Cyprinodon variegatus (sheepshead minnow): 107094005
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Entry
107094005 CDS
T06110
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107094005 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Kunitz_BPTI
Pur_ac_phosph_N
DUF4992
Fn3_Dep-1_2nd
Motif
Other DBs
NCBI-GeneID:
107094005
NCBI-ProteinID:
XP_015244883
LinkDB
All DBs
Position
Unknown
AA seq
2969 aa
AA seq
DB search
MKMWNWVFTVGVLLSSIKLAEAQGRCNNLQAADIVFLIDGSSSIGRANFIQVKNFMADIV
KPFASSVSESGVRVGAVQYSDTSRVEFNFNTHLTGTDVVNAVQNINYKGGNTRTGAGLKY
VSDNFFNPTSTRDVPKVTILITDGKSQDQVEEPAQKLRSQGVNIFAVGIKSADRSELAQV
SSKPSSDFTTFVGDFKLLNTLLPLVSPKVCSAAGGVYASDEAFSGPSDLQFTGQTTDSLR
FRWSPAGGPVSGYAIQYVPLSGLGQPIVAELREERLSASQRTFTARELKSGTDYLVTVIA
QYPNSVGESVSAKQRTRSLPGVSSLRLVQAGFFSLSIEWDKPSSSLQGYRLTYGPRGQPA
AQLLEQSLSADTTSITLESLQPDTEYVINLYPLFSRNGASPSVLNARTLVLEAVQQLTVE
TMSESSIRVNWRRVTGARAYRLVWGPFTGRTVETVEVAGDTELYTLSSLQPDTEYIVTII
PLYEGNTEGPRATARFKIERQEQQVLTAATTGPSSIRLNWRVIRAARGYRLEWREGEGSP
IQSLSFPQSSTNYELTGLQPNTEYIFTLYTLYEGREEATPVSTEDREKQPVGSVSNLRVV
ESLGSTVRIGWTGVAGATQYRIVILNTEDETETIQVIPGNQRILDLSDLTVGVSYGVSVT
ALVGVNEGKTVTVYIKPEPAAGRVTNLRITNVNSRRIRIVWQGVTGATGYRVTWRQGNNA
EQSRLLGPEPTLFTIDGLQPDEALVIGVAPIVNQRVGEAVTLSARTNPSSGALSGLRITE
ISSQSIRIAWSPFSRATGYKITWSREDGTETTRTIGADVSSYIIDGLRPNSAYTVQVSTL
VGSREGTPAILRVRTESESLVGTVTSLQVQETRGEVVRVSWVGVQGATAYRVTWRRIDDG
VEQSQLVSRDVTSLDLDQLDPGVQYEVQVVALVENREGAPVSVRVTTPGYVTPPSPLPNT
TLRATEVTQDSVRLSWALLPGATGYILRWKEETDVGRGLSVTLPALSSSYLVTGLRLGRR
YRFTIQPTFVGGVSAETFVDERTVCLGGRLDVVFLVPASTDRADLARPLRDLVTSAAGSL
AAIGPQDSQVGVVVYSFRPKSWFLLSRHSRSDTLLQEIQSTPFDESPGNNIGEAVRFTRQ
YMLTPTAGRRPRVPGAIVIIADRKSVDNLTLAVSSLRDAGVTVLAVGIDQADREELRLAV
TDRNPQNILYASTAERLNTLHADLADLLCGIARIPEVIPGPEQCTVQCPQGEKGDRGQKG
ERGRDGTDGRKGEPGRDGLPGREGPRGPEGRPGTPGRPIPINPSQVIKGEKGERGFPGVD
GNPGLPGRPGAAGNAGVPGSQGLPGVRGSTGEPGGQGTPGPKGDKGERGEPGSVVSSLPG
RKGEPGVPGIPGTPGRPGIEGAKGAPGVPGTRGQDGRPGIPGTPGLSIKGDKGSQGERGP
PGIGSGVAVKGEKGSPGIPGAAGVLGPRGPAGPQGSKGDKGDDGTGLPGPQGKQGEPGDR
GPRGPAGEIGSKGDRGQPGEPGTRGDRGERGPVGETGEKGDQGKAGIPGTPGLRGLPGPS
GPAGEKGNEGARGEPGRSMPGLQGRKGEQGERGLPGSDGLKGDRGEPGQRGEKGSPGSGG
SGVVGPKGEPGEPGRPGLNGRPGAKGDPGEPGERGENGRPGIPGKPGLGGKPGEKGDKGD
EGTPGESGLPGKPGERGLRGLAGQPGRPGEKGDMGDPGEHGRNGSPGPAGPRGEKGEQGL
QGPAGPPGQIAELQGQLKGERGEKGDAGDPGEHGGKGQKGEAGTPGAPGLRGPEGLRGPA
GIKGDTGERGSPGEKGERGASGLDGRPGLDGKPGSPGPPGLRGDPGKQGDAGRDGLPGLR
GEQGPRGPAGPPGNPGIPGKAGEDGKPGPQGKMGEDGVPGEDGRKGDKGEDGAAGRDGRD
GQKGDRGPAGPPGPSGPQGPAGLPGSIGPPGQVVYVKGAEAAPIPGPQGPPGTPGVPGIP
GAMGARGERGPAGPKGDAGDPGEDGAPGKPGTAVDVQKALTGLGILVSDLKVLVDRKDTI
