Cyprinodon variegatus (sheepshead minnow): 107092074
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Entry
107092074 CDS
T06110
Symbol
rttn
Name
(RefSeq) rotatin isoform X1
KO
K16484
rotatin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cvg03037
]
107092074 (rttn)
Cilium and associated proteins [BR:
cvg03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
107092074 (rttn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RTTN_N
ARM_6
Motif
Other DBs
NCBI-GeneID:
107092074
NCBI-ProteinID:
XP_015241842
Ensembl:
ENSCVAG00000013556
LinkDB
All DBs
Position
Unknown
AA seq
2241 aa
AA seq
DB search
MEMLSPLIKKMGHSLVEIRVRALKSILSKLKHSLITVTDIVQEKMLFVYLLEWFNFPEVP
MKEDVLGLLLTLSKHPSSAQMLRDVGAVDFLSQLSSTVEPRLRAVIDGTLDQLFQLPELL
PSHSAVYSHGSCSTTTTASTIVSGDNKLPKIGYFHDRMQSNSNAPPQKIAVRESVRCLKF
SVFPWLTLTNTDRHILSSNESSLGSSDPNMVRTTCELLCDVILQDFPAEIFLQRPGIVKN
LLLLLRLGSGKGEVGYLRSSALSCLRQLCVGLQRKLRFHQDPGFYSAKQDPLSQNSSFSY
AQEVRGNRRSQASSPAAELSPRPSVVGRSSQRARGDGQDGDAASNSSSHRGGATVQGPEQ
TPRSPADAAQLQLPDLSMEDVLELQLQQLNLAQFSVATMQHAIPLLKTDGLHVFHRVLEL
LCDALLLLRDSVCELVWDDRSLVGMELKEKLQACMEQLGDILYLHQNHSADDPDSSQVYH
RMAYIGTAIFTIKLLQTILPPEKASENLPENTATALFHLSVDSSLGSLFPSMQETAVAYL
EQVNSDGHSLYRRMNRAALWMESTCNFIKEAQADGEKNWLDLLELADQTIDGLPFHQHLP
IIKECVHMCSHLWKFDQPSPLLQSESQKLFLKLLSHPSPPVKTETYECALNLVKDCLGIQ
NLSRQEAAACEGVNFLLHRRVLYEMSAFGLQDSAERVNIAAKDILLFLLKGRLMMTAPAW
DRFNEALYPVIPILQGYASTEESLGKAVLLISDMSDVTRDNVFPTTGKLKAALRLLFSKQ
PTVRIAAVQHILPHLTSSAEDNPTRPDADQSLMTSLPNLFCLRNPVDVTLDTSYKSILKV
EAVEKLFCILSSDTVDLSIRRSAAEQLSVVLQDTAVHSVLKNLGIAEKVISFITDSVNGN
KSFDLLLEPCACILRKLVYADSSLRHSLAQNNLLLLTLLRASLLLKEIKGNGTETAVLMC
LLLFDEIASIETWSEKSTKDASLSAFSLPVAAVRRYNIPFQAATHHAVSPYCCILAPSSD
LLTLSSTRQALQVAWNAAWHSGIDNVLEKVHSVAGDSQFHPDLKLSESQISSLRAMHLPA
ALCDCIQAIVTAEGHRSVASALSRLNLYLLFNSLALPHVPTHSCRDILQSLSWQTVLTRF
LQVRPACVEDERLLVGIVTFLNAYFKQIPTERTSDQEDRDLRWILELLLNQETAALLHLL
HGAETQSLDDPEEVTKHVSQRLQRELTNFFNTLMIRLSNTTDRLCLALVGPFKSQLALRL
LQSLRLSDAPRFYGLPSLERALQGMVSLTAQPGWSSHCPDLEPSSLCSKYLSGLLEVISS
FYVEWRGNSLSFMGKGVTRNAIICLLHLSHEMMTENKDKDFITQWSFGNDGTAEEVSGSQ
LGLAWLVPLWVDRDQEVRFASLSLGAALSSMPSGCQALSASCQNISGGLWGTLLNILLDQ
QESSMVRREAAFILQNLLVMPMPANGEEAKDSHWQQPCVHDEVSGVSLVGLPALQALLYH
CQFFHNVALSASTCYRGRYTFNMQPQPLGSHNPSLQESSFSDSDNSLLLLRCEPEPSITS
GRSSSSISTSSTAVSNTASKGSRLNSPKVSSPVSIPDVTPARLMAQGQSDRDTSNSTPSQ
DSQQDEPSGVEAVVVVTPDLLTAQCGLLNNLLAILPDFTLTAIQQNQLLQVLSSLVDIEL
MEKCLTELKTPSILPGTREDIKRQFVTALQFLSSFSKLLRSCVTESKELIGQTDFLKRLS
SNLVAVLMLDMKSLDPGTWDVVCFCWTDVFMLLATLVKRGSSAVHPSVSAALGRRWRTFT
GTLSQCLNEKNAGVLLHTVALQFLSTVFTEETELRGTELRSSTSKHSSTLSNVLNGPAAS
ELCELLLQSFEKRTLQDPLKRLTARALMTLLACSPTAQSYAAKAGLIDSSVEQLKQIHSH
LHLKSIRPGKASHSKKEVGYLKEVKLTAEILRSALYCNNECKVAAMDARLTPTLYALWPW
LLLDDPTMEAVLELLCVYTANCHPACSSLCGSSLSGAPGSKGSSNTSLMNSVMKLTSLAP
DNSPIQNLCFSLLTNLAVSRDCRCALQKNNFLQSFLLVPSHKAGAKATSVGSGGNLLNQW
LRLLVSLSSTEDGQQSILKVTGILELLAELAPHRQHALLTLHNLCFSPANKSHIMANDKA
MKVLLSCLDSKEIETCCIGASALWALLHNNQRAKAALKCPSVRLKIQEALTIFKQDAEKK
QEPLGSHLQKCLDHISQLLNS
NT seq
6726 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgttatccccgcttataaagaaaatgggccactctttagtggaaataagagtt
cgagcgttgaagagcattttaagtaaactgaagcattccctcatcacggtgactgacatt
gttcaggaaaagatgctgtttgtttatctgcttgaatggttcaatttcccggaggtgcca
atgaaggaggacgttcttgggttgcttttaactttatcaaagcatccgagttcagcccag
atgctgagggatgtcggggcggtggactttctctctcagctttcttctacagtcgagccc
agactgcgagctgtcattgatggaaccctggaccagctgttccagcttcctgagctactc
cccagtcattcagctgtctactctcatggatcatgcagcacaactacaacagcctcaact
attgtttcaggtgacaataaattgcctaaaatcggttatttccacgacaggatgcagtca
aactcaaatgcaccacctcagaagatagcagtacgtgaatctgtgagatgtttgaaattt
tcagtttttccctggctgactttaacaaacacggaccgacatatactttcttccaatgag
agttctttgggaagcagcgatcctaacatggtgcggacaacctgtgaactcctttgtgat
gttatcctgcaggactttccagcagaaatcttcctgcaaaggcctggaattgttaagaac
cttttactgctgctcaggctgggttcaggtaaaggagaggtcggctacctccgctcatct
gccctgtcctgcctgcggcagctttgcgtgggactgcagaggaagctgcgctttcatcag
gatccaggtttctactcagcaaagcaggatccgctgtcgcagaactcgtcgttctcttac
gcccaggaggttcgggggaaccggcgttcacaggcctcctctcctgcggctgagctctct
cctcgtccctcagtggtggggcgttcatcccaacgagcccggggagacggtcaggatgga
gatgcagcctctaacagcagctcgcacagaggtggggcaacagtccagggccccgaacag
acgccccgctcccctgctgatgcggctcagctgcagcttccggacctgagcatggaagat
gtactggagcttcagttacagcagctcaacttggcccagttttctgttgccaccatgcag
catgccataccactgctgaagacagacggtttgcatgtgttccaccgtgttctggagctg
ttgtgtgatgctctcctcctgctcagggatagtgtttgcgagctggtctgggacgatcgc
agcctggtggggatggagctgaaggagaagctgcaagcctgtatggagcaacttggggat
atactctatttacatcaaaaccattcagcagatgatcctgacagttcccaggtttaccac
agaatggcctatatagggactgccatattcaccattaaactcctacagaccatcctccct
cctgagaaggccagtgaaaatctcccggaaaacacagcaacggcacttttccacttaagc
gtggactcatcactgggaagtttatttcccagcatgcaggagacggctgtggcctacttg
gagcaagtgaactcagacggccacagcctctacaggaggatgaacagagctgcgctttgg
atggagtccacttgtaacttcataaaggaagcacaagctgatggggagaagaactggttg
gaccttctggaacttgcagaccaaaccatagatgggcttccttttcatcagcacctaccc
atcatcaaggaatgtgttcacatgtgctctcacttgtggaagtttgatcagcccagcccc
ctcctccaatccgagagccagaaactcttcctcaagctgctgtcgcatccctcaccgcct
gtcaaaacggaaacatatgagtgtgctttaaacctggtcaaggactgtcttggcatccag
