Cyprinodon variegatus (sheepshead minnow): 107093524
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Entry
107093524 CDS
T06110
Symbol
tnrc6a
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107093524 (tnrc6a)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107093524 (tnrc6a)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107093524 (tnrc6a)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107093524 (tnrc6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
107093524
NCBI-ProteinID:
XP_015244125
Ensembl:
ENSCVAG00000022276
UniProt:
A0A3Q2DHY7
LinkDB
All DBs
Position
Unknown
AA seq
1845 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLEHPGLDSQYEPSPWSSGSPCSSDGNSNWGKVLVDGSSDKSNNT
CSPSSSVWPPSSSSFSCSSSSSGCGSGSDPELASECMDADSSSSVGSEKNLGLAVTTVMM
MSANASSSVSSTASSPSSLTSNIMVGVGVNGDSNSNLCQVGGVGPLSNANEENITGSSHY
SMAGSSSIGSNNMSNHSNKLVGGVVWGSQSGSNINTIAGSNSFLNGGSDPNILNPNANHG
AWPQNPTPNPVCQGQRPSQAQGMTSKLGVVPQQGPLMGWGGMAAPDSGSMMEDAEVNNGT
SSSKVLGGSSSGNGSLQPSNLNTEPNGPNNTIMMMNTTTTTNATMTSSPPDSTASPLLSG
DRPWGSVGGGNGGPPANGNPALAPQNPQGEPGGTGAFGTPWGTATYPVDKGPLNVDTVNP
QISSSAAFKSNNNHNNTGAPRWDQGPTNTPNQPQSNLPWSIGSNQTPGSTGQAPGSGNQT
TMGPPAGIPHPWGSSASSSSSSSSSSTSNSKTSNGEWGSVTTGNNSSDGGVPKGNAANNG
WKSLEDDAMGMGGAGVGGGGQGLGGVTGGWGRSGGSEGSCESSGGRSSSDRDLNQPKGGN
RRKGNHTASIISVLSRADVDPRVLSNTGWGQTPIRQNTAWDVNSPANNQGPKVDERKQSG
GGVNWGTATTAAPSQTSGGWGVGPSSSGPDSGGSGWGEQKQSSGWDSKGGGGWDDGSRYK
GGNSSSNTWSNNVKEDRSMTWTNTPKPQQGWGSNSGNASEGWGNNGDCTRSGVSNHWGEP
QKGAGSVGWDSDSDRSGSGCWSEPSRNTASSSNTWVGSGGSNTPDQSTPNPGSSWGDSVH
KPNSQSSGWGEPGRNHHGAQNWGDSNTKASNEWGKGPDSSISRGNQGSNKSSGWLGGPMP
AVGQKEEASSGWEEPSPESIRRRMEIDDGTAAWGDPGKYSGGAVNMWNRTTQSDQDAMGP
ASQNKPQSAHNSMQPVQHLNQDKTSASGWGEPYSQQKESSSWGEPSAGPPVTVDNGTSAW
GKPMDTSAGWDEPNKDVRESGSGWGNQNKPGPKPMETWGSDVSMGNSWDQEEEVEIGMWS
NNQQDNRSMDQNTWNYKQKGPNKMNKPVNKQDDPWMKPIINQLNSMSFSRDSPDDSMKPG
AGMGTDKRMDMGSMGDYNGVMGKNPGSRHQYHKDLDRSYFDKLSAYDSPASDELSANQSM
SLSPSNSAQPIPCFNSGPSPSHSSSGAALQNVNPMLGGGSVAQGRGGPQSQPPQPNLRNQ
VPPTILPSQVPPSLLKYPGANGGLNPLLGQHVAVLNQLNQLSQLNHLQRLLLQHQQQQKV
QNQRAMPVGRPTEPTRPIGSSPSMMHPPRHLDPSLLKPAPQLKSYHDGYLSQNTPDLQKD
TLGSFSNFPFGLNSNQNVTMDMVVGGGSSSDGGAMNHKEASSSKMSRLWAVDPLEQNSKS
GAMPSGLRLDNSPFYDFLSPGPSPLSPPVQSLGSVGDGWPPRANSPPPHGNTVTWPPEFR
PGEPWKGYPNIDPETDPYVTPGSVINNLSINTVRDTDLLRDRNNGPSSSLNTTMPSNSAW
SSIRASSHSGSLTSTAQSTSARPSESKWSPGGGSVSNSSLAHELWKVPLSPKPLPVAAPS
RPPPGLTSQKPSPASSGWDGSALRLGGWSSSESRYTPGSSWGDSSSSSSRRTQWLFLKNL
TPQIDGSTLRTLCMQHGPLITFHLNLPHGNAVVCYSSKDEAAKAQKSLHMCVLGNTTILA
EFASEEEISRFFAQGQSLATPSSSWQPIGSSQSRMDQSHPFSSRASEPNQWKSGDLHRSS
LWGGPNYSSSLWGSPSSNEPGRVSSPSPIGSFLPVDHLTGAGDSM
NT seq
5538 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggactccgtcagccattcccctaatcaaacaggtttggagcatcct
ggcttggattcgcagtatgagccctccccctggtcctctggctccccgtgcagcagcgac
ggcaacagcaactggggcaaagtcctagttgacggaagctctgacaaatccaataacact
