcaaga
gcaagagaaagaagcactgagaggctcactgaaagaggaaggagggaggtgcatttggat
atcggagtgccggtaaaaatatatttggagagtcatcacaggcctccaaccgttaaaacc
aaccgcccggtggtggtggcggagggacagaatacctccataagcagggaagatgtagag
gtggtccacgatgacagtttaccctcagaaataatcttcactgtccaagttcctcctaga
gtcggcatcatttataaatcaccaagcaacaaaaatcaggaagatataaagggtttcaag
gagcagcctacaacctcattcactcaagaagatctcaaccagagatctgttatgtatcag
cagcaggctgcaggaagtattaatgactctatcgtcttagaggcaacaaatggggtgacg
aaggttggaccttttacagtgatgattgacatcataccgatcctgcttcccctacaggtg
ttaaacttgactctggatgaagggtcgtccctgcctctcacatcgagtattatcaaggtt
gccagtcatcacttttcagggctgaatttcctttaccaggttattgtttcaccaagatgt
ggacatttggagcacagccgtatcccgggaatgcctatccatgcttttacacacacagag
gtggagcgtgagtacatctcttatgtccatgatggtagtgaaactctgatggacaacttt
acaattatagccaatcaaacagagatgaaaaagcatagcttgccttgcacggttcacatc
acagtcacacctgtcaatgatgagacccctgttgtcaccaccaaccgtgggctaaaggtg
tgggtggggtctattacagaaataagcaccaatgaactcagtgcagaagactcagatact
ccacctgagggcctggagtatgttgtcacaccacctagcaatggtcacttggctctgaag
cgctccccatctagatacatcttgaactttacccaaactcacatacagagcaggcagctg
gtgttcgtccacagcggtccattaacggggggctttcactttcaggtgaatgatggagtt
aattttgctcctcggcagatcttcagtaccacagcccaagctcttgtccttactttacag
aagaaccaccccatggaggtttacccaggctcgttgacgccaatctcagagcaggagctt
caggttgttaccaacaacatcagtgacattgcaagaaaccaatctgttgtttttgctgtg
actgctcctccaaaatttggtcgcctggttcaacgaatgcctgataactcttttagaaac
atttccacgtttactcagcgcatggtgaatgacgggttgatcttatatgatcagaacaag
ccagagtcggtgggctggtcagctgcagactccttctctttcaccgtgtcctctcctcca
gctttcctccctccacacaccttcaccattttgatctcctaccaagccaacgatcacctt
ggcaaccctcaacagaggaccagactactaaacaatgcaggtgctgtggtagcagaagga
ggcagagtgactattgaccgctctaaacttgatgcctccaacctgctgggaaacctcccg
gagtccaacagaaaggaccaccacatcatgtaccgagtgatttctctgcctcgacacgga
gcactgactatacagggacacaatctcaccaggagccagacagatttctcacaagctacc
ctgaacaagtttgggatcatgtacctccatgacgactcagagacaacgaaggacagcttt
acttttcgggcctgggtggctcctttgcatcttccctcttcctcctcttcattgcccttg
tcttccttttcctccgattcctcgtcttccacttctttttcccctctctattctccttcg
ttgccctcctacccagcactgggcacggcttctcatcgccaccctaccatggacggcgtg
gcagtgacagagatgttcaacatcactgtgacgcctgtcaatgaccatccaccgttaatt
agaagcagagccccgagcatgaaggttgtggttggggagagagtcattcttgggcctgat
aaccttcaggttgaggaccatgatactccaccagaagaactgcactaccttgtgatcagc
aaacccaacaacggtttcctgactttgggagaaagacctgagccagtgacttctttcaca
cagtatgacgtcaaccacggccgactgcatttcacacagcagggtgaggtctcaactgga
gttttctacttcaatgtcaccgatggtcatcaccgtccactctacaagctgtttagctta
gaggttgtgaagccatctgtatccatggttaacaacacaggcctgtcgttggttcaaggc
cgcactgcggttgtgttgacaaccaaccagctggcggctcaaaccaacggtcagaggcag
gctaatatctcctacatggttaccaagcacccacgccatggacgcatagctatcaacgac
caggaggtcaccaccttccagcacgaagacctccagtttggtcgggtcgtctatcacatg
actgatctcagcgaatcagaggacagcttccagatctcagtgtccgcctggtcttctggt
gttgactatgggagactgacggagcagacggtgaatgtcactgtgaggcctctggtctac
cttagagaaccagttagagtcccgagtggtattgctgtaaaattgggaaaagccatgatt
gatgcctccgagctcgccagaatcagcagggttgatccagtttttgaggttctctctcca
ccgaagcatggcaaattagtcaagattacctacgatccaaaccatgcatcagaggcactg
aggtcatttacattcagggatgtcatacagggcagagttgccattgaagagactctcagt
gacgccgacagccagatccacaataacgaatccacgctcacaaaggcccgtggccacaca
ccagccactcccctcaacgattccttcaccttcctgctaaaagccggaaacgtccagcca
gcgaagggcgagcttcacttcaccatctttccacaccaccaaatgcgacacggcacaaga
ggtttccacaaagtacgtggagcaagtcatgagcacgtcaccacccgtttcggagcccac
aacagaacgactttagatgatggacatggagaggctgagatgcacagtacgactgctgag
agtttgcacccttacattttgtcaaataaaaaccaaaacaagactcagcggaagataaag
ccccacaaccgctgggggaaccgtacgcgcagtcatggaggaagatcagggaccccccct
gagatagcagtagaggggcacactcatgctccacagccccacacccctcctgtcccagaa
atacaggttccaataatccctcccatccccgacctggttaatgtcgagatccttcctcgt
cctgcctctgaccccctcctcatcatcctacccctcctggcttgtttgcttctcatcgta
atccttgtggttctgattcttgtttttcgccatcgcaaagagaaacaagctcggcagcgg
ctgatgcacgaactggctgcaatgcagttacccagtgaggacagcccttacccgggccgg
ccgcagagaagcatggccatgcctaatgtgttagtcacccaactcggctctgcaagctgc
cctacctccccaagggtatccatgaccccaaggaggagtctggctcctggcatgaccttc
tgggggccgattgaatctgatttagcaggtagggatggaaacatcaggggtcgtaacaat
agtgaaatagaaaatctaggctgtgctaatatgccccaagtttctcctgcagggtttaaa
accgcttggagatcccggtcccctactccaactcttaaagacagccagttctgggtttga
DBGET
integrated database retrieval system
