Cyprinodon variegatus (sheepshead minnow): 107095874
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Entry
107095874 CDS
T06110
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107095874 (ddx1)
03016 Transfer RNA biogenesis [BR:
cvg03016
]
107095874 (ddx1)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107095874 (ddx1)
Spliceosome [BR:
cvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107095874 (ddx1)
Transfer RNA biogenesis [BR:
cvg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107095874 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
DUF5766
CMS1
DUF1667
Motif
Other DBs
NCBI-GeneID:
107095874
NCBI-ProteinID:
XP_015247722
Ensembl:
ENSCVAG00000020927
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRASVKTGGPIFNTWQMNPYDRSPAFAIGPDGMCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSTGQAALDLGTDKFGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQISFSKNGIDLGVAFDIPPNVVNQGFFAACVLKNAELKF
NFGGEDFKNPPKAGFVALDQAPDGHTIKSSQTGSAKVTQVKTSTNLPKALIIEPSKELAE
QTFNNVKHFKKYVENPKLRELLVIGGVPAKEQLAILEQGVDIVVGTPGRLDDLVSTGKLC
LSQVRFLVLDECDGLLSAGYTDFINRIHKQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADRLWERLGKNHIQTDEVHAKDNTRPGAN
TPEMWSEAIKMLKGEYAVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKGHQF
SCVCLHGDRKPNERKNNLDRFKRKEVKLLICTDVAARGIDISGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLS
EIEEHLKCTITQCDTDIKVPVDEFDGKVTYGQRRALGGGNYKGHVDVLAPTVKELALLER
EAQTSFLHLGYMPNQPFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagctttttcggaaatgggagttatgcctgaaatcgcgcaggctgtggaggagatg
gattggctgttgccaacagacatccaagcggagtcaattcccctgattcttggtggaggg
gatgttctcatggcagcagaaactggtagtggaaagacaggggccttcagtatcccagtc
atccagatagtctatgagaccctaaaggatcagcaggagggcaagaagggcagagcttct
gtcaaaactgggggtccaattttcaacacctggcagatgaatccatatgatcgtagccca
gcctttgcaatcggtcctgacggaatgtgctgccagagcagggagttcaaagagtggcat
ggctgtcgctccaccaaaggagtgaccaaagggaagtattactatgaggtgacttgccat
gaccagggactttgccgcgtgggttggtctactggtcaagctgctctggatttaggaact
gataagtttggttttggtttcggtggaactggaaagaaatccaataacaagcagtttgac
agctacggggaggaatttaccatgcacgacactatcggatgctacctggatttagataaa
gggcagatctccttctctaaaaatgggatcgacctgggagtggcttttgacatccctcca
aatgtggtgaatcaaggttttttcgctgcttgtgtcttaaagaacgctgagctgaagttc
aactttggaggggaagactttaaaaacccccctaaagctgggtttgtcgccttagatcag
gcaccagacggtcacacaatcaaatcctcccagacaggcagtgccaaagtgactcaagtg
aaaacttcgactaacttacccaaagctttaattattgagccgtccaaagagctggcagag
caaaccttcaacaatgtgaagcactttaagaaatatgtggaaaatcccaaactaagggag
cttctggtgattgggggggttccagccaaagagcagttagcaattctggagcagggggtt
gatatagtggtaggaacacctggaagactggatgaccttgtttccaccggaaaactctgt
ctctcccaagtccgtttcctggtcctggatgagtgtgatggtctcctatcagctggatat
accgactttatcaacaggatccataaacaaatccctcaggtcacctctgatggcaagaga
ctgcaggtcattgtgtgctcagccacactgcactcttttgacgtgaagaagctctctgag
cgcatcatgcattttcctacttgggtcgacctgaaaggtgaggactctgtcccagagacc
gtccaccacgtggtggtgcctgtcaacccgaaggccgaccgactgtgggagcgcctcggc
aaaaaccacatccagactgatgaagttcatgccaaagataacactcgacctggagccaat
acaccagaaatgtggtcagaagctatcaagatgctgaagggcgagtacgcggtcagggcc
atcaaagagcacaaaatggaccaggccataatcttctgccgcaccaagatcgactgcgac
aacatggagcagtatttcatccagcaaggaggaggtccagacagtaaaggtcaccagttt
tcctgtgtctgccttcatggcgaccgaaagccgaatgagcgaaaaaataacttggatcgc
ttcaagagaaaagaagtgaagctgctgatctgcaccgatgtggctgcgagaggaatcgac
atcagcggcgttccttacgtgattaacgtcaccctgcctgatgagaagcaaaactacgtc
catcgtatcggcagagttgggagagctgagagaatgggtcttgctatctccctggttgct
atggaaaaagaaaaggtatggtaccatgtttgcccaaaccgaggcagaggctgctataac
acccgcctgaaggaggacggaggatgcaccatatggtacaacgagaaagagcttctgtca
gaaatcgaggagcatctgaagtgcaccatcactcagtgtgacaccgatattaaagtccct
gtggatgagtttgatggaaaagtgacttatggacagcgcagagctctgggaggcggaaac
tataaaggccacgtggatgttctggccccgacagtcaaggaattggctctccttgaaaga
gaagctcaaacatctttccttcatttaggatacatgcctaaccagccatttagagccttc
taa
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