aatctgtcgagacaggaagcagcagcatgcgagggtgttaacttccttctccaccgcagg
gtcctgtatgaaatgagtgcttttggactgcaagactctgcagaaagggtgaatattgct
gccaaggatatcctgctcttcctcctcaagggacgattaatgatgacagcgccagcctgg
gacagattcaatgaggcactttacccggtcatacccatattacagggctatgccagcact
gaggagtcacttggaaaggctgtcctgctgataagtgacatgtcggatgtgacaagagac
aacgtgttcccgactacaggcaagctgaaagcggcgctccgtctcctcttctctaaacag
cccactgtcagaatagctgcagtgcaacacatcctgccccacctaaccagcagtgctgag
gacaaccccactagaccagacgcagatcaatctctgatgacgtcccttcccaacctcttc
tgcctcagaaaccctgtagacgtcacactggacaccagctataagtccatcctaaaggtg
gaggcagtggagaagctgttttgcatcctgagctcagacactgtagacctgtctatcaga
agatcagcagcagaacaactttctgtggtgctgcaagacacagcagttcactccgtactg
aagaatctaggcatcgcagagaaagttatttctttcatcacagacagtgtaaatggcaac
aagagctttgatcttcttctggagccgtgtgcatgcatcttgagaaagctggtgtacgcc
gattcgtctctgaggcacagcctggcgcaaaacaacctcctgctcctcacactgctcagg
gcatcattgcttttgaaggaaataaaaggcaatggaaccgaaacggccgtcctaatgtgt
ttgctgctttttgatgagatcgccagcatcgagacctggtcagagaaatccaccaaagat
gcctctctctcagcattttctctaccggttgcagcagttaggagatacaacattcccttc
caagcagcgactcatcacgccgtcagcccgtactgctgcatcttggctccttcctctgac
cttctcaccctaagctccacccgccaagccttgcaggtggcctggaatgctgcatggcat
tctgggatagataatgtcctggagaaagtgcacagtgttgctggtgattctcaatttcac
cctgacttgaagctgtcggagtcacagatctcgtcgctcagggcaatgcacctcccagct
gcgctgtgtgactgcatccaagccatcgtgacggcagagggacacagatctgtggcctct
gctctgtccagactcaacctctacttgttgtttaacagtctggctctacctcatgttccc
acccacagctgcagagacatccttcagtccctcagttggcagacagtgttgaccaggttt
ctccaggtgcgtccagcctgtgttgaggatgaaaggttgctggtgggaattgtgacattt
ttgaatgcctacttcaaacaaattcccacagagcgtacctctgaccaggaggaccgcgac
ctgcgctggatactggagctgcttctcaaccaggagactgctgctcttcttcatttgctc
catggtgcggagacacagagcttagacgatcctgaggaggtaacgaaacatgtcagccag
agactgcagagagagctcaccaacttctttaacaccctaatgatcagactgtcaaatacg
actgacaggctatgtttggcattagtgggtccctttaagagccagctggcactgcgcttg
cttcagagcttgcggttgtctgatgccccgcgtttttatggccttcccagcctggagagg
gcactgcagggcatggtcagcctcactgcccagcctggctggagctcccactgccctgac
ctggagcccagctccctctgctccaaatatctcagcggattattagaggtgatctcttcc
ttttacgttgagtggagagggaactccctgtccttcatggggaaaggtgtgaccaggaac
gccattatttgcttgcttcacttgtcccatgagatgatgacggagaacaaggataaggac
ttcataactcagtggtcattcgggaacgatggaactgcagaggaagtcagtggctctcag
ctgggtttggcttggcttgtcccgctttgggtggaccgagatcaagaggtgaggtttgcc
agtttgagtttaggcgccgctctctcctccatgcccagtggctgccaggctctgtctgcc
agctgtcagaacatcagcggaggtctgtggggcacgctgcttaacatccttttggaccaa
caagagagcagcatggttcgcagagaggctgcgtttatcttgcagaacttgctggtgatg
