Cyprinodon variegatus (sheepshead minnow): 107095705
Help
Entry
107095705 CDS
T06110
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107095705 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107095705 (sf3b1)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107095705 (sf3b1)
Spliceosome [BR:
cvg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107095705 (sf3b1)
Complex B
107095705 (sf3b1)
Complex C
U2 SnRNP specific factors
107095705 (sf3b1)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
107095705 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
107095705
NCBI-ProteinID:
XP_015247426
Ensembl:
ENSCVAG00000003680
LinkDB
All DBs
Position
Unknown
AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLQEENGEQGVGLVSTGFYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEDDTSTSLLGQKKPSFHAPVAMLNSIPQSDEQYDPFAEHRPQKIADREDE
YKARRRQMIISPERLDPFADGGKTPDPKMQVRSYVDVMMEQNLSKEEREIRLQLAEKAKS
GDLKAVNGSAASQAAAKRKRRWDQTADQTPSNATPKKLSSWDQADAGAETPGHTPAHTPS
NSRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVYVRYELEYAL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatatcgaggcccagatcctggagatccagggg
atgaaggcctccctgcaggaggagaatggagagcagggagtgggcctggtgtccactggc
ttttatgaccaggagatctatggaggcagcgacagccgttttgcaggatatgtcacctca
atcgcagcaaacgaacaggaggatgacgacgaagacgacacgtcaacaagcttactggga
caaaagaagcccagcttccacgcgccggtggcgatgcttaattctatcccccagtcagat
gagcagtacgacccctttgcagaacaccgtccacagaagatcgcagatcgggaggatgaa
tacaaagcccgtcgcagacagatgatcatctcgcctgagcgtctcgatccgtttgctgat
gggggtaaaacaccggaccctaagatgcaggtcaggtcgtacgtggacgtgatgatggag
cagaacctatccaaagaggagagggagatccgcctgcagctggcagagaaggccaaatca
ggagacctgaaggcggtcaacggctctgctgcctcccaggccgctgccaaacgtaagcgc
cgctgggaccagacagctgaccaaaccccgtccaacgccacacccaaaaaactgtccagc
tgggaccaggctgacgccggcgctgagactccaggacacacgccggcgcacacgccctcc
aacagccgctgggatgaaactcctggtcgtcctaaaggcagcgagaccccgggggccacc
cccagcacccgcatgtgggaccccactcccagccacacccccgccggcgcagctaccccc
ggcagggacacgcccggccacgccacgcccggccatggcggcgccacaggaagcgtccgc
aagaaccgctgggacgagaccccgaagacggagagggagacgcccggccatggcagcggc
tgggcagagaccccccgaacagaccgaggggaggagtctgtgggggagacccccacccca
ggggccagcaagaggaagtcccggtgggacgagacgccggccagtcagatgggatcctcc
actccactgctgaccccaggaaaaaccccgctgggaacaccggccatgaacatggccacg
cccactcctggtcacctgatgagcatgaccccagagcagctccaggcgtggcggtgggag
cgggagatcgatgagaggaaccgaccgctcaccgacgaggagctggacgccatgttcccc
gaaggctataaggttctacctcctccagcaggatacgttccgatccgaaccccggcccgt
aagctgtcggccacgcccacacccatcgggggcatgacgggtttccacatgcaggcggag
gaccgcaccaccaagcagatgaacgaccagccctcagggaacctccccttcctcaaaccc
gacgacattcagtacttcgacaaactgctggtcgaggtggatgaatcgactctgagcccg
gaggagcagaaggagcggaagatcatgaagctgttgctgaagatcaagaatgggaccccc
cccatgagaaaggccgctctgcgccagattacagataaagctcgggagtttggagcgggt
ccgctattcaaccagatcctgccgctgctcatgtcccccacgctggaggaccaggagcgc
cacctgctggtcaaggtcatcgaccgcatcctctacaaactggacgacctggtccggccg
tacgtccacaagatcctggtggtgatcgagccgctgctgatcgatgaagattattacgcc
agagtggaaggcagggagatcatctccaatttggccaaggctgccggcttggccaccatg
atctccaccatgaggccggacatcgacaacatggacgagtacgtgagaaacaccaccgct
cgagccttcgccgtggtggcctccgccctcggcatcccctccctcctacccttcctcaaa
gccgtgtgtaaaagcaagaagtcgtggcaggcgagacacaccggcatcaagatcgtccag
cagatcgccatcctgatgggctgtgccatcctgcctcacctgcgcagcctggtggagatt
atagaacacggtctggtggacgagcagcagaaggtgaggaccatcagtgccctggccatt
gccgccctggccgaagccgctacgccctacggcatcgagtccttcgactctgtgctgaag
ccgctgtggaaaggcatccggcagcacagaggaaagggtctggctgctttcctcaaagcc
atcggttatctgatccccctgatggacgccgaatacgccaactactacaccagagaggtg
atgctgatcctgatcagagagttccagtcacctgatgaggagatgaagaagatcgtgctg
aaggtggtgaagcagtgctgcggcactgacggcgtggaagcaaactacatcaaaacggag
atcctgccccctttcttcaagcacttctggcagcacaggatggctctggacagacgcaac
tacagacagctggtggacaccaccgtggagctggcgaataaagtgggagcagcagagatc
atctcccgcatcgtggatgacttgaaggacgaagcagagcagtacaggaagatggtgatg
gagaccatcgagaagatcatgggcaacctgggagccgccgacatcgaccacaagctggag
gagcagctgatcgacggcatcctgtacgccttccaggagcagaccacagaggactctgtg
atgctgaacggcttcggaacggtggtgaacgctctagggaagcgcgtgaaaccgtacctg
cctcagatctgcggtacggtgctgtggcgtctcaacaacaagtcggccaaagtccggcag
caggctgcggatctcatctcccgcaccgccgtggtgatgaagacctgtcaggaggaaaag
ctaatgggtcatctgggcgttgttctatacgagtacctgggagaagagtaccctgaagtg
ctgggcagcatcctgggagcgctgaaggccatcgttaacgtcataggtatgcacaagatg
actccacccatcaaagacctgctccctcgtctgacgcccatcctgaagaacagacacgag
aaggtgcaggagaactgcatcgacctggtgggcaggatagccgacaggggggctgaatac
gtgtcggccagagagtggatgaggatttgtttcgagctgctggagctgctcaaagctcac
aaaaaggccatccgcagagccacggtcaacacgttcggttacatcgccaaagccatcggg
cctcacgacgtgttggccaccctgctgaacaacctgaaggtccaggagcgtcagaaccga
gtctgcacgaccgtggccatcgccattgtggccgagacctgctcgccgttcacggtgctg
ccggcgctcatgaacgagtacagagttcctgagctgaacgtgcagaacggcgtcttgaag
tcgctctccttcctgttcgagtacatcggagaaatgggcaaagactacatctacgccgtc
actcctctgctggaggacgcgctgatggacagggatctggtccacagacagacggccagc
gccgtggtgcagcacatgtctctgggcgtctacggcttcggctgtgaggactctctcaac
catttactgaactacgtgtggcccaacgttttcgagacgtctccccacgtcatccaggca
gtaatgggggccctagaggggctgagggtggccctcgggccctgccgcatgctgcagtac
tgcttacagggtctgttccatcctgcccgcaaggtgagggacgtctactggaagatttat
aactccatctacatcggctcccaggacgcgctgatcgctcactacccgcaggtctacaac
gacgagaaaaacgtctacgtgcgctacgagctggagtacgctttgtaa
DBGET
integrated database retrieval system