LSPAVPKVERGEKGDRGEPGSRGPSGADGPRGFQGDRGPKGEQGERGPIGQTGPPGRAIV
ERGPEGPQGPAGEPGKPGIPGVPGRAGELGEAGRPGEKGDRGDKGDKGEAGLIGLPGPAG
PPGQKGDSILPGVPGLRGPPGLKGEPGSSGPLGPKGERGYVGPRGEKGDRGEPGEKGREG
SMGIPGEPGKPGQEGKPGLPGFPGVLGRPGNPGEPGMRGPTGPMGPTGMPGPPGIKGNQG
EAGIGIQGPPGAQGSTGRPGPAGPPGAVGPQGPPGLTGQVGEAGKPGVPGRDGVPGKEGL
PGLPGKQGISGPPGLPGIKGEQGDSGPPGKAVNGAPGPKGDRGPPGVTLPGTVGERGLAG
EKGTKGEKGPAGIKGATGMAGEPGEPGEDGAPGPPGPKGDKGERGVGQTGPSGRIGPPGL
KGDPGLPGPAGPPGPQGKAGDPGLPGVRGESGQPGPPGPPGERGLQGFAGRPGNTGPPGP
PGPAGQAGKTGEPGERGSTGFPGARGPGGQKGEAGDPGVPGESGLPGKDGLLGRKGEKGE
VGISGLRGIKGDRGPKGACGADGPKGEKGDSGIHGRSGLPGRKGEQGDIGPAGAPGIPGK
EGLIGPKGDRGFDGADGPKGAQGEKGERGASGIPGPPGPRGLDGPPGLTGPQGPAGAKGP
EGLQGQKGERGPIGPAMVGPRGIPGIPGERGEQGDMGPDGAKGDRGEPGMTEDEIREYVR
TEMKQHCACGGSSPDTLSQPAFRARPTTEQELVLNGEKGRELRVVVNTNDPEYEHIYSIE
ALDEPTDDLLYFSTESANHTEGEDLKTVLEKSAKVDPNKSSTAAFTGKTSEKSQKKGKAP
PLTRENSGSVRPKRSLQEEGLTDLCLLPMDEGSCQRYTLRWYFNSQVQACRPFIYSGCKG
NNNRFLHQEECEEACLRKNKDIQPLEIPR
NT seq
8910 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgtggaactgggttttcactgtgggtgtcctgctgtcttccatcaaacttgct
gaagctcagggtaggtgtaataatctgcaggcagcagacattgtgttcctgatcgatggc
tcttccagtattggacgcgcaaacttcattcaggtgaaaaactttatggctgatattgtg
aagccttttgccagttctgtcagcgagtcaggggtccgggttggagctgtacaatacagt
gatacatcaagggtggagttcaactttaatacacacctaacaggcaccgatgttgtcaat
gccgtgcaaaatataaattataaaggtggaaacacaaggactggagctggtctaaagtat
gtttctgataacttcttcaaccctacctccacccgagatgtcccaaaggtcaccattctg
atcacagatgggaaatcacaagaccaagtagaggaaccagctcagaagctacgtagtcag
ggagttaacatttttgcagttggtatcaagagtgcagacaggagtgaacttgctcaggtt
tcctcaaagcccagcagtgatttcactacgtttgtaggagactttaagctgctgaatact
ctccttcctcttgtgagcccaaaagtgtgctcagctgcagggggagtgtatgcaagtgat
gaggccttttcaggtccatctgatcttcagttcactggtcaaacaactgattctctccga
tttcgatggagtcctgcagggggccctgtgagcggctatgccatccagtatgtgcccctc
tctggtctgggtcagccaattgttgcagaattaagagaggaaaggctctctgccagtcag
aggacgttcactgcacgagagctcaagtcaggaacagattacctggtgactgtcatcgcc
cagtaccccaacagtgttggagagtctgtttctgcaaagcagcgaaccagatcattacca
ggagtctccagcctacgtttggtgcaggccgggttcttctccctctctattgaatgggat
aaaccatcatcttcgctgcagggctataggctcacctatgggccacgaggacaaccagcg
gctcaattgttggagcagtcgctgtctgcagataccacctctatcacgttggagtctctt
cagcctgacacagagtatgtcatcaacctttaccctctgttctccagaaacggtgcttcc
ccatctgtcctcaatgctcgaacattggtcctggaggcagtgcagcagttaacagttgag
actatgtcagaaagcagtattcgtgtgaactggagacgagtcactggtgcacgagcatac
cgtttggtatggggaccatttacaggtcgcactgtggagactgtggaagtggcaggtgac
actgagctctatactttgtctagcctgcagcctgatacagagtacattgtcaccattatc
ccactgtatgagggcaacactgaggggcccagagctacagccagattcaagatagaacgt
