Cyprinodon variegatus (sheepshead minnow): 107094828
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Entry
107094828 CDS
T06110
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107094828
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107094828
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107094828
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107094828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
Motif
Other DBs
NCBI-GeneID:
107094828
NCBI-ProteinID:
XP_015246168
Ensembl:
ENSCVAG00000016260
LinkDB
All DBs
Position
Unknown
AA seq
1485 aa
AA seq
DB search
MLRFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCVQEAQQYNDKEVWKPEPCRICVC
DSGAVLCDEILCEEVKESCTNPIIPPGECCPICPADATAPFEAFGAKGQKGEPGEIADVV
GPRGPPGPMGPSGEQGPRGEAGAKGDKGSPGPRGRDGEPGVPGNPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGAPGETGEPGPAGPM
GPRGPPGPSGKPGSDGDPGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAK
GETGAAGAKGEAGAAGENGSPGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGSPGAKGEAGPTGARGAEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGETGPKGELGPAGPQ
GAPGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAA
GPKGATGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLVGRPGLRGLPGKDGETGPSGPPGPAGPAGERGEQGQP
GPPGFQGLPGPTGSPGESGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGPQGLQGPR
GLPGTPGSDGPKGAIGPAGAPGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAP
GKDGARGLTGPIGPPGPSGPNGAKGETGPTGPTGAPGVRGAPGDRGEVGPPGPAGFAGPP
GADGQPGAKGELGESGQKGEAGAPGPQGPSGAPGPVGPTGVAGPKGARGAQGAPGATGFP
GAAGRVGPPGANGNPGPPGPAGPSGKDGPKGVRGDAGPPGRPGDAGLRGPAGPPGEKGEP
GEDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGAGDRGPP
GPVGPPGLTGPAGEPGREGTPGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGSPGPV
GPLGKQGDRGEPGSQGPAGPPGSAGARGIAGPQGPRGDKGEAGEPGERGQKGHRGFTGLQ
GLPGPPGPAGDAGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPIGPPGPRGRSGETGPA
GPPGNPGPPGPPGPPGPGIDISAFAGLGQTEKGPDPLRYMRADEASSSLRQHDIEVDSTL
KSLNNQIENLRSPDGTKKNPARSCRDLKLCHPGWKSGDYWVDPNLGSTADSIKVFCNMET
GETCVYPTIPNVPKKNWWTSKSKERKHVWFGETMNGGFHFSYGQDGPAANIQLTFLRLLS
TEASQNITYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKSHS
GRWSKTVFEYKTQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggatgatcaggaggcaggtggctgtgtccaggaa
gcccagcagtataatgataaggaggtgtggaagccagagccgtgccgcatctgtgtgtgt
gacagtggagcggttctgtgcgatgagatactctgcgaggaggtcaaagagtcatgcacc
aaccctatcatcccacctggagaatgctgccccatctgccctgctgatgccactgcccct
tttgaggcgtttggtgctaagggtcagaagggagaaccaggagagattgcagatgttgta
ggacctagaggaccaccgggccctatgggaccttctggtgaacagggaccacgtggagaa
gctggcgcaaagggcgacaagggaagtcccggaccaagaggaagagatggcgaacctggc
gtacctggcaaccctggaccccctggaccacctggaccaccaggtctcggaggaaacttt
gctgctcagatggccggaggttttgatgaaaaggccggaggtgctcagatgggtgtgatg
caagggccaatgggtcccatgggtccacgtggtccccctggacctaccggagctcctggg
ccacagggtttccaaggtgcaccaggagagactggagaaccaggccctgctggaccaatg
ggacctcgtggaccgcctggaccatctggaaaaccaggaagtgatggggaccccggcaaa
cctggtaaagctggtgaacgtggacctgcagggcctcagggagctcgtggatttcctgga
acacctggtcttcctggaataaaaggacacagaggtcaccctggtctggatggagctaaa
ggagagactggtgctgcaggagccaagggtgaagccggtgcagctggagaaaatggttcc
cctggaccaatgggcccacggggtctgcctggtgagaggggacgccctggtgcttccgga
gctgcaggtgcccgtggaaatgatggcttgcctggtcctgctggtccccctggcccagtt
ggtcctgctggagctcccggtttcccaggatccccaggagcaaagggtgaagctggtcct
actggtgcccgtggagctgaaggacaacagggaccacgtggagaggctggtactccagga
tctccaggaccagctggggcatcgggtaaccctggaactgatggcattcctggagctaaa