tgttcccccagctcctctgtctggcctccctcctcctcctcattttcttgctcctcatcc
tcctctggctgtggctcagggtcggatccggagttggcatcagaatgcatggatgcggat
tctagctcttctgtgggttcagagaagaacctcggccttgctgtgactacagtgatgatg
atgtcagccaacgcttcttcctccgtctcctctacagcatcttccccctcctctctgaca
tccaacattatggttggtgttggtgtgaatggagacagcaacagcaacctttgtcaggtc
ggaggagtgggacccttaagcaacgcaaacgaagaaaacatcaccggatcctcacactac
tccatggctgggtccagcagtattggcagcaataatatgagtaaccacagcaacaagcta
gttggcggtgttgtatggggctctcagtcaggcagcaacattaacaccatcgctggaagc
aactcttttctaaatggagggtcagacccaaacattttaaacccaaatgccaaccatggt
gcctggccacagaatccaaccccaaacccggtgtgccagggccagaggccttcacaggct
caggggatgacttccaaattgggtgtggttcctcaacaggggcccttaatgggctggggt
ggcatggcagctccagacagcggcagtatgatggaagacgctgaggtgaataatggtaca
tcgagcagcaaggtgttaggaggcagcagcagtggaaatggtagcctgcagcctagcaac
cttaacactgaacccaatggaccaaataacactatcatgatgatgaatactactactact
actaatgccacaatgacctctagcccaccagactctaccgcctcaccccttctcagcgga
gatcgtccctggggttccgttggaggaggaaatggggggccaccagccaatggaaacccc
gcattagctccccagaaccctcaaggtgaacctgggggtactggggcttttggtacccct
tggggcacagctacctaccctgtagacaaaggccccttaaatgtagacactgtgaacccc
cagatctcctcttctgctgcttttaagagtaataataaccacaataacactggggccccc
cggtgggaccaggggcccactaataccccaaaccagcctcaaagtaacttgccctggagt
attggctctaatcaaaccccaggctctacaggccaagcaccaggaagcggaaaccaaact
actatgggccctccagcagggattcctcacccctgggggagcagtgcatcctcttcttcc
tcgtcgtcgtcttcttccacctcgaacagcaagacgtcaaatggagaatggggatcggta
actactggtaacaacagttcagatggaggagttccaaaaggaaacgctgccaacaacggg
tggaaaagtcttgaggatgatgccatgggcatgggaggagctggggttggcggtggaggt
cagggcctcggaggggtcactggaggctggggtcgctctggaggaagtgaaggaagctgc
gaaagctccggaggtcgatccagctccgacagagacctcaatcagcctaaaggtggaaac
cgcaggaaagggaaccacaccgcctcgataatatcagttttaagccgagccgacgtagac
ccgagggtcctttccaacactggatggggacaaacacccatacggcagaacaccgcttgg
gacgtcaattctcctgcgaacaatcagggtcctaaagtggatgaaaggaagcaaagcggg
ggaggggtaaactggggcacagcaacaacggcagctccctcccagacctctggaggttgg
ggggttgggccaagcagctcaggccctgacagtggaggatctggctggggagaacagaaa
cagtcgtcaggttgggacagtaaaggaggaggtggctgggacgatggatcccgttacaag
ggtgggaacagcagcagcaacacctggagcaacaatgtaaaagaggacaggtcaatgaca
tggactaatacacctaaaccgcagcagggctggggttccaatagtggaaatgctagtgaa
ggatggggcaacaatggtgactgcaccagatcaggagtcagcaaccactggggggaacct
cagaagggtgcgggctcagtgggctgggacagcgacagtgaccgctcaggttctggatgt
tggagcgagccaagccgaaacaccgccagcagcagcaacacctgggtaggcagtggaggg
tcaaatactcccgatcagagcactccaaaccctggctccagctggggagactctgtccac
aaacccaactcgcaaagcagcggctggggtgagccagggaggaaccatcatggagctcag
aactggggcgactccaacactaaggcttctaatgaatggggcaaaggtcctgactccagc
atatcccgaggaaatcaaggatccaacaaatcctcagggtggcttggaggcccaatgcct
gctgtcggtcagaaggaggaagcttcatctgggtgggaggagccttctcctgagtctatc
cgtcggaggatggaaatcgatgatgggactgcagcttggggagatcctggtaaatacagc
ggaggcgctgtgaatatgtggaacaggaccactcagtccgatcaggatgccatgggcccg