caagaacagcaggtcctcacagcagcaaccacaggaccatcctcaatccgcctaaactgg
agagtgatccgggctgctagaggctatcgcctggagtggagggagggagaaggaagtcct
atccagagcctgtcctttcctcaaagctccaccaactatgagctaacagggctccaacca
aatacagagtacatcttcacgctatacacgctgtatgagggccgtgaagaggccacacct
gtgtccactgaagacagagagaagcagccagtaggaagtgtgtccaacctgagagtggtg
gagtcccttgggagcacagtccgcattgggtggacgggtgtggcaggggccacacagtac
cggattgttatcttgaacactgaggatgaaacagagacaatccaggttattcctggaaac
cagaggatcctcgacttaagcgatctgacagtgggcgtttcatacggtgttagcgtcacc
gcattggtaggagttaatgaaggaaagacagttactgtctacatcaaaccagagccagct
gcagggagagtgaccaatctcagaataacaaatgtaaacagtcggagaatccgcattgtc
tggcaaggtgttactggtgcaacaggttatagagttacctggagacaaggcaacaatgca
gaacaatctcgtcttctgggaccggagcctacccttttcactattgatggcctgcaacca
gatgaggctcttgtaattggtgtcgcccctattgttaatcaacgtgttggtgaagccgtc
actctgtctgcaagaacaaatccctctagtggagcattgtctgggcttcgcattactgaa
atctcatcacagagtatacgaattgcatggtcacccttttctcgggctactggatataag
atcacttggagccgtgaagatggaactgaaacaacacgaaccataggtgcagatgtctct
tcctacatcatagatggacttcggcctaactcagcgtacactgtacaggtttctactctt
gttggctctcgggaaggaactccagctattctcagggttagaacagaatcagaatcgttg
gtgggaacagtaacatcgcttcaagtacaggaaacccgaggggaagtggtccgagtttcc
tgggttggggtccagggagcaacagcctaccgcgtcacttggaggagaattgatgatggg
gtagaacaaagccagctggtgagtagagatgtgacatctctggatttggaccaacttgat
cccggcgttcagtatgaggttcaggtcgtcgctttagtagaaaacagagaaggcgcgcct
gtttctgtcagagtcaccacacctggttatgtcaccccaccttcgccactaccaaacacc
actttacgagccacagaggttactcaggattccgtgcggctgagctgggctctccttcct
ggtgccacaggatacattcttcgatggaaagaggagacagatgtgggtaggggactgtct
gtcacgctgcctgcattgtccagctcgtacctggtgaccgggctgcgtttgggccgcaga
tacagattcaccatccagcctacttttgtaggcggagtttcagccgagacttttgtagat
gaacgcacagtgtgtctgggtggacgtcttgatgtggtgtttctggtgcctgcatccact
gatcgggctgacctggctagaccgctgagggaccttgttaccagtgcggcagggtcactt
gctgctattgggcctcaagactctcaggtaggggtggttgtatacagttttagacccaaa
agctggttcctgctcagtcgtcattccagatctgacacactgctccaagagatccagtca
acaccctttgatgaaagcccagggaacaacataggtgaggcggtgaggttcacccggcaa
tacatgctgacccccacagctggaaggaggcccagggtgcctggagcaatcgtgatcatt
gctgacagaaaatctgtggacaacctgacccttgcagtcagcagcctaagagatgcaggc
gtgacggtgctagcagtgggtatagaccaagctgacagagaggaactgcggctggctgtg
acggatcgaaacccacagaacattctgtacgctagtacggcagaacgtctgaacacacta
catgctgatttggctgacttgctttgtgggatcgccagaattccagaggtgattcctggt
ccagagcagtgtactgtacagtgtcctcagggtgaaaagggagatcgtggtcagaagggt
gaaagaggcagagacggcacagatggacgcaagggtgagcctggccgtgatggtttgcct
gggagggagggtcccaggggaccagaaggtcgaccaggaacaccaggaagacctatccct
attaacccttcccaggttataaaaggggaaaagggggagagaggttttcctggagtggat
ggaaatccaggattaccaggaagaccaggggctgctggaaatgcaggtgttccaggttca
