Cyprinodon variegatus (sheepshead minnow): 107092828
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Entry
107092828 CDS
T06110
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1 isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
107092828
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107092828
Ion channels [BR:
cvg04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
107092828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
107092828
NCBI-ProteinID:
XP_015243013
Ensembl:
ENSCVAG00000016232
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
MLAEAHGTDPHGSDSSMRTSSIDNNNKPDSSILISKMEGLVIPYTSEVPCDDYGQRMWWA
FLASSMVTFFGGLFIILLWRTLKYLWTVCCHCNIKNKEAQKVNNPANNPTADKTTKGPDE
KEEAPASEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQ
YFYQDFTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRS
WLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDP
WENFENSQSLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEI
IELIGNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIIFLHNIS
PNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIM
RVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQG
LSTMLANLFSMRSFIEIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPAVCELCYVKLK
LLLIAIEFKSEQRESRSRKRILINPGNHVKLQEGTLGFFIASDAKEVKRAFFYCKACHDD
ITDPKRIKKCGCKRLIYSKMSVYKRMKLACCFDCGRSERDCSCMSGSVHSNMDTLQRAYP
LSSVSVHDCATTLRAFEDEHPSTLSPKKKQRNGGMRNSPNCSPKMMSRHDPLLIPGNEQI
ENMDMNVKRYDSTGMFHWCPSKEIEKVILTRSEASMTVLSGHVVVCIFGDVTSALVGLRN
LVMPLRASNFHYHELKPIVFVGSLDYLRREWETLHNFPKVSILPGTPLSRADLRAVNINL
CDMCVILSANQNNIEDASLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSP
DSSPVHGFVRQASVTTGSNIPIITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFA
ISVLDSLMSATYFNDNILTLIRTLVTGGATPELEGLLAEENALRGGYSTPQTLANRDRCR
VAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLGTPSQCTKRYVITN
PPYEFELVPSDLIFCLMQFDHNAGQSRTSLSHSSHSSHSSSKKSSSVHSVPPSNRQNRSS
KSREAREKQNATRMNRMSQEKKWFTDEPENAYPRNIQIKPMSTHMANQVNQYKSTSSLIP
PIREVEDEC
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgctagccgaggcacatggcacggatccccatggaagcgacagctctatgaggacaagc
agcatcgataacaacaacaaaccggactcttcgatcttaatatccaagatggaaggcctt
gtcatcccttacacctctgaggtgccatgcgacgattatggacagcgcatgtggtgggct
ttcctcgcttcctccatggtgacgtttttcgggggtctcttcatcatcctgctatggaga
accctcaagtatctttggactgtctgctgccactgcaacattaaaaataaggaggctcag
aaggtgaataatcctgccaataatccgacagcagataagacgactaaaggtcctgatgag
aaggaggaagcaccagctagcgaggtgggatggatgacttcggtcaaagactgggccggc
gtcatgatctccgctcagacgctcactgggagggttctggtggtgttagtctttgcactc
agcattggagccctcggaatatacttcatagactcctcagatcctatagaatcctgccag
tacttctaccaagattttacattacaaatcgatatggccttcaacgtattcttccttctc
tactttggcttgcggtttatagcagccaacgacaagctgtggttctggctggaggtgaac
tctgtggtggacttcttcactgttcctccagtgtttgtctctgtctacttaaatagaagc
tggcttggtttaagatttctgagagcgctaagactgattcagttttcagaaatattacag
ttcctaaatattttgaaaacaagcaattccatcaagctggtgaacttgtgttccatcttt
ataagcacatggctcacggcggctggattcatacatttggtggaaaactcaggggatcct
tgggaaaactttgaaaattcccagtcgttatcttattgggaatgtgtctacttgctgatg
