Cyprinodon variegatus (sheepshead minnow): 107096106
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Entry
107096106 CDS
T06110
Symbol
nup214
Name
(RefSeq) nuclear pore complex protein Nup214 isoform X1
KO
K14317
nuclear pore complex protein Nup214
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107096106 (nup214)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107096106 (nup214)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107096106 (nup214)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_NUP159_NUP214
Nup214_FG
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_EML_2
WD40_CDC20-Fz
ANAPC4_WD40
WD40_Prp19
Beta-prop_IFT140_1st
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
107096106
NCBI-ProteinID:
XP_015248098
LinkDB
All DBs
Position
Unknown
AA seq
1962 aa
AA seq
DB search
MGDDGDSPPEREMKDFQFRQMKKVRVFEATEDFPKERSSLLTVSNKYGLTFVGLGQTFKV
YLTQNILAADQADRNSHEVETGIQPLAEVTGNLILHHLALSCDELTLSVCGTSEKAGLSI
AFYDVRTFLNKARPQKSPFASLQPAAASDALVQDLKWNPAQPSMLASCLSDGSMMILEVT
DCVKIQAQLPAGSGITCLGWSPKGKQIAVGKMNATVSQYTPALEEKRVIPCPPFYTSDDP
VKALDVLWLRTPVFAVAYAAADGSLETPPELVLISLPKRDERPEPKYVNFGESVYGSCTE
RQHHYFLSHIEDWDLLLAASAASIEVSVIARQDDKMWEVWLLEDASRAELPVTETNDDTL
PLGLAIDYTSQQAIQITDERTLPPAPTMLMLSTEGLLCPFALLNLNPGVKQLVSPSTALT
LEGERQPKPGSLATQPDTSASSTPVAFPNIPLASVSSTSSTPAVSSSTVPFSFVPTAPVS
SASSGFTFSVPTTYSTTSAPPTLSLGGSGPFGSASSSFSFASKPPSETPSASSAFSFNSP
SLKPAAAPAQAPAATPPTLTAASLPPVKLNLNDRFSSVESPAPAFSFNSTLPKVTASSSS
TASSVSLPATKPPVVLSKENHSPLRPVQPGAPPTSVQKPAPATGRAQPPQGSVGMKNLEK
QQKKETDPIMTGILEEIAHFQKELDDLKARSVKADFKVGSNDKMKELRKESEDLHIFTLE
IKETTESLHGDIGTLKTNLLEGFAGAEEAKTQSELSKDRNYRQLLYKKPLDPRSEEQLKE
IRILYQYVMFAVEDVNDVLDVEWEKHLERKKKQKHMVVPGREGLFTTLSNNLYIINQQKK
RLEQLIQELTSLRLYSKSTSSAINQSIASGSTDSFGRELENLKDALLKARLDVSPPKTKA
KPSAVKISPVKQSQLRNFLSKGQMPPVRSTAPANLSRSAFLSPKYYEDLDDASSTSSLSQ
SLEPHPSHLDQEEEELKPLQPPAMTLSTPRHPTVVRTPSIQPGFGGIQSTPLPKIHSAPT
LGFGLSPIPSPVPTNMINLSGAESTALATKTVKHGAPPTGRTVPVTMSAQQAAASAAMRR
QMATQKTAPVGSTLTESTