Cyprinodon variegatus (sheepshead minnow): 107094318
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Entry
107094318 CDS
T06110
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03440
Homologous recombination
cvg03450
Non-homologous end-joining
cvg04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107094318 (rad50)
03450 Non-homologous end-joining
107094318 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
107094318 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvg03032
]
107094318 (rad50)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107094318 (rad50)
DNA replication proteins [BR:
cvg03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
107094318 (rad50)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
107094318 (rad50)
BRCA1-C complex
107094318 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
107094318 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_15
AAA_21
SMC_N
ABC_tran
zf-met
AAA_29
AAA_22
AAA_13
AAA_16
Motif
Other DBs
NCBI-GeneID:
107094318
NCBI-ProteinID:
XP_015245349
Ensembl:
ENSCVAG00000014463
LinkDB
All DBs
Position
Unknown
AA seq
1306 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVSIQRSMSCTQKAKNYSFKSLEQVITR
IKDGKKVSLPSKCGELDREMISALGVCKPVLNHVIFCHQEESNWPLSEGKALKEKFDSIF
AATKYIKALETMRQLRLKQNQTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMASKDS
VQQIESQIDPLENRIIEIDQKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
DEELQEIYQNHQRTVREKERRLTDCQKELERAGRECQRLNRVKSDLLVEQGRLQQEADRH
TQNIRSRDTLVRSLSSHLEMEGYDRPPFTSLQLESFHRHITQRLEQEKETLRQILADLQE
KEQQKQQSIDELRDKKTGLERTVELKRDMQGKKQQELRNVRADLQKLEGSSSRLQELENE
LAKAEGDLQRAVQSSNVEELRTEIEELQKEKTELNRVQRQLDEEMQMLNAHTTARTQMDM
LKKDKIEKEEQVRKIKSRHGDELVSLLGHFPNKRELEDWIYSKSKEINSTRNRLAKLNKD
LASSEQNKSHVTSELRKKEQQLTSDEEKFFSVCGSQDLEQDLGKLQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKRDEMISLRPVRQSIVQFQEKELPELKNRLQSVNREIERLKADVEEQEALLGTLMS
EEETAKACLQDISLMDRYLMDLKELERKIAQQSAKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQILKSAVNETKAEKLQLSSDMQRQQQLEEQCVEFTAEIQA
LTRDIREAKEQLSPLSVALDKLQQEKQELMERKKQKQEEGQEKISVIKERVKAVSMLERD
IKKYVDEGKDEYKEQKESELQETNTQLHEAEKQKEKISKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVLAKREALMKDMGNMQVLQLRHERRDAERKLEDLKKNRSIALGRQKG
FEEEILDYRKELREDQYDKADERYKNKMITMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAAVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVPTMPLMCLCQHAYLEMLHCCGTGIIPDALLNFISLPVRIIKSRSRQRNFQLLI
ITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITTCSISTLSSYLH
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaatagataaaatgagcatcctcggggtgaggagctttggggttgaggataag
gacaagcaagtcatcagtttctttacacctttgactgttctggtgggacccaatggagca
gggaaaacgactataattgaatgcctcaagtatgcaacatcgggggaacttcctcctgga
tctaaaggaggagcctttgttcatgatccaaaggatgcccatgagactgacgttcgagct
cagatccgactcttattctcagatgtaaatggagaaaaagtctccatccagcgctccatg
tcctgcactcaaaaagcaaagaactactctttcaaaagcttagagcaggttatcactaga
ataaaagatggtaaaaaagtaagtcttccctccaagtgtggtgagctggacagagagatg
atttctgctttaggagtatgcaagcccgtgctgaatcatgtcatcttttgtcatcaagaa
gagtccaactggccacttagtgagggcaaagcacttaaagagaaatttgactccatcttt
gctgcaactaaatatattaaagctctagagacaatgcgacagctgcgcctcaaacaaaat
cagaccgtcaaagaatgccaagtggagttacgctacctgaagcagaacaaggagaaggct
cagcagatcagggagaccgtggccaccaaagaagctcagctgatggcctccaaagacagt
