Cyprinodon variegatus (sheepshead minnow): 107095588
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Entry
107095588 CDS
T06110
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107095588 (taf1c)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
107095588 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Arc_capsid_dom
Motif
Other DBs
NCBI-GeneID:
107095588
NCBI-ProteinID:
XP_015247226
Ensembl:
ENSCVAG00000007881
UniProt:
A0A3Q2CLZ6
LinkDB
All DBs
Position
Unknown
AA seq
978 aa
AA seq
DB search
MDHQFPPRLFPSFYNRGPPEQLPRGRSGGWGAYGGVSAQGGSGPLSSWTFTSRRRVDGEV
WRQTEPLPVPLLSPRKAFQEYLTPPDPMDFLSHLQNFFIDDGLDAFRCTSEVLGENFYFK
KAKKKEKYRQGSVNMWRTKSYIDLLKYKPCPVSNPSRSLERFSSHMSDVVHDVPLELLGS
LLYEELTEQRERMQFSERSTGGALAYVPFSQSEGCLLYPGGLGMDRLHFHKVALQNSCMD
ASSSEPVSFQLKAPIRQISCGSVLGDCCVAVRSDYHCGVWRFGERKQPCLLQVVDAEAAA
TCVSVSPHVLGEVLVVSESGAANLWTVGRGLQKVRTEESNLYFNAKSPWRWCEFSAHPRV
MVYADRTGAELTDFRAKASGAHHTLFRISSTSDCRSGERLLLCRYLGDVNAFHHLVATQH
SAYVMDERFPCVPMLKCDHMMQAPPLFCHVASASDRGMGETTKVLLGSHSSQEITLLQYS
GGRLEACSSRGAPQALLRPSDSLTHLPVQIPHRQQAAAQRLASPAAGLTCFQKKGGAEDF
SLCVLQLTEVGDIFYQILERRPPAEDKSGAPEAQTSEQLQVSNPARHGDIITAAPETPDR
IVCLDSSTEGAEDERGTRKQLPVAFNDEPGLDAEVCGGEEVDRSSCWEAPLTISSSTAET
WKLWLQKLRLTGQNQNPEAVRPQNFVVQTAGLLQAADRDAGGELDEPLRREMKGCMRRRS
LLLNDSASIKVPLTVPALVNAEAWTDALSDRLTAAWRGEEEWQAWWRDQLGTNRKMKADA
LRRKRRMQKEARRAEGRRFQLSGSFTSSVSYQTDLDDPFESTGWSSAVSQGTLSDEEGGA
VLESEEDRTLPVTATPDPIRTTTPQKYTPSRPRPLPPTQPNTPQTPRANQRSWRPQDDFL
SSVWGTQDAPPQSEEPPQSEEPPQSEEPPPLPSSWFPSSQSGSLRPSLGSLPSSQASQSQ
RGPSQASQPKRKKSRMGF
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggatcatcagtttcctcccagacttttcccgtccttctataaccgcgggccgccggag
cagctgcccagaggccgcagcggaggatggggcgcctatggaggagtctcagcccagggc
ggcagtggccctctctccagctggacctttacatccagacggcgggttgatggggaggta
tggcgtcagacggagccgctgccggttcccctgctgtctcccaggaaagctttccaagaa
tatttgacgcctccagatccaatggacttcctgtcacatttgcagaacttcttcatagac
gatggtttagatgccttcaggtgcaccagtgaggtcctgggggaaaacttctacttcaag
aaagcaaagaagaaggagaaatatcgtcagggttcggtcaacatgtggaggaccaagagt
tacatcgatctgctgaagtataaaccgtgtcccgtctcgaatcccagcagaagtctcgaa
aggttctccagccatatgtcggacgtcgttcacgacgttcctctggagctgctgggctcg
ctgctctacgaggagctgacggagcaaagggagcgcatgcagttctcagagagatccacc
gggggcgccctggcctatgtccctttctcacagagcgagggctgcctgctgtaccctgga
ggcctgggaatggaccgcctccacttccacaaggtggcgctgcagaactcctgcatggat
