Cyprinodon variegatus (sheepshead minnow): 107093745
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Entry
107093745 CDS
T06110
Symbol
ptbp1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107093745 (ptbp1)
03041 Spliceosome [BR:
cvg03041
]
107093745 (ptbp1)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
107093745 (ptbp1)
Spliceosome [BR:
cvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107093745 (ptbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
107093745
NCBI-ProteinID:
XP_015244477
Ensembl:
ENSCVAG00000014539
UniProt:
A0A3Q2GK02
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MDGRLDATELYPLGSGYVPEIDSVHDISVGTKRGSDELFSSCISNGPYIMNSANGNDSKK
FKGDVRSPGVPSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLELNSEEC
AQTMVSYYSSVTPVIRNQPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMASMA
IPTDASSMAGGVAQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALI
QYADAMTAQHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSH
PSLDHQTMAAAAFSAPGIISASPFGGAHGFPPTFAIQQAGLSVPGIPSALASLGMGHTGM
AAAAAAAASRLGLSGLGATGGHNVLLVSNLNPETVTPHCLFILFGVYGDVMRVKILFNKK
ENALVQMSDGTQAQLAMSHLNGQRLHGRAMRVTLSKHTTVQLPREGHEDQGLTKDYSNSP
LHRFKKPGSKNYSNIFPPSATLHLSNIPPSVMEDDLKRLFASSGATVKAFKFFQKDRKMA
LIQMGSVEEAIECLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgtttagacgccactgagttgtaccctctgggatccggctacgtccctgaa
attgacagtgtccatgacatatcagttggcacaaagaggggatctgacgaactcttttct
tcctgcatatccaacggaccctatatcatgaactcagccaatggcaacgacagcaaaaaa
ttcaaaggagatgtccgcagtcctggtgtcccatcacgtgtggtccacgtacgcaaactg
cccaatgacatcaacgaggctgaggttataagcctgggactgccctttgggaaggtcact
aatctgctgatgttgaaagggaaaaatcaggcctttctggagcttaacagtgaagagtgt
gcacagacgatggtgagctactattcttctgtcactcctgtcatcagaaaccaacccatt
tacatgcagtactcgactcataaggagctcaagacagacaactctcctaaccaagtgcgt
gcccaggcagctctgcaggcagtcaacgccctgcatggaggtggaatggcgagtatggcc
atccctacagatgcaagcagtatggcaggaggcgtagcccaaagccctgttctcagagtc
attgtggaaaaccttttctaccccgtcaccctggatgtcctgcatcagattttttccaag
tttggaactgtgctcaagatcatcacttttaccaagaacaaccagttccaggcattgatc
cagtatgctgatgccatgacagctcagcatgctaaactgtctctagatggccagaacatc
tacaatgcttgctgtaccctgagaatcagcttctccaagctgacaagcctcaatgtcaag
tacaacaatgacaaaagcagggactacacccgccctgaccttcctacagcagattcacac
ccctcactcgaccaccagacaatggcagctgcagccttctctgcaccgggtataatctct
gcttctccctttggtggagctcatggcttccccccaacgtttgctatccagcaggctggt
ctgtcagttcctggcattcccagtgccttagcatccctgggtatgggtcataccggcatg
gcagccgctgcagcggccgcagctagccggcttggcctgtcggggctcggtgccactggg
gggcacaacgtgctgttggtcagcaatctgaaccctgagaccgttacgccacactgcctc
tttattcttttcggcgtgtatggtgatgtcatgagagtgaagatcctgttcaataaaaag
gagaacgctctagtccagatgtctgatggcacacaggctcagctagccatgagccacctg
aatggccagcgccttcatggcagggccatgcgcgtgacgttgtcgaagcatacgacagtc
cagctgcccagagaaggccatgaggaccagggtcttaccaaggattacagcaactcccca
cttcatcgcttcaagaagcctggctccaaaaactactctaacatcttccctccatctgca
acactccacctctccaacataccaccttcagtgatggaggatgatctcaaaagactcttt
gcaagctcaggagccacagtcaaagccttcaagttctttcaaaaggaccgcaagatggcc
ctgatccagatgggctccgtggaggaggcgatcgagtgcctcatcgagttccacaaccat
gacctaggagagaaccatcaccttcgagtgtccttctcaaagtccaccatctga
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