gcctcccagaataaaccccagtcagcacataactccatgcagcctgtgcaacatctcaac
caagacaaaacctctgcctcaggttggggtgagccctactcccagcagaaggagtcttca
tcatggggggagccttcagctgggccccctgtgaccgtagataatggaacatctgcctgg
gggaagcctatggacaccagcgccggctgggatgaacccaacaaggatgtgagagagtct
gggtcaggatggggcaatcagaataagcctggtcctaagcccatggagacatgggggagt
gacgtgtccatgggcaatagctgggatcaggaggaggaggtagagatcgggatgtggagc
aacaaccaacaggacaacaggtctatggatcagaacacctggaactacaagcagaaaggt
cccaataagatgaacaaaccggtgaacaaacaggacgacccttggatgaaacccatcatc
aaccaattaaacagcatgtccttctctagagactcccctgatgactccatgaagccagga
gctggcatggggacagacaaacggatggacatgggcagtatgggagactacaatggagtc
atggggaagaacccaggttctcgacaccagtaccacaaagacttggatcgttcttacttt
gacaagctttctgcttatgatagccctgcttctgatgagctctccgccaatcaaagcatg
agtctttcccctagcaattctgctcagcctatcccctgtttcaactctgggccatcccct
tcccactctagttctggggctgctctgcagaatgtaaacccaatgttgggtggcggcagc
gtagcacaggggcgaggaggcccccagtcccaaccacctcagcccaaccttcgcaaccaa
gtgcctccaaccatcctgccctctcaggtccctccatctctgttgaaatacccaggagct
aatggtggtttgaaccctctgttgggtcagcatgtggctgtactcaaccagctcaatcag
ttgtcacagctcaaccacttgcagcgtcttctcctgcagcatcagcaacagcaaaaggtt
cagaaccagagagccatgcctgtgggacgtccgactgaaccgacacgtcctattggttcg
tctccatcgatgatgcacccaccgcggcacctggatccctcccttctgaagccggccccg
caactcaaatcttaccatgatggctacttgtcccagaatacccctgacctacagaaggac
accttaggatccttcagcaacttcccctttggcttaaactctaaccagaatgtaaccatg
gacatggtcgttgggggtggaagtagcagtgatggaggagctatgaaccacaaagaggca
tccagttccaaaatgagcagactctgggctgttgacccccttgagcagaacagcaaatct
ggtgctatgccgtctggactccgtctggacaactctcccttctatgatttcctgtcgcct
ggcccatctcccctgagtcctcctgttcaatcattgggctctgtgggtgatggctggcct
ccccgtgccaattccccccctccccatggaaatactgtcacttggcccccagagttccgg
cctggggagccttggaaaggttaccccaacattgaccctgagacggacccttatgtgact
cctggtagtgtcatcaacaacctctccatcaacaccgtccgtgacacagacctcctcagg
gacaggaacaatgggccatcctcatcactgaacaccacgatgccttctaacagtgcctgg
tcatccattcgtgcctccagccacagcggttccctcaccagtacagcacaaagcacttca
gctagacccagtgaatcaaagtggtctcctggcggcggttctgtgtccaactcctcttta
gcccacgagctttggaaggtccccctgtctcctaagccgctgccagtagcagcaccctcc
agaccacctcctggcctcactagccagaagcccagccctgcctcctctggctgggatggc
tctgccctgaggcttggaggttggagctcctctgagtccagatacacacctggctccagt
tggggtgacagcagcagcagcagctcaaggagaacccaatggctttttctgaaaaatctc
acacctcagattgacggatctacgctgaggactctgtgcatgcagcatggccctcttatc
acattccacctcaacctgccacatggtaatgccgtggtttgctacagctcaaaggatgaa
gccgccaaggcccagaagagcctgcacatgtgtgttttggggaacactactatactggcc
gagttcgccagcgaggaggaaattagccgcttctttgcacaagggcagtcattggccact
ccctcctccagctggcagcccattggttcttctcaaagcagaatggatcagtctcacccc
ttttccagccgcgcctctgaaccgaaccagtggaagagcggcgacctgcacagatcctct
ctctggggtgggcccaactattccagtagtctgtgggggagccccagcagcaatgagccg
gggagggtcagcagcccctctccaatcggctccttcctcccagtggatcacctgacaggg
gccggggactccatgtga
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integrated database retrieval system