cctatgcctgccaacggagaggaggccaaggactcccactggcagcagccctgtgtccat
gatgaggtatccggtgtgtctttggtgggtcttccagcactgcaggctctgctgtaccac
tgtcagtttttccacaatgtggctctctctgcctcaacttgctaccgtggcaggtacaca
ttcaacatgcagccacagcctttggggagccataatccgagtcttcaggaaagctctttt
tctgattcagacaattctctactgcttttgagatgtgagccagaacctagcatcacctct
ggaagaagttccagctccatttccacttcaagcactgcagtcagcaacacggcaagtaaa
ggttcacggctaaactctcctaaagtttcctccccagtgagcatcccagatgtaactcct
gccagactgatggctcaaggtcagagtgacagagacacaagcaactctactccctctcag
gactcccaacaagacgagccctcaggcgtggaagctgttgtcgtggtaactcctgacctc
ctgacagcccagtgtggcctgctgaacaatctgttggccatactaccagatttcaccctc
actgccatccaacaaaaccagctactgcaggttctgagcagtttagtagatatcgagctc
atggaaaaatgtctgactgagctgaagacacccagcatccttcctggaaccagagaagac
atcaagcgtcagtttgtcactgcactccagttcctatcaagcttttccaaactgctgcga
tcttgtgtcacggagagcaaagagctgattggccagacggacttcctgaagaggctgtcg
tctaatcttgtggctgttctcatgctggacatgaaatcattagacccaggtacgtgggat
gtggtttgcttttgctggacggacgtgtttatgcttctggccactctggtgaagagaggc
agctcggcagttcacccatctgtctccgctgcgctgggcagacgctggcggacattcaca
ggaacgttgtcgcagtgtctgaatgagaaaaatgcaggtgtcctgctccacactgtggct
ctgcagttcctctccacagttttcacagaggagactgagttgcgcggcacagagctcaga
agctcaacatctaagcacagcagcaccttgtcaaatgtcttaaacggtcctgctgccagc
gagctctgtgaactgttattgcagagctttgagaaaaggacccttcaagaccctttaaag
aggctcacagctagggctctgatgacgcttctagcttgcagtccaacagctcaaagctac
gctgccaaagctggtttaattgacagcagtgtggagcagctgaagcagatccactcccac
ctccacctgaagtccatccgacctggaaaagcttctcacagcaaaaaggaagtgggctat
ttaaaagaagtcaagctgactgcagagatcctgcggagtgctctttattgcaacaatgaa
tgcaaagtggctgctatggatgcccgtttaacgccaacactctatgctctatggccttgg
ctcttattggacgaccccacaatggaagcggtgctggagctcctatgcgtctacacagca
aattgccacccagcatgcagctccttgtgtggcagtagcctcagtggggcgccaggatct
aaaggctcttccaacacgtctctgatgaattcagtgatgaagctgacctctcttgcccca
gacaacagccccatccagaatctttgcttctctctacttactaacctggctgtgtcacgg
gactgtaggtgcgccctgcaaaagaataatttccttcagagcttcctgttagtgccttcc
cataaggctggtgccaaggccacatcggtcggtagcggtggaaacctcctgaaccagtgg
ctgaggctcctggtcagcctgtcctccacagaggatgggcagcagagtattctgaaagta
accggaatcctggaactgctagcagaattggcaccacaccggcagcatgcgctgctcacc
cttcacaacctctgcttcagccctgccaacaaatcacacatcatggccaatgataaagcc
atgaaagttttattgtcttgtttggacagtaaagagatagaaacctgctgtataggagct
tctgcactgtgggctttactgcacaacaatcagagggcgaaggctgccctgaaatgtcca
tccgttcgattaaaaatccaggaggccctcaccatcttcaagcaagatgcagagaagaag
caggaacctttgggttcccacctgcagaagtgcctggatcatatttcacagttgctaaac
agttga
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integrated database retrieval system