gtccagcagatagagagccagattgatccccttgagaatcgaatcatagaaattgaccag
aaactggggaaggtgatgaagttagacaatgacataaaggctttggacagcaggaagaaa
caaatggaggaggacaacaaggagctggaggaaaccatggagcaggtgtttcagggttca
gatgaggaactgcaggagatctaccagaaccaccagaggacagtgagggagaaggaacgc
cggctcacagactgtcagaaagagctggagcgagctggtcgggaatgtcagagactcaat
agagtaaagtcggatctcttagttgaacaaggtcgtcttcagcaggaagccgatcgccat
acccagaacatcaggagccgcgatactctggttcgctctctgtcatcccatctggagatg
gagggttatgaccggccgcccttcacttctctgcagcttgaaagctttcatcgccacatc
acacagagactggagcaggagaaagaaacactcaggcagattctagctgatttgcaggaa
aaggagcaacagaagcagcaatctatcgatgaactgagggataagaagacgggccttgag
agaacagtcgagttgaagagggatatgcaaggaaaaaagcaacaggaactaaggaatgtc
agggcagatctgcagaagcttgaagggtcctctagtcggctgcaagagctggaaaatgaa
ttggccaaagctgaaggggatctgcaacgtgccgttcagagttccaacgttgaagagctg
cggactgagattgaggaacttcagaaagagaaaactgagcttaaccgagtgcagaggcag
ctcgatgaggagatgcagatgctcaacgcgcacacaactgctcgcacgcagatggacatg
ctgaagaaagataaaatagagaaggaggagcaggtacgcaaaataaagtctcgtcatggt
gacgaactggtgtccctcttgggccattttcccaacaagcgagagctggaagattggatc
tattccaagtctaaggaaatcaatagcaccaggaacagacttgctaaacttaacaaggac
ttggcatcaagtgagcagaacaaaagtcatgttacttcagagttgcgcaagaaggagcaa
caattaaccagcgatgaagagaagttcttcagtgtttgtggcagtcaggatctggagcag
gatttgggaaagctgcaggaagatctggagaagatatccaaacaaagagccatgttagca
ggagctacagcagtgtacacccagttcatcagccaactgacagaggagagggagccctgc
tgccctgtctgccagaggacttttccttcagaatctgatctgcaggaagttatcagcgac
atgcaatccaagttacggctggttcctgacaagctgaagaacacagagcaggacctgaag
agaaaggagaggaagagggatgaaatgatctccctcagacctgtgagacagtccattgtt
caatttcaagagaaggagctgcctgagctgaagaaccggcttcagagtgtcaacagagaa
atcgagaggctcaaggctgatgtagaagagcaggaggctcttcttggtaccttaatgtct
gaggaggaaactgcaaaggcctgcctgcaagacatatctctaatggacagatacctgatg
gacctgaaggagctggagagaaaaattgctcagcagtcagctaaactccagggagtagac
ctgaccagaaccatccagcaagttagtcaggagaaacaagaaacccagcacaaacttgac
accacttctagcaaaatggagctgaaacgcaagctgatccaagaccagcaggatcagatt
cagatcttgaaaagtgccgtcaatgaaacgaaggcagagaagctccagcttagcagcgac
atgcaaaggcagcagcagctggaggagcagtgtgttgaattcactgcagagatacaagct
ttaacgagagacatccgggaagcgaaggagcaactgtcccctctatctgttgctttggat
aagctgcaacaagagaaacaagagctgatggagcgcaagaagcagaaacaggaagaaggc
caggagaagatcagtgtcataaaagagagggtcaaagccgtctccatgttggagagagac
atcaaaaaatacgtagatgaaggaaaagatgaatataaagagcaaaaagaatcagagctt
caagaaaccaacactcaactccacgaggctgagaagcagaaagagaaaattagtaaggag
atgggaaacattcgtcaggacatagacactcaaaaggttcaagagcgctggttgcaagac
aatctaacattacggaagcgggttgaggagttgaaggaggttctagctaaacgagaagct
ctcatgaaagacatgggcaacatgcaggtgctgcagctgcgccatgaacgtcgtgatgca
gaacgcaagttagaggatttgaagaagaaccggagcatcgcgctgggccggcagaaaggc
tttgaagaagagatactggattacagaaaagagttgagagaggaccagtatgacaaagct
gatgagcgctacaaaaacaagatgatcacgatgaggaccacagagttggtcataaaggac
cttgatctctactacaaagcccttgatcaaaccatcatgaaattccacagtatgaaaatg
gatgagatcaataagattattagagacctgtggcgcagcacctacaggggtcaagatatc
gagtatgtggagatcaggtcggatgtggatgagaattcatcggctgcagtaaagaggagg
gtttacaactacagagtagttatggtgaaaggagatacagctttggatatgagaggacgc
tgcagcgctggccagaaggtaccaacaatgccacttatgtgtttgtgccaacatgcatat
ttagaaatgttgcattgctgtggaactggcattattccggatgctctactaaactttatc
tctttgcccgtcagaatcatcaagagtcgttctcgtcagcgtaacttccagctgcttatc
atcacccacgatgaagactttgtggaactcctgggccgctccagctatattgagcacttc
tatcgaatccgcaagaaccaggaccaaaactcggaaatcaccacgtgcagcatctccacc
ctctcatcatatctccattga
DBGET
integrated database retrieval system
