Cyprinodon variegatus (sheepshead minnow): 107094162
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Entry
107094162 CDS
T06110
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107094162 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107094162 (polr1a)
Enzymes [BR:
cvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107094162 (polr1a)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107094162 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
HMG_box_2
SURF2
CDC27
Motif
Other DBs
NCBI-GeneID:
107094162
NCBI-ProteinID:
XP_015245090
Ensembl:
ENSCVAG00000020941
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MLFSKEVPWRRLEGMTFGLYSTEEIRKLSVKAISNSRFLDAVGNVAPNSLYDLALGPADI
KEVCSTCCQDFNNCPGHFGHVELPLPVYNPLFFDKLYLLIRGSCLACHMLTCPRAAIHLL
VNQLRLVEHGAMQEVYVIESVLNQHLEENPKATGDEIERLLSEFTSSVVGANAKASQGSK
PIKHLVEKRSSLINDFWKVQMKTRKCPYCGGGRSTVRREHNSKLIVTMPTGMQTGENTGL
LAGTRIFLTASTAREHISKVWEKEGFFLKFLFPGLEDSTGSEGQKGFYPDLFFLELLVVP
PCRYRPINRLGDQMFTNGQTVNMQAVMKDCGVIRKLLALLAGEKHAEAEEEPLEAEDQTF
LSGISGATLADKLYNTWIRLQSHVNIVFDSDMDKLMADKYPGIRQILEKKDGLFRKHMMG
KRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGA
SMVINEDGRKTILSATDPSQREAVAKQLLTPSTGPHKMPMKIVNRHIKNGDVLLLNRQPT
LHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTN
HQYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFFTKDQYTELVYRGLTDKVGRVKLLPPSI
VKPQQLWTGKQVVSTLLLNIIPEKAVPLNLVGKAKIPGKAWIQLPPRAAPGYKPESMCES
QVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGF
TLGVEDILVKPGANRERKRIIEESLKIGTKALQAAFSLPANVDPAEARSRWQDAHLSPDQ
REFSLADHKFKEVANQVNNDINKVCMPVGLHTPFPHNNLQLMVQSGAKGSTVNTMQISCL
LGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGREGL
VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVIQFLYGEDGLDIPKTQFLQPR
QFPFIEDNYEVIRRSQDLDSVLARLDPQNASHHFAAVQRWRAKRELACARRGAFLLYSQK
KLAKLREALQVTEPVPNQDPAVLQLVKDWHSLDEASRAKYRKRSSRCPEPSLGLFRPDVC
FGSVSENFYDITEKYLQNRSSTAEGDVESQSLRRLLHYKWQRSLCDPGEAVGLLAAQSIG
EPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNTKRALKRAKT
LRKQLSRVCLAEVLQKVDVVETLLIDGCQKLRSFKVKFHFLPPERYRDDKLLTPHQILRY
MESRFFRLLLDAIKKRTAKLASIAVETRRVSPRDKDLDEPGTAGVEDGEAEEEPEIADDQ
GEEGDADASDAKRKSKQEEEVDYESEDEDDDGDVEEDQKEEEAEVNNQSNTVEESQPEVA
VAGLERKKKKKQQVEMGEGDEHSVQMRVNSVLSSNSAIQNYSFDQQEELWCEVELTVPVN
NVHFDLTSVLSTLAQNAVIMETRGLTRCLLSETTTKSGEKQTLLNTEGINMHEIFKHSDI
LDINKLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGIY
KPLNRHAIMSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVRGGTGLFE
LKQPLQ
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgctgttttctaaagaggtgccatggcggcggctagagggcatgacctttggtttgtac