gccagcagctctgagccggtgagcttccagctgaaggcgcccatccgacagatcagctgc
ggctccgtcctcggcgactgctgcgtcgccgtgcgctccgattaccactgcggcgtctgg
aggttcggtgagaggaagcagccgtgcctgctgcaggtggtggacgcggaagccgctgcg
acctgcgtcagcgtcagcccccatgttctaggtgaagttctggtggttagtgagagcgga
gctgccaacctttggacggttgggagagggctgcagaaggttcgaacagaagagagcaac
ttgtacttcaatgccaagtcgccatggagatggtgcgagttctccgcccacccgagggtg
atggtgtatgcagacaggacgggggcggagctaacagacttcagagccaaggcatcgggg
gcccaccacactttgttccggatcagcagcacctccgattgcaggagtggagagcggctc
ctgctgtgccgctacctgggggacgtgaacgccttccatcacctggtcgccacgcagcac
tcggcctacgtcatggacgagcgcttcccctgcgttcccatgctcaagtgtgatcacatg
atgcaggccccgccccttttctgccacgtcgcttcagcctcagaccgggggatgggggag
accactaaggttctgctcgggtcgcattcttctcaggagatcacactgctgcaatactcg
ggaggtcggttggaggcgtgctccagtcgcggcgctccccaggctctcctcaggccctca
gacagtctgacacacctccccgtccagatcccccaccgccagcaggccgcggcccaaaga
ctggcttcccccgctgcaggtctgacgtgtttccagaagaaaggcggagctgaggacttc
agcttgtgcgtcctgcagctgacggaggtgggagacattttctatcagatcctggagcgc
cgcccgccggcagaggacaaatccggagctccggaggcacagacatcagaacagcttcag
gtctccaacccagcgaggcacggcgacatcatcacagcggcgccagaaacgcccgacagg
attgtgtgtttggattcttccacagagggggcggaggacgagcgtgggactcggaagcag
ctgccggtcgccttcaacgacgagccgggtttggatgcggaggtctgtggcggggaggag
gtggatcgcagctcctgctgggaggcgccgctaaccatcagcagctccaccgctgagacc
tggaagctctggctgcagaagctcaggctgacgggtcagaaccagaacccagaggccgtc
aggccgcagaactttgtggtccaaaccgccggtctgctgcaagccgccgacagagatgca
ggaggcgagctggacgagccgctgaggcgggaaatgaagggctgcatgaggcggcgctcg
ctgctgctgaacgactccgcctccattaaagtaccgttaacggttcccgctctggtgaac
gctgaggcctggacagacgccctcagcgaccggctgaccgccgcgtggcggggagaggag
gagtggcaggcgtggtggcgagaccagctgggcaccaacaggaagatgaaggcagacgct
ctgaggaggaagaggaggatgcagaaggaggcgcggagggccgagggccgccgcttccag
ctgagcggcagcttcacctcgtccgtcagctaccagacggacctggacgacccgttcgag
tccacgggttggtcctccgccgtcagccagggcacgctgtcggacgaagaaggtggggcg
gtactggagagcgaggaagaccgcacgcttcccgttacagcgaccccagaccccatccgg
accaccacacctcagaaatacactcccagcaggccccgccccctacccccaacacaacca
aacaccccccagaccccaagagccaatcagaggagctggaggccgcaggacgacttcctg
agctccgtgtggggaacgcaggacgcgccgccgcagagcgaggagccgccgcagagcgag
gagccgccgcagagcgaggagccgcctccgctcccctcctcctggttccccagctcccag
tccggttccctcaggccgagcctcgggtctctgccgtcctcccaggcctcacagagccag
cgggggccatcacaggcgtcccaacccaagaggaagaagtctcggatgggattctga
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