caaggtcttcctggagtcagaggaagtacaggtgaaccaggaggacagggcacacctggg
ccaaagggggataaaggtgaaaggggggaacctggttcagttgtatccagtttgccaggc
aggaaaggagaaccaggcgtcccaggaataccaggtaccccagggcgacccggcatagaa
ggagccaaaggagcccctggagttccaggtacacgaggtcaggatggtcggccaggaatt
ccaggaacaccaggactttccattaagggagataagggcagtcaaggagagcggggacct
ccaggaataggaagcggcgtggccgtgaagggtgaaaagggctcccctggtattccagga
gctgcaggtgtcctgggacctagagggccagcaggaccacagggcagtaaaggggataag
ggcgacgatggcactggactgcctggacctcagggaaagcaaggagagcccggtgacagg
ggcccccgtggacctgcaggcgagattggcagcaagggcgacagaggacagccaggtgaa
cctgggacacgaggagacagaggggagcgagggcctgttggggagactggagagaaaggt
gatcaaggaaaggcagggatcccaggaacaccaggcctgagaggtttaccgggaccaagt
ggaccagcaggagaaaagggaaatgaaggagcacgaggggagccaggaagaagtatgcca
ggtttacaaggaaggaaaggagaacagggagaacgaggtcttcctggctctgatggtcta
aagggagataggggagaaccaggacaaagaggagagaaaggttctccaggttcaggaggc
tcaggtgttgttggacctaaaggagagccaggagagccaggacgtccaggtcttaatgga
cgaccgggagccaagggagacccaggagaaccaggcgagagaggagagaatggtcgcccg
ggaatccctggaaaacccgggcttggtggaaaaccgggagaaaagggtgataagggcgat
gaaggcacacctggagaatcaggacttccaggaaagccaggagaaagaggtttgagggga
ttggcgggtcagccggggcggccaggagagaaaggagacatgggagatccaggagagcat
gggagaaatggcagtcctggacccgctggaccgagaggagagaagggagagcaaggactt
caagggcctgcagggccaccaggacaaattgctgagctacagggtcagctgaaaggagag
agaggagagaagggtgatgctggcgacccaggagagcatggcggcaaaggtcagaaaggg
gaagcgggaactcctggagctccaggactgcgaggtccagagggacttaggggacctgca
ggcataaaaggtgacacgggagaaagaggatcacctggagagaagggagaaagaggagcc
tctgggctggatggccgtcctggtctggatggtaaaccaggctctcctggaccccccgga
ctaaggggagatcctggaaaacaaggtgatgctgggagagatggattgccaggactgaga
ggagaacagggtcctcgggggccagctggtcctccaggaaatccaggaatacctggtaaa
gcaggcgaagatggcaaacctggtcctcaaggaaaaatgggtgaggatggagtgccagga
gaagatggaagaaagggtgacaaaggagaagacggggcagctgggagagatggccgtgat
ggacagaaaggagaccgtgggcctgcagggcctccaggcccctctggaccccaggggcct
gctggattgcctggcagcattggccctcctggacaggttgtgtacgtaaaaggggctgaa
gctgcacccattccgggtccacaggggcctccagggactccaggtgtccctggaattcca
ggagctatgggagcccgaggggagcgaggtccagcaggtcctaagggagatgctggagac
ccgggagaggatggggctcctggtaaacctgggacagcagtggatgtacaaaaagcactg
acgggccttgggatactggtatctgatctgaaggtgcttgtagacaggaaggacacaatt
ctatctcctgcagtgccaaaggttgaaaggggtgaaaagggagacagaggggaacctggg
tcaagaggaccatctggagcagatggcccccgtggttttcaaggagataggggaccaaaa
ggggaacaaggggagcgaggacccatcggacaaacagggcctccaggaagagccattgta
gaacgaggaccagagggtccccaggggccagctggagagcctggtaagcctggaatacca
ggtgttccgggaagagcaggggaacttggagaggctggaagaccaggagagaaaggagat
agaggggacaaaggtgacaaaggcgaagctggtctaattggattaccaggaccagctggc