tcgaccgaggaaataaggaagctgagcgtgaaagccatctcaaactccaggttcctggat
gctgtgggaaatgtggccccaaacagtttatatgatctggccctggggccagcagacatc
aaagaggtctgttcaacctgctgtcaggatttcaacaactgtccaggacactttggacac
gtagagctgcctctcccagtatacaaccctctgttctttgataaactctacctgttgatt
cgcggttcatgtctggcgtgccacatgttgacgtgtccccgagccgccatccacctgctg
gtgaaccagctgcggttagtggagcacggcgccatgcaggaggtctacgtcatcgagagc
gttctcaatcagcacctggaggaaaaccccaaagctacaggagatgagatcgagcggctg
ctgagtgagtttaccagcagcgtagttggagcgaacgccaaagcttcgcagggatccaaa
cctattaaacacctggttgagaagaggagcagtcttataaacgacttctggaaggtccag
atgaaaaccaggaagtgtccttactgcggtggcggcaggtcaacggtgcgacgggaacac
aacagcaagctgatcgtcaccatgccaacgggaatgcaaactggagaaaacacaggtctg
ctggctggaaccagaatcttcctcactgccagtacggccagagagcacatcagtaaagtg
tgggagaaagaaggtttcttcctgaagtttctgtttcccgggctggaggacagcacaggc
tcagaggggcagaagggtttctatccagacctcttcttcctggagctgctggtggtccca
ccctgcaggtaccgtcccatcaaccggctgggcgaccagatgttcaccaacggtcagacc
gtcaacatgcaggctgtgatgaaggactgtggggtcatcagaaaacttctggctctacta
gcaggagaaaaacacgccgaggcggaggaagagcctttggaggcagaagatcagacgttt
ctgtcaggaataagcggagcgacgttggcggataaactgtataacacgtggatccgcctg
cagagccatgttaacattgtctttgacagcgacatggacaagctgatggccgacaaatac
cccgggatcagacagatcctggagaagaaggatggattgttccggaaacacatgatgggc
aaacgagtggattacgctgcacggtccgtcatctgtcctgacatgtatattggaacaaac
gagatcgggatccccatggtttttgccaccaagctgacgtacccacagcccgtcactcca
tggaacgtgaaagagctccggcaggccgtccttaacgggcccaacgtccaccccggcgcc
tccatggtgatcaacgaagatggcaggaagaccatcctgtcagccaccgacccctcacag
agggaggcggttgccaagcaactgctgacaccctctacaggtccacacaagatgcccatg
aagatcgtgaatcgccacatcaagaacggagacgttctgttactcaacagacagccgact
ctgcatagaccttcgattcaagctcactgcgctcgcatcttaccaggagagaaggttctg
aggctccactacgccaactgcaaagcctacaacgctgactttgatggagacgagatgaac
gctcacttccctcagagcgagcttggcagagcagaggcctacactctagttagcaccaac
catcagtacctggtccccaaggacggtaaacctttagcaggtcttatccaggaccacatg
gtttcggggaccaagatgaccataagaggctgcttcttcaccaaagaccagtatacagag
ctggtgtacagaggactgacagacaaagtagggcgagtgaagctactacctccgagcatc
gtcaaaccacagcagctgtggacggggaagcaggtggtctccaccttgctgctgaacatc
atcccagagaaagccgtccctctaaacctcgtgggcaaagcaaaaatcccaggcaaggct
tggatccagctcccacctcgagctgctcctggctacaaaccagagagcatgtgtgagtca
caggtggtgatccgtcagggcgagctgttagtcggcgttctggacaaagctcactacggc
tcctctgcttacggtttggtccactgttgctacgagctctacggaggagagaccagtggg
aaactgctcagctgtctggctcgcctctttaccgcttacctccagctctacagaggcttc
actctgggagtggaagacattctggtgaaacctggagccaacagagagaggaaaagaatc
atcgaagaatctctgaaaattggcacaaaggccctccaggcagctttcagcctccctgcc
aacgtggatccagctgaagctcggagccgatggcaggacgcccacctcagccccgaccag
agagagttcagcttggctgaccacaaattcaaagaagtggccaaccaagtcaacaatgac
