Cyprinodon variegatus (sheepshead minnow): 107094140
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Entry
107094140 CDS
T06110
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107094140
04091 Lectins [BR:
cvg04091
]
107094140
Ion channels [BR:
cvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
107094140
Lectins [BR:
cvg04091
]
C-Type lectins
Others
107094140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Ion_trans
GPS
Motif
Other DBs
NCBI-GeneID:
107094140
NCBI-ProteinID:
XP_015245063
LinkDB
All DBs
Position
Unknown
AA seq
1522 aa
AA seq
DB search
MFNSVCEKLNSQTDESEKEDRKELREKMIDLLIDTIKESPLKIPEEAHVVARVLICLIQK
GDELSLSAQIDAAALFANISQSLLDMNVSTAEDKEAFLSAATAIVEGASKMFEYSSSKNI
SDALLNALNFTQSGLLKTMKINEDPIIIQQPHINLLVKRVTHESLHTEPISANSSSQPSF
SLPQLASDMFPSEEPVDVRMLSLDINPFSWNEKGNISGLIGGLSLTRQDGSGIPVENLSE
DIEHLNSLFVLKMVPSEDPLPFKLFLGYMDYPTDTNYVAMTEMPLPGTTEEERYTWLLSP
TTFQGNSGLHYLVVKPIVGPGIKSINATLSITPITSSCKFWNETLLDWEDSGCRVGVKTT
NLVTQCLCNHLTFFGSSFFVTPNLVDPSRTAELFATFAENPVVVCFVGALFATYLLAVVL
ARRKDIKDTVKVKGTVLEDNDPTDTYRYLLCVCTGHRMGASTSSQVIVTLLGADGNSKPH
HLTDPKKPVFERGAVDLFLLTTPSCLGELQGIRLWHNNSGSHPAWFVGNILVQDLQTEEK
WYFLCNSWLAIDMGDCCLDKLFPVSTEMDLKKFSNLFFMKTAKDFSDGHLWYSVISRPPS
STFTCVQRVSCCFSLLLCTMLTSIMFYGIPTDPSDQVMDLGHFEFTWQQFMIGVQSSLIM
FPINILIVSVFRNTRPRETSCCQNKEKKRNRLQKKSGVHTVSLQVTSTNSNDESSTMDIL
IKDIARILQSLSETTKYTDPSNKSGPGKESDINTVLTEVEELLKQNTKCSNDTKTVTPSQ
LSAEDIQKKSNKTQHLYRQICHLEEQLSVEAPSSFSSPYSLDKAQHQIQAVKSLLEQQLF
TSSHVDQNEPIHEKSNPEHGISRDGGQKKKQQRKGLLPWWFIFVGWLLIIGTSFVSGYFT
MLYGLKFGKERSISWLVSMVVSFFQSLLFIQPLKVICFAVFFALVIKKVDEEDFQNVAFE
RSERKSGNQQTNQWGYQLYDPPPPADIARMKRNKIMEQKAFALLTEIFVYIGFMWMLLLV
AYGQKDGNAFLLKRHIRNSFSKGVQNSMTLQDVFTWANTTLLKNLFGSYPGFITDGNSKL
VGNARLRQLRVQQNSCQIASLMIGLVPDCDALYSSEIEDVGSYGSGWNHSVKDNISTSAL
SPWMYQTEAQLRARPFWGRLVLYRGGGFVAELGPMFQNASRTLEYLFRNKWLDKYTRAIF
VEFTVYNANVNLFCIITLLMETSAVGAFQFYTDLQTIRLYPSTGGLYFFVMAAEIIYMLF
ILYYMFKQAKLLKQQRWVYFKNKWNLLELSIILLSWSAVGVFIQRTLLGNRDLTYYQNHK
DQFASFYETAIADSTLQYLIAFIVLLSTVKLWHLLRLNPKMNLITAALRRAWNDISSFLL
IIVIALVAYSVASNVIYGWKISSYKTFIDSLLTIIRLQIGIFNYNEILESHPVLGGLLFG
SCIVLMTFVILNLFVSVILVSLNMEQINHKPSEDEEIVDLLLTKLCNLFGFKYQNGKDPT
DPDNERSSNLTINKNKDTLINS
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgttcaattctgtgtgtgaaaagcttaacagccaaactgatgaatcagaaaaagaagat
cgaaaagagctgagagagaagatgattgatttgctgattgatacaataaaggaatctcct
