Cyprinodon variegatus (sheepshead minnow): 107093562
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Entry
107093562 CDS
T06110
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like
KO
K23619
collagen type XXVIII alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cvg01002
]
107093562
Peptidases and inhibitors [BR:
cvg01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
107093562
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
107093562
NCBI-ProteinID:
XP_015244185
LinkDB
All DBs
Position
Unknown
AA seq
1227 aa
AA seq
DB search
MLPRFTSVLLFSLLSSILAQDSIEERRTYKKSRARPVAAGIHDGQAILDEDCGLELSFLL
DSSESAKDNHEQEKRFAMDMVDRLQGARLPTGRSLSSRVALLQYSSHVIKEQTLRDWRGS
ENFKNRITPIVYIGHGTYTTYAITNITQIYQEESRPGSIKVVVLFTDGVSHPRNPDIFST
VADAKNQGIKFFALGITRTANEPANVAKLRLLASSPASRFLHNLQDEDLVEKIFTELTAI
ADEGCPLPQRCACEKGERGPSGPAGKKGRPGDDGAPGQKGQKGEAGLSGIPGREGAEGKP
GYKGDKGERGECGTPGIKGDRGPEGSVGIRGPRGLQGLPGPQGDIGPEGPPGNQGERGLP
GPPGIQGEIGIGLPGPKGDMGFQGRPGPPGPHGVGEPGPPGPQGQQGVPGEKGPQGEGLP
GPKGERGLPGPRGPRGQQGVGIKGDKGELGPLGLPGPAGPTGVGIQGEKGVEGPRGPPGV
RGVPGEGLPGPKGDQGLPGEHGAPGERGIGEPGPKGEPGASGLSGVPGLPGEDGAPGQKG
EPGLPGSRGPEGAQGIGIQGEKGDQGLRGIRGLHGPPGIPGPSGPKGERGIPGPQGMSGQ
PGRSISGPKGEVGPAGPPGPIGETGLGLPGPKGDRGLTGLPGPIGPKGEGFPGPVGPPGM
PGLPGEPGQEGVGIPGPKGDIGFRGLPGLPGPPGEGLLGPPGNTGRPGPPGPVGPPGVGI
QGPKGEPGSQGMTGPRGPQGEGFPGPKGDRGSQGERGMKGTKGDMGDTGVPGEMGRSGAK
GEPGLTREDVIRLIKEICGCGIKCKERPMELVFVIDSSESVGPENFEIIKDFVIRLVDRT
TVGRNATRIGLVLYSLDVNLEFNLARFLTKEDVKEAIRKMTYMGEGTYTGTAIRKATQEA
FFSSRFGVQKVAIVITDGQTDSREPVKLDIAVREAHAANIEMYALGIVNSSDPTQAEFLR
ELNLIASDPDSEHMYLIDDFNTLPAMESKLVSKFCEDENGALIYNHIPNGQWNSINGLGL
NRINGRYVNGYNSFESNGFDNTGNGKKHEGENENQRETNKRARGDAFTLPINSDPLPLQV
VEEDEDGEDLELRSSVQTGSSTPAINETTSSVVRDSSSPRDEGFSSSTISELPGTLSSWS
RQQTSSYTNQSQPVMSQELPKEVPAPDPRCSLILDQGTCRNYVICWYYDKQANSCAQFWY
GGCGGNENRYETEDECKTACVLLRTAG
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgctgccccgttttacgtcagtgctgctgttttccttgctgtccagcattttggctcaa
gactctattgaggaaaggagaacttacaagaaatccagagccaggccggtagctgcaggt
attcatgatggacaagccatcctggatgaagactgcggcctggagctctccttcctgttg
gacagttctgagagcgcaaaagacaaccatgagcaggaaaagcgttttgcaatggacatg
gtggacagactccaaggtgcacggctgccaaccggccgcagcctgagttccagggtggcc
ttgctccagtacagcagtcatgttatcaaggagcaaactctcagagactggaggggatca
gaaaactttaagaaccggatcacccccatagtctacattggacatggcacctacacaacc
tacgcaatcaccaacatcacccagatctaccaggaggaatccagaccaggcagtatcaaa
gtagtggtgttgttcacagatggtgtttcccatccaagaaacccagacattttctccact
gtcgctgacgctaagaaccaaggcataaagttcttcgctctgggcatcacccggacagcc
aacgaaccagccaacgtggccaaactccgcctgctggcaagctctccggcctcccgcttc
ctccacaatctgcaggatgaagacctagtagaaaaaatcttcactgagttaactgctata
gctgatgaaggatgtcctttgcctcagagatgcgcctgtgagaaaggagaaaggggaccc
agcgggcctgcaggtaagaaaggtcgccccggtgatgacggagctccagggcagaaaggg
caaaagggggaagcaggattaagtggaatacctgggcgagagggagctgaggggaagcct
ggttacaaaggagataagggtgagaggggtgagtgcggcactccgggaatcaaaggagac