atcaacaaggtgtgtatgcctgtaggactgcacaccccgttcccacacaacaacctgcag
ctcatggtccagtcaggagcaaagggatccacagtgaacaccatgcagatctcctgtctg
ctgggtcagatcgagctggagggccgcaggcctccgctgatgccttcagggaagtttcta
ccttgtttccagccgtacgatccttcgcccggagcaggaggcttcgtttctggacggttc
ctcacgggcatcaaacctcaggagtttttcttccactgcatggccggcagagaaggactg
gtagacacagctgtgaaaacatccagatcaggatacctgcagagatgcatcatcaagcat
ctggagggtttggtagtgcagtacgacctgaccgtcagagacagcgacggatctgtcatc
cagttcctgtacggtgaggacgggctagacatccctaagacccagttcctgcagccgagg
cagttccccttcatcgaggacaactatgaggtcatcaggaggtcccaggacctggacagt
gttctggctcgtttggaccctcagaatgcatctcaccactttgcagccgttcagcgctgg
agagcaaagagagagctggcgtgtgctcgcagaggagcctttttactatattctcagaag
aagttagcaaagttaagagaggctctccaggtaacggagccagtgcccaaccaggatcct
gcagtgctccagctggtgaaggattggcactctctggatgaagccagcagagccaaatac
agaaagaggtcgtcccggtgccctgaaccgtccctgggcttgtttaggcccgacgtctgc
ttcggatcagtttctgaaaacttctacgatatcacagagaaataccttcaaaacagaagc
agcacagcagagggcgacgtggagtcccagagcctgcgccggctgcttcattataagtgg
cagcgatccctgtgtgaccctggtgaggcagtggggctgctggcggctcagtccatagga
gagccctccacccagatgaccctcaacaccttccactttgcaggcagaggagagatgaac
gtcactttgggaatccctcgactcagagagatcctgatggtggccagttccaacattaaa
acccccatgatgagtgttccagtgctcaacaccaagagagctttgaagagagcaaagacg
ctgaggaagcagctcagcagagtctgcctcgctgaggtgctgcagaaggtagacgtggtc
gagacccttttgatcgatggctgtcaaaaactgcgctccttcaaggtcaagttccacttc
ctgcctcctgagcgttaccgtgacgacaagcttcttaccccccaccagatcctgcgctac
atggaatcgaggttcttccgtctcctcctggatgccatcaaaaagcgcaccgccaagtta
gcctccatcgccgtggagaccaggagggtctcccccagagataaagacctggacgagccc
ggcacagcgggggtagaagatggagaagcagaggaggagccagagatcgccgacgatcag
ggggaagaaggagacgccgacgcatcagatgccaagaggaaaagcaaacaggaggaggag
gtagactatgaaagcgaagacgaggacgacgatggcgatgttgaggaggatcagaaggag
gaggaggccgaggtgaacaaccaatctaacactgtggaggagtcccagccggaggtggca
gtagctggattagagcgcaagaagaagaagaagcagcaagtggaaatgggggaaggagac
gagcattcggtccagatgagggttaactcggttctgtcatcaaactcggccatccagaat
tattccttcgatcagcaggaagaactttggtgtgaggtggagctgaccgtccccgtcaac
aacgtgcacttcgacctgacctcggtcctgtccaccctggcccagaacgcagtcatcatg
gagaccaggggcctgacgcggtgcctgctcagcgaaaccaccaccaagtctggcgaaaag
cagacgcttctcaacacagagggcatcaacatgcacgagatcttcaagcacagcgacatc
ctggacatcaacaagctgtactccaatgaggtccacgccatggccaacacctacgggatc
gaagtggctctgaaggtcatcgagaaggagatcaaggacgtctttgcggtctatggtatc
gaggtggaccccaggcacctgtctctggtggctgattacatgtgttttgaaggcatctac
aagcctttaaaccgacacgccatcatgtccaactcctcgcctctgcaacagatgaccttt
gagaccagctacaagttcctgaagcaggccaccatgctggggtcacatgatcagctggtg
tctccttcagcctgcttggtcgttgggaaggtggtcagaggtggaaccggcctgtttgaa
ctgaagcagcctctacagtag
DBGET
integrated database retrieval system