ttaaaaattccagaagaggctcacgtggtagccagagtgcttatctgtcttatccagaaa
ggcgatgaactcagtttatctgcacagattgatgctgctgcattgtttgctaacatcagc
caatctctcctggatatgaatgtgagcacagctgaagacaaggaagcatttctctctgca
gcaacggccatagtggaaggagcaagcaagatgtttgagtattcttccagcaaaaacatc
tctgatgctctgcttaatgctctcaactttacacaaagtggtttgttgaaaacaatgaag
attaacgaagacccgattataatacaacaacctcacattaatctactagttaaaagagtg
acacatgaaagtttacacacagagcccataagtgccaactccagttctcagccctcattt
tctctgcctcaactggcttctgacatgtttccctcagaggaaccagtggatgttcgaatg
ctgagtttagatataaaccccttttcttggaacgagaaaggaaacatcagtggcctaata
ggtggtctgtccctcacaagacaagatggatccggtatccctgtggagaacttaagtgaa
gatattgagcatctaaattcactatttgttttaaagatggtgccttcagaagatcctcta
ccctttaaacttttccttggttacatggattatcccactgacaccaattatgtagcaatg
accgagatgcctcttccaggaacaactgaagaagaaagatatacatggctacttagccct
acaacttttcagggaaactctgggttacattatctggtggttaaaccaattgttggtcca
ggtataaaatctatcaatgccacattatctattacccccatcacatcctcatgcaaattt
tggaatgaaactctgttggactgggaggattctggctgcagagttggtgtgaagaccaca
aatttagtcacccagtgtctctgcaatcacctcacattttttgggagctctttttttgtg
actccgaatcttgtcgatccttcacgcactgctgagctttttgcaacctttgctgagaat
cccgtggtcgtgtgctttgtcggggctctgtttgcgacctacctccttgcggttgtgttg
gcacgaagaaaagacattaaagacacagtcaaggtgaagggaacagttcttgaggacaac
gaccctacggatacttaccgctatctgttgtgtgtttgcactgggcatcgaatgggagcc
tccacatcttctcaggttatagtcactctccttggcgcagacggaaacagtaagcctcac
cacctgactgatccaaagaagcctgtgtttgagaggggagcggtggatttgttcctgctg
actacaccctcctgtttgggtgagctgcagggcatcagactgtggcacaacaattctggg
agtcatcctgcttggtttgttggcaacatcctggttcaggatttacagacagaagagaaa
tggtactttctatgcaattcctggcttgcaatagacatgggtgattgctgtctagataaa
ctcttccctgtttccacggagatggacctgaagaaattcagtaatttgttcttcatgaaa
acggcaaaggattttagtgatggtcacctttggtactctgtgatcagtcgaccaccaagc
agcaccttcacctgtgtacaaagagtgtcctgctgtttctccctgctgctctgcaccatg
ttgaccagcatcatgttttacggaatcccaacagacccctccgaccaggtcatggatttg
ggtcactttgagttcacctggcagcagttcatgattggggtccagagttccctcatcatg
tttcccataaatatcctcatagtcagcgtcttcagaaacactcgtcctcgagagacttcc
tgttgtcaaaacaaagaaaagaaaagaaatcgcctccagaaaaagagtggtgtccacacg
gtttctctgcaagtgacaagcaccaacagcaacgatgaaagctccactatggacatcctc
ataaaagatattgcaagaatccttcaatcactctctgagacaaccaaatacacagaccca
tccaacaagtctgggcccggaaaagaaagtgacattaatactgttcttacagaggtggaa
gaattactcaaacagaataccaaatgcagcaatgacaccaagacagtgacaccgtctcaa