aggggtccagaaggttcagttggaatcagaggaccaagaggtctgcaggggctaccaggg
ccacagggagatattggaccagaggggcctccggggaaccagggagaacgtggcctacct
ggccctccaggaattcagggagaaattggtatcggactccctggtccaaagggcgatatg
ggattccagggccgcccaggtcctcctggtcctcatggagtgggtgaacctggcccacct
ggacctcaaggacagcaaggtgttccaggggaaaaagggccccaaggagaaggacttcct
ggaccaaagggggagcgggggctcccaggaccaagggggccaaggggacagcagggtgta
ggcatcaaaggagacaagggtgaattagggccactgggtcttcccggtccagctgggcca
actggggtgggaattcagggagaaaagggagtggagggaccaagaggtccaccaggagtc
aggggagtcccaggagaaggattacctggacctaagggtgaccaaggcttaccaggagaa
catggagctcctggagaaaggggcatcggtgaacctggcccaaagggagaacctggagct
tcaggactaagcggtgtgcctggtcttccaggagaagatggcgctccaggccagaagggg
gagcctggcttacctggctccagaggtcctgagggagcacaaggaattggaattcaagga
gagaagggtgaccagggtctgagagggatccgtggactgcatggtccccctgggattcca
ggaccttctgggccaaagggagaacgtggaattccaggtccgcagggcatgtcagggcag
ccaggacggtccatatcaggtccaaagggtgaagttggtcccgctggtcctcctggtcct
attggtgaaacaggtcttggtctacctggaccaaaaggtgaccgaggtcttacaggttta
ccaggtccaattggtccaaagggtgaaggctttcctggccctgtgggtcctccaggaatg
ccagggttaccaggggagcctgggcaagagggagtgggaattcctggtccaaagggtgat
attggctttagaggactgccaggtttacccggaccaccaggcgagggcttactgggcccg
ccaggcaatactggaaggccagggccgcctggtccagttggacctcctggagtaggcatt
caagggccaaagggcgagccaggatctcaaggaatgactggacctagagggccgcaagga
gagggctttcctggacctaagggggaccgcggttcacagggtgaaaggggcatgaaaggc
accaaaggagacatgggtgataccggggttcctggagaaatgggtagatcaggagccaag
ggtgaaccaggacttacaagagaagacgtaattaggctgatcaaagaaatatgcggatgt
ggcatcaagtgcaaagaaagaccaatggagcttgtgtttgtcatcgacagctcagagagt
gtcggtcctgagaactttgagatcatcaaagactttgtcatcaggttggtggacagaacc
acagttggacgcaatgccaccaggatcggactggttctctacagtctggatgttaactta
gaattcaacctggcacgttttttgaccaaggaggacgtaaaggaagcaatacggaaaatg
acatacatgggagaaggcacctacacaggtactgctataaggaaggcaactcaggaggcc
ttcttcagctcccggtttggagttcaaaaagttgccattgtcatcactgacggtcagaca
gacagccgagaacctgtcaagcttgatatagcagtgcgggaggctcatgcagcaaacata
gagatgtatgctctaggaatcgttaattcctctgatcccacacaggctgagttcctgcga
gaacttaacctcatagcttctgacccagacagtgagcacatgtaccttattgatgacttc
aatactctcccagcaatggagtctaaacttgtgagcaagttctgtgaagatgaaaatggt
gccctcatttataatcacatcccaaatggacaatggaacagcatcaacggacttggtctt
aataggatcaatggaaggtatgttaatggatacaatagctttgaaagtaatggttttgac
aacactggaaatgggaaaaagcatgaaggggaaaatgaaaaccagagagaaaccaacaaa
agagcccggggtgatgcattcacactacccatcaattccgatccccttcctttacaggta
gtagaagaggatgaggatggagaagatttagaactgaggtccagtgtgcagactggtagt
agcacgccagcgatcaatgaaactacatcatcagttgtaagagacagttcgtcccccagg
gatgaagggttttcctcatcaacaatatctgaattaccaggaactttatcatcttggtca
agacaacaaacatcttcatacaccaaccagtcgcagcctgtaatgagtcaagaattacct
aaagaggttcccgctcctgatccacgctgtagtctcattttggaccaaggaacctgcagg
aactacgtaatctgctggtattacgacaaacaggccaactcctgtgcacagttctggtac
ggaggctgtggtgggaatgaaaaccgctatgaaactgaagatgaatgcaagacagcttgt
gttcttttaagaacagctggatga
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