ggttctgctggtgctcctggtattgctggtgcccctggattccccggtcccagggggcca
cctggaccacagggagcaactggacctcttgggcccaaaggacaatctggagaccctggt
cttccagggttgaagggtgaaactggaccaaagggagagcttggccctgctggtcctcaa
ggggctcctggccctgctggagaagaagggaagaggggtgcaaggggtgagccaggaggt
gctggaccaatcggacctcctggagaaagaggagctcctggtaaccgtggtttcccaggt
caggatggtcttgctggtgctaagggtgcacccggtgaccgtggtgtccctggtgccgct
gggcctaaaggagcgactggagatcctggtcgtacaggcgagcccggccttccaggagcc
agaggtcttactggtcgtcctggagatgctggtccccaaggcaaagtcggagcttctggt
gctcctggtgaggacggtcgtcctggtcctcctggccctcagggagcacgtggacagcct
ggagtgatgggattccctggaccaaaaggagctaatggtgaacctggaaaggcgggagag
aagggacttgttggtcgacctggtctaagaggtctacctggaaaagatggtgaaactggt
ccatctggacctcctggacctgctggacctgctggggagagaggagagcaaggacagcct
ggacctcctggcttccagggtctgcctggaccaactggttccccaggagagtctggaaaa
cctggagatcagggtgttcctggagaaggtggagctccaggtgctgttggacccagaggt
gagcgtggtttccctggtgagaggggtggtgctgggcctcagggtcttcaaggaccccgt
ggacttcctggaacacctggaagtgatggacccaagggtgctattggaccagccggtgcc
cctggagctcagggacccccaggtctgcagggtatgcctggagaaagaggagccggtggt
atcccaggagccaagggagatagaggtgacaacggacagaaggggcctgaaggtgctcca
ggaaaagatggtgctaggggtttgactggtcccataggtcctcctggcccatctggacca
aacggtgccaagggtgaaactggacctactggtcctactggtgctcctggggtccgtggt
gctcctggtgaccgtggtgaggttggtcctcctggacctgctggctttgctggacctcct
ggtgcagatggtcagccaggtgccaagggagagctcggagagtctgggcagaagggagaa
gctggtgctcctgggcctcagggaccatctggagctccaggaccagtgggccctactggt
gtagcgggacctaagggagcacgtggtgctcaaggagctcctggtgctacaggtttccct
ggtgctgctggcagagttggacctcccggtgctaatggtaaccctggccctcctggtcct
gctggtccttctggtaaagatggtccaaaaggtgtccgtggtgatgccggccctccagga
agaccaggagatgctgggctccgtggacccgcagggcctccaggagagaaaggagagcct
ggagaggatggacctcctggtgctgatggtccttcaggtcctcagggtttggctggatcc
cgtggtattgttggtttgcctggtcagcgtggtgagagaggcttccctggtctccctgga
ccttctggagaacctggtaaacagggatcccctggtggtgctggtgaccgtggaccacct
ggacctgtcgggcctcctggactcactgggcctgctggagagcctggcagagagggaacc
cctggatccgatggacctcctggaagagatggagctgctggagttaagggagagcgaggt
aacacaggtcctgcaggcgcccccggagctcctggagcccctggttctcctgggccagtt
ggacccctcggcaagcagggagatagaggagagcctggttctcaaggacctgcaggtcca
ccaggatcagctggtgctagaggaattgctggaccccaaggaccacgtggagataaggga
gaggcgggcgagcctggagagagaggacagaagggtcatcgtggcttcaccggtctgcag
ggtcttcctggacctccaggtcctgctggtgatgccggagccgccggacctgctggacca
agcggagctaagggaccccctggtccagttggacctgctggtaaagacgggtctaatgga
cagcctggccccattggacctcctggacctcgaggacgttctggagaaacgggccctgct
ggtcctcctggtaaccctgggccccctggtcctcctggtcctccaggcccaggtattgat
atctctgcctttgctggtttgggtcagactgagaaaggccctgatcctctcaggtacatg
agggctgatgaggcctctagctccctgaggcagcatgatattgaagtcgattcaactctc
aagtccctcaacaaccagattgagaatttgcgcagccctgacggcaccaagaagaaccct
gctcgctcttgcagagacctcaagctgtgccaccctggctggaagagcggtgattattgg
gttgatcctaacctgggctccacagccgactcaatcaaggtcttctgtaacatggagact
ggagagacctgtgtctacccaaccattcctaatgtaccaaagaagaactggtggaccagc
aagagcaaggaacgcaaacatgtctggttcggggagacaatgaatggtggcttccatttc
agctatggccaggatggtcctgctgccaacatacagctaaccttcttgaggcttttgtcc
actgaggcatctcagaacatcacttatcactgcaaaaacagcattgcatacatggatcag
gcctcaggaaaccttaagaaggcattgctactgcagggctccaatgatgtggagatccgc
gcagagggcaacagtcgattcacatacagtgtgctggaggatggttgcaagagtcactca
ggccggtggagcaagactgtcttcgagtacaaaacacagaaaacctcccgtctgccaatc
gtagacattgctccaatggacatcggaggagcaaatcaagaatttggagtggatgtaggc
gccgtctgcttcttgtaa
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integrated database retrieval system