cctccaggtcaaaagggtgattcgattttgcctggtgttcctggacttcgaggccctccg
ggacttaagggagagcctggttcttcaggaccattaggacccaaaggagagaggggttat
gtaggacctcgtggtgaaaaaggagatagaggggagcctggagaaaaaggacgtgaaggc
tcaatgggcatcccaggagaacctggaaaacctggacaggaggggaaaccaggcttgcct
gggttcccaggagttctaggcagaccgggaaacccaggagagcctggcatgagaggacca
actggacccatgggccctactggtatgccaggtccaccaggtataaagggtaatcaagga
gaagcaggcattgggatccagggtcctcccggtgctcaggggagcacaggtcggcctgga
ccagcaggtcccccaggagctgttggtccgcaggggcccccaggattgacggggcaggtg
ggtgaggcagggaagcctggtgtccctggaagagacggagttccgggtaaagaaggacta
cctgggttacctggaaagcagggtatttcaggacctccagggctgcctggcattaagggg
gagcagggagacagtggtcctcctgggaaggctgtgaatggagctcctggtcctaaagga
gacagaggtccaccaggtgtaacgctgccaggtacggttggagagcgaggtctagctggg
gaaaagggtaccaagggagaaaaaggtcctgctggcatcaaaggagccacgggaatggct
ggtgaaccaggagaacctggagaggatggagcaccgggaccaccagggcctaaaggagat
aagggagagaggggtgttggacagacaggtccgtctggtcgtattgggcctccaggtttg
aagggagatccagggcttcctggtccagctggccctccaggcccccaggggaaggctgga
gatcctggattgcctggtgtgcgaggggaaagtggacaaccaggacctcctggacccccg
ggagagaggggcctccaggggtttgctggccgcccgggaaacactgggcctcctggacct
cctgggcctgcgggacaggcaggtaaaacaggagaacctggagaacgaggatccaccgga
tttccaggtgcccgcggacctggtggacagaagggagaagcaggtgatcctggagttcct
ggtgaatcgggtttacccggaaaagatggcctattggggcgtaaaggggaaaagggagaa
gtcggtatcagtggactgagaggaatcaagggcgaccgtggacccaagggggcttgtgga
gctgatggacccaaaggagaaaagggggattcaggcattcatggacgatcaggcttacca
gggagaaagggtgaacagggcgacatcgggcctgctggggcccctgggattccaggaaaa
gagggacttattggcccaaagggtgatcgaggttttgatggagctgatggacctaaagga
gctcaaggagagaaaggtgaaaggggagcatctggtatacctggtcctccaggtcccaga
gggctagatggcccccctggcttgactggcccacaaggaccagctggtgcgaaaggccct
gagggactccaaggacagaagggggagagaggtcctattggtcctgcaatggtgggtcct
cggggtatcccaggaatcccaggagagagaggagagcagggagacatgggaccagatgga
gccaagggagacagaggagagccaggcatgacggaagatgagatcagagagtatgttcgc
actgaaatgaaacagcactgtgcatgtggaggttcaagccctgacactctgtcccagccc
gcattcagggctcgacctacaacagagcaagaactggtactgaatggtgagaagggacgg
gagctgcgtgtggtggtaaacaccaatgacccagagtacgagcacatctattccattgag
gccctggacgaacccacggacgacctgctctacttctccacagaatcagccaatcacact
gaaggtgaagatttaaaaactgttttggaaaagtctgccaaagtagatccaaataaatca
agcactgcagccttcactggaaaaacgtctgaaaaaagtcagaaaaaagggaaagctccg
cctctgactagggagaactcaggatcagtcaggcccaagaggagtctgcaagaggaaggt
ttaacagacctttgtctgctgcccatggatgagggcagctgtcagaggtacaccctgcgc
tggtacttcaacagccaggttcaagcctgcaggcctttcatctacagcggctgcaaagga
aacaacaaccggttccttcaccaagaggagtgtgaggaggcctgcctcaggaagaacaaa
gatattcaaccattagaaataccacggtga
DBGET
integrated database retrieval system
