Cyprinodon variegatus (sheepshead minnow): 107094181
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Entry
107094181 CDS
T06110
Name
(RefSeq) neuronal PAS domain-containing protein 1-like isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107094181
Transcription factors [BR:
cvg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
107094181
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
107094181
NCBI-ProteinID:
XP_015245113
LinkDB
All DBs
Position
Unknown
AA seq
813 aa
AA seq
DB search
MASMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRTFASQGDPPWSPLLEGDNNCNKVRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIKPHLRAEAGCHTAPDSASSTASTSSLAGTPEPAGPSSPHFTADDPPERGF
FIRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPGSTRSVRRPMGLVALAHTLPPST
LNEVRMESNMFVFRVNMDLQVTYCENRISEYMDLTPAEVVGHTCYHFVHVEDLENIRQSH
EDLLRKGQVVTGYYRWLQRRGGYLWIQSTATVSINHKAPHERNVIWVNYVLSRTEMPDTP
LDLLQLPESIRAERLRVSSSPTDGSPQARGQTSVKSSAGKSDSDSKGREKFAAPAVQSED
RRKRLLRSDHEGAPPESRRRLEELRHSEEAVSASSDLASESEGDEEEEPDWDQGGDSDRL
KQEDSGGGGKQSRGGDTPTRGDRAGRVHNGRAVIQQLKSVVTPSTMPGSPTIKTEHEVLT
TGGRWGSHTQTSTPHTHTSQPQLSHAHTPSSSLNGDSPTTPIPDSSSSSEAPSKGLFTPP
SPALSPAMSVSSPQPREDRAVSGVVSRSASGGGTGNGPDFELLQRLAGGAAGRVLFHPLA
LGPQGPQSLYAPSTIRYAPPELPPSHHHGTGHGDGLQLRSDHHKGPPPTFFPHLQRLAGL
PPFSGFSPSDSPFSSGLPFCMNGLRGAAGTEED
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcatgccgtttgtcagcgaggggaaatgtgtgagtgtggagtgggatttccta
caaggacttctggccaagcctcctacactaccctgtctccagaacttgcgtaaagagaaa
tctcgcaatgcagctcgttcacggcggggaaaggagaactttgagttcttcgagctggcc
aagatgctgcctttgccaggtgccatcacaagtcagctcgacaaagcttctgtcatccgg
ctgactatcagctatctgcacatgcgcacctttgcaagccaaggagacccaccgtggagc
cctctgctggagggggacaacaactgcaacaaagtgagacgatcatctcattctctggcc
actgatatgttcgagcagcaccttggggctcatctcctgcagtctctagatggctttgtt
ttcgtggtcagtcaagaaggacgcttcctctacatctcagagacagtttccatctatctg
gggctctcacaggtggagctgaccggcagcagtgtgtttgactacatccacccggcggac
cacgtggagatggccgagcggctgggaatcaaaccacatctgcgggctgaggctggctgc
cacacggcccctgacagcgcttccagcaccgcctccacctcttcacttgccggtacccct
gaacctgcaggtccctctagtcctcattttactgctgacgatcctccagaacgtgggttt
ttcatccgcatgaagtccacactcaccaaaagaggcctgcatgtcaagtcctcaggatac
aaggtaatccacgtaacgggacgaatacgttgccgccctgcccttgtccctggctctaca
cgctctgtccgtcgtccaatggggttggttgctctcgcccacacgctcccgccctccacg
cttaacgaagtccgtatggaaagcaacatgtttgtcttccgagtgaacatggacctgcag
gtcacatattgtgaaaacagaatctcagagtatatggatctgactcctgcggaagtggtg
ggacatacatgctatcattttgtacatgtggaagacctggaaaatatccggcagagccat
gaggacctgctgagaaaaggccaagtggtgacaggctactatcgttggctgcagaggaga
ggaggttacttgtggatccagtccactgccactgtctccatcaatcacaaagccccccat
gagcgcaatgtcatctgggtgaactacgtcctgagtcgaactgagatgcctgacaccccc
ctggatctgctgcagctacctgagagcataagagcagagcgactccgagttagctcgtcc
cccactgatggctctccacaggccagaggtcaaacatctgtgaagagctcagcgggaaag
agtgactctgatagcaaaggtagagagaaatttgctgctcctgccgtccaatcagaggac
aggaggaagcgcctgctgaggtctgaccatgagggagcacctcctgaaagtcgtcgtcgc
ctggaggaacttagacactctgaggaggctgtgtctgcctcctcagacttagcaagtgaa
agcgagggggatgaggaggaagaaccagactgggaccaggggggagacagtgacagactg
aagcaggaagacagcgggggagggggtaaacagagcagaggaggggacaccccaaccaga
ggagacagagcaggcagggtgcacaacgggcgggctgtgatccagcaactaaagagtgtg
gtgaccccgtctactatgccaggcagtcccaccatcaaaactgaacatgaagtcctgacc
actggagggcgctgggggtcacacacgcaaacctcaacccctcacacgcacacctctcag
ccccagctgtcacatgcacacacaccgtctagtagcttaaacggcgacagccccaccacc
ccaatccctgactcctcatccagcagcgaagccccgtctaaaggcttgttcacccctccc
tctccagccctgtcccccgccatgtccgtgtcctcccctcagccccgtgaggacagggct
gtttctggggtggtcagtcgcagcgcgtccggtgggggaacgggtaatggccccgacttc
gaactgctccagagactggcaggcggtgcagctggacgggtcctctttcatccccttgct
ctcggcccacagggccctcagagcctatacgccccgagcactatccgctacgctccacca
gagctgcccccctcccaccaccatggcacggggcacggcgacggcctgcagctacgatca
gaccaccacaagggacccccaccgaccttcttcccacacttacagcggctggccgggcta
ccacccttcagtggtttctctccctctgacagccctttctcctctggcctgcctttctgt
atgaatggattgaggggagctgcaggcaccgaggaagactga
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