gtgactatgtctacagtgggctatggggatgtctatgcaaaaaccaccttggggcgcctg
ttcatggtcttcttcatcctcggtggtttggccatgtttgccagctacgtccctgaaatc
atagagttaataggaaaccgcaagaaatatggtggttcctatagtgcggttaatggaaga
aagcacattgtggtctgtggtcacattactctcgaaagtgtctccaacttcctcaaagac
ttcctacacaaggacagggatgatgtcaatgtagaaattatttttctccataatatttcc
cctaatcttgagctggaagccttgttcaaacgccattttactcaagtagagttctaccag
ggatctgttctcaaccctcatgatttggcccgagtgaagattgagtcagcagatgcttgc
ctaattctggccaacaaatattgtgcagatcctgatgctgaagacgcttctaacatcatg
agggtcatatctatcaagaactaccatcccaagatcagaataataacacagatgctacag
tatcacaataaggcccatctgctgaacattcccagctggaactggaaggaaggtgatgat
gctatatgtctggccgagttgaaggccggcttcattgcccagagctgtctggcccagggc
ctgtcgacaatgctggccaatctcttctccatgagatccttcattgagattgaggaggac
acatggcaaaagtattaccttgaaggagtagctaatgagatgtacactgagtatttgtcc
agtgcctttgtaggcctatcctttccagctgtatgtgagctgtgctatgtgaagttgaag
ctgttgcttattgccattgaattcaagtctgagcagagagagagcagaagccgaaagcgc
atcctcatcaacccaggcaatcacgtcaagctgcaggagggaaccctgggattctttatt
gctagtgatgccaaagaagtaaagcgagcatttttctactgcaaagcttgtcatgatgac
atcacagaccccaaaaggatcaaaaagtgtggctgcaaacgactgatttattccaagatg
tccgtctacaaacgaatgaaactggcatgttgttttgattgcggccgttcagagcgagac
tgctcttgcatgtcaggcagtgtacatagtaacatggacacccttcagagggcctaccca
ctttcctctgtctctgttcatgattgcgcaaccactttacgtgcctttgaggacgagcat
ccttcgactctctcacccaaaaaaaagcagcgcaatggggggatgcgaaactcacccaac
tgctcacccaaaatgatgagtcgacatgaccccctcctaatccctggaaatgaacaaatt
gaaaacatggacatgaacgtgaagaggtatgactcgacagggatgtttcactggtgccct
tccaaagaaatcgagaaagtcatcctgacccgaagcgaagcctccatgactgtgctgagc
ggccatgtagtggtctgtatatttggggatgtcacgtccgctttggtggggctgcgaaac
ctggtgatgcctttaagagccagcaactttcactatcatgaacttaaacctatagtgttt
gtgggctcgctggattaccttcggagagagtgggagactttacacaactttcccaaggtc
tccatcttacctggtacaccattaagtcgggcagatttaagggctgtcaacatcaacctc
tgtgacatgtgcgtaatactgtcagccaatcagaacaatatcgaagatgcctctctgcag
gataaggaatgcatcttggcatcactcaacatcaagtctatgcagtttgatgacagcatc
ggggtcttacaggctaattcccaaggtttcacgcctcctggaatggacaggtcatctcca
gacagcagtccagtacatggctttgtgcgtcaggcttcggtaaccaccggatccaacatc
cccatcatcacagagctagtgaatgactcaaacgttcagttcctggaccaggatgatgat
gacgacccagacacagagctctacctgactcagccctttgcctgcggaaccgcctttgca
atcagtgtactcgactccctaatgagtgcgacatacttcaacgataacattctcacacta
atccggacactagtcactggaggagccacgccagagctcgagggcctgctagctgaggaa
aacgctctcagaggaggctacagcacgccacagacgcttgccaacagagacaggtgtcgc
gttgcccagctggccctgtatgatggcccgtttgctgacttaggggatggtggctgctat
ggcgacctgttctgtaaagccctgaaaacctacaacatgctgtgttttgggatctacaga
ctaagagatgctcacctcggtacaccaagtcagtgcacaaaacgatatgtgatcacaaac
cccccatacgagtttgaactggtgccctcagacctgatcttctgcctaatgcagtttgac
cacaacgccggccagtcaaggacaagcttatcccactcttcccactcctcccattcctcc
agcaaaaagagttcctcggtacactctgtgcccccctccaacaggcagaaccgcagcagt
aagagcagagaggcacgtgaaaaacagaatgcaacaaggatgaatagaatgagccaagaa
aagaaatggtttacagatgaaccggaaaatgcctatccgaggaacattcagatcaagccc
atgagcacacacatggccaaccaagtcaaccaatacaaatccactagtagcctgattcca
ccaatcagagaagttgaagatgaatgctga
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integrated database retrieval system