ctatctgctgaagacattcaaaagaagagcaacaaaacccagcatctgtacagacaaata
tgtcaccttgaagagcagctgagtgtggaagccccgtccagcttctctagtccatacagt
ttggataaggctcagcaccagatccaggcggtgaagagcctccttgaacaacagcttttc
acatccagccatgtggatcaaaatgaacccatacatgagaagtctaatcctgagcatggc
atatcaagggatggcggtcagaaaaaaaagcagcagcgtaagggtttgctaccctggtgg
tttatctttgttggctggctgctgataattggaaccagttttgtatcaggatatttcaca
atgctgtatggacttaaatttgggaaggagcgttccatcagctggttggtatccatggtt
gtgtccttctttcaaagtcttctctttattcagccactgaaggtaatatgctttgcagtt
ttttttgcacttgtaataaaaaaagttgatgaagaagattttcaaaatgtggcatttgaa
agaagtgaaagaaaatctggtaatcaacaaacaaaccagtggggttaccagctctacgat
ccacctcctcctgcagacattgcgagaatgaagaggaacaagatcatggaacagaaggca
tttgctttgcttactgaaatttttgtttacataggtttcatgtggatgctactgctggtg
gcctacggtcagaaagatggcaatgcttttttgctgaaacgacacattagaaatagcttc
agtaaaggtgtccagaacagcatgactctccaggatgtgtttacatgggctaacaccact
ttactgaaaaacctttttgggtcgtacccaggatttatcacagatggaaactccaagctc
gtaggaaatgcccgtcttcgtcaattaagagttcagcagaactcgtgtcagattgcaagt
ctcatgattggattagtgccagactgtgatgccctatattcatctgagatagaggatgtg
gggtcttacggatctggctggaatcactctgttaaggataatatttcaacaagtgccttg
tctccatggatgtaccagactgaagcccagctcagggctagacctttctgggggagactg
gtgctctatagaggagggggctttgtggctgagcttggcccaatgtttcaaaatgccagc
agaacgcttgagtatcttttccgcaataaatggcttgataagtacacaagggcaatcttt
gttgagttcaccgtttacaatgcaaatgtaaacctcttctgcatcatcacactcttgatg
gagacctcagcagttggagcatttcagttctacactgatctgcagactattcgtctctac
ccgtcaacagggggactttacttctttgttatggctgctgagataatttacatgcttttc
attctctattacatgttcaagcaggccaaattattgaagcaacagcggtgggtttatttc
aagaacaagtggaaccttctggagctgagtatcatcctgctaagctggagtgctgtggga
gtgttcattcaaaggaccttgctcggaaaccgcgatttgacttactaccaaaaccacaaa
gaccaatttgccagtttttatgagacagctatagctgattcaacgcttcagtatctgatt
gccttcattgtccttctatccactgtcaaactgtggcaccttctccgactaaaccccaag
atgaacctgatcacggctgccctgcgtcgagcatggaatgacatatcaagttttctactg
atcattgtgatcgcgttagtggcatattcagttgcaagcaatgtgatttatggctggaag
atttcatcctacaaaacctttatagattctcttttgaccatcatcaggctgcagatcggc
atatttaactataatgagattttggagagtcaccctgtgcttggaggattgctgttcggt
tcctgcattgtcctaatgacttttgtgattctaaatctcttcgtttcagttattcttgta
tcgttgaacatggagcaaataaaccataagccttctgaagatgaagagattgttgacctc
cttctgaccaaactctgcaatctatttggcttcaaatatcaaaatggaaaagaccccacg
gatcctgataatgagaggagcagcaacctgacaattaataaaaacaaggatacccttatc
aactcctga
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