Cyprinodon variegatus (sheepshead minnow): 107093479
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Entry
107093479 CDS
T06110
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107093479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107093479
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107093479
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
107093479
NCBI-ProteinID:
XP_015244043
Ensembl:
ENSCVAG00000023435
UniProt:
A0A3Q2FBR6
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
MSAEEADKTATTDASAGDEEEEWLYGDESESKEEDEETKLSASVSAPAETSTDDAAIVDV
HATGNGVASEAPGEATGEDVESDSDSDDDDDDVRVTIGDIKTGAPQYTTYGAPPVNLNIK
TTGSRPYGQVTTKLKGVDLDAPGNINGIPVLEVDMESFEEKPWRKPGADLSDYFNYGFNE
DTWKAYCDKQKRLQKGLEVSTGSSGTSKITVQQGRTGNEKEVSSLAVHTSKADFPSPVSL
YKSVSSQITRKTSGTIDVIGGQLATISRVEGRRRHNLEGNNIQVISEHSTSEAESSAAKI
PTFFPPGPIPPNIPPPPFLPPPPNVSTAPPLIPPPRLPITVPPPGFHPPTSGPPPSLIPT
MDSSHTGGYDGRSVPPYPFPQGAYPPPLAGGVPPPWPPMVDNSKPWDYYSRREDKREKER
DRPRERTHEREREREHSPSTMSYTSDEERYRYREYQERGYAERHRDRASREKEERHRERR
HREKEEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEASEDMGADQENQEAM
E
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggacaaaacagccactactgacgccagcgccggggatgaagag
gaggaatggctgtatggagatgaatcagaaagcaaggaagaggatgaagaaaccaaactg
agtgctagtgtcagtgcacctgctgagacttcaacagatgatgctgccattgttgatgta
cacgccactggaaatggagttgcctctgaggccccaggtgaagctacgggtgaggacgtg
gagagtgacagcgacagtgatgacgacgatgatgatgtccgagttaccattggcgacatt
aaaactggagcaccacagtatacgacatatggagccccacctgttaacctcaacataaag
acaacaggctcaagaccgtatggacaagtgaccacaaaacttaagggcgtggatctggat
gcacctggaaacattaatggcatccctgtgctggaggtggacatggagtcctttgaagag
aaaccctggaggaaaccaggtgctgatttgtccgactacttcaactacggcttcaatgag
gacacctggaaggcttattgtgacaagcagaagaggctgcaaaaggggctggaggtttct
acaggcagctcagggaccagcaagatcactgttcagcagggcagaacaggaaatgaaaag
gaggtatccagtttagctgttcacacatctaaagcagacttcccatcccctgtcagcctg
tacaagtctgtttccagtcagatcaccaggaagacgagtggtacgattgatgtgattggt
ggtcagttggctacaatcagcagggttgaggggcgacgcagacacaacttggagggaaac
aatatccaggtgatctcggagcattcgacgtcagaagctgaatcgtctgcagctaagatt
cctaccttcttccctcctggaccgattcctccaaacatacccccacctcctttcctccct
cccccacccaacgtcagcactgcacctcctctcatacctccacccagattgcccattaca
gtccctcctcctggttttcaccctccaacaagcggccctccaccttctttaattcccaca
atggacagcagccacacaggaggctacgatgggcgctctgtccctccgtacccgtttcct
caaggtgcttacccaccacctttagcaggaggtgtgcctcccccatggccccccatggtg
gacaacagcaaaccctgggactactattcccgccgtgaggacaagagagaaaaagagcga
gacagacccagagagaggacccatgaacgagagcgagagagggagcacagcccctccacc
atgagctacaccagtgatgaggagcgatatcgctaccgcgagtaccaggaacgcggttac
gcagagcgccatcgagatcgggcaagccgagaaaaggaggagagacacagggagaggcgg
caccgcgagaaagaggagggacgtcacaagtcctcccgcagtagcagcagccggaggaga
cacgacagcgaagagggcgacagccacaggaggcacaaacacaagaagagtaaaaggagc
aaagagggcaaagaggctagtgaggatatgggtgcagatcaggagaaccaggaggctatg
gagtaa
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