Cyprinodon variegatus (sheepshead minnow): 107092506
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Entry
107092506 CDS
T06110
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04137
Mitophagy - animal
cvg04140
Autophagy - animal
cvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107092506
04137 Mitophagy - animal
107092506
04148 Efferocytosis
107092506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107092506
Transcription factors [BR:
cvg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
107092506
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
107092506
NCBI-ProteinID:
XP_015242507
Ensembl:
ENSCVAG00000019687
UniProt:
A0A3Q2GPA2
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MEKEDGVPAVKRSSSEQRKLRSRDAARCRRSQETEVFYELARTLPLPRRVCTHLDKAGIM
RVTLSFLRMQQLLRPEESEKEEETDEDPMDAFFPQALAGFIMVMTEEGDMVFLTENVNKH
IGITQLELLGQSIYDFVHPCDQEELRDLLTPRPGLSKKLMAEQPSERNFFLRMKSTLTSR
GRTVNIKSATWKVLHCTGHIRPFGGSSTSPPTARVMTLLCEPIPHPSSVEFPLDTCTFLT
RHTMDLRFTHCEGRVTQLVGYNPEDLIGRSAYEFYHALDCDRIKKSLHTLLSKGQVNTSR
YRFLANNGGFVWAETQATVLYNNKTSQPEAIVCLNFILSAVEQPDVVFSMEQTRGGLLMK
TEPLSPEHSAEDSGISDTCESDTEPGGERDPSSPGRLFLKLKEKPEELLQLENEAGDAVV
PLTGGLVELSFASPPGPNLVPEHPKDLCSPQLRQLLSPIFDGLNPSSSPPSSEPDLSPCE
EEVMDTSEVEKFFTTCPEETQKKKQAIEDIEGKELEMYAPYISMDDDFQLTFLSDLPDKA
DQSSSLLFEGSNGLPAVTVSRKRSHDLDKETPPQLRIQDKRQKQDLPSIEEELLLSHRLL
GSLEDTDQPDLILDSGRSQLLTDRDPVLGGAPELCDTAALMRDIFIPRPADLSAPLSPMT
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggaggacggggtcccggcggttaaacggagcagctcggagcagaggaagctc
cgctctcgtgacgccgccagatgtcgccgcagtcaggaaaccgaggtgttctacgagctc
gcccgcaccctgccgctgccgcgccgagtctgcactcacctggacaaagctggcatcatg
agggtgaccctcagcttcctgcggatgcagcagctcctgcgacctgaagaaagcgaaaaa
gaggaggagacagatgaagatccgatggacgccttctttcctcaggcgctggcgggcttc
atcatggtgatgaccgaggagggggacatggtctttctgacggaaaacgtcaacaagcac
atcggcatcactcagctggagctgctgggtcagagcatttatgactttgttcatccctgc
gaccaggaggagctccgggacctcctgactccccgtccaggtctgagtaagaaactgatg
gcagaacaaccgagcgagagaaacttcttcctgcgaatgaagagcaccctgaccagcagg
gggcgtactgtcaacatcaaatctgccacctggaaggtcctccactgcacaggccacatc
cgtccattcggtggcagctcaacatcgccccctacagccagagtgatgacgctgctgtgc
gagcccatcccgcacccgtccagcgtggagttccctctggacacctgtaccttcctcact
cgtcacaccatggacctgcgtttcactcactgcgagggcagggtcacacagttagtggga
tacaatcctgaggacctgattggacgctcagcttacgagttttatcacgcactcgactgc
gatcgcatcaagaagagcctgcacaccttgctctctaaaggtcaggtgaacaccagccgc
taccgtttcctggccaacaatggtggctttgtgtgggcggagactcaggcgaccgtcctc
tacaacaacaaaacgtcgcagcccgaagccatcgtctgcctcaacttcatcctcagtgct
gtggagcagccagatgtggttttctccatggagcagacccgcggcggcctcctaatgaaa
accgaaccgctctccccggagcactctgcggaggacagcgggatatcggacacctgcgag
tcggacacggagcccgggggagagagggaccccagcagcccggggaggctcttcctgaag
ctgaaggagaagccggaggagctgctgcagctggagaacgaggcaggagatgctgtggtg
ccgctgactggaggtttggtggagctgtcgttcgccagtcctccgggtccaaacctggtt
ccggagcatcctaaagacctgtgcagccctcagctgaggcagctgctgtcccccattttc
gacggtctgaacccatcctcatctccgccctcttctgaaccagacctgagtccctgtgag
gaggaggtgatggacaccagcgaggtggaaaagttcttcaccacctgcccggaggaaact
cagaagaagaaacaagctatagaggacatcgaaggaaaggagctggagatgtacgcgcct
tacatctccatggacgacgacttccagctgaccttcctcagcgatttacccgataaagcc
gaccaatcctcttcgctgttgtttgaaggctccaatgggcttcctgctgtgaccgttagc
aggaagaggtctcacgacttggacaaggagacgccgcctcagctgaggatccaagacaag
agacagaaacaagatctgccctccatagaagaggagcttctcctcagccacaggctgctg
ggttccttggaagacaccgaccagccggatctgattctggactccggccgcagtcagctg
ctcacagacagggacccggttttgggaggcgcgcctgagctgtgtgacaccgcagctctg
atgagggacatcttcattccccgtcccgccgacctctcggcgccactctctccgatgacc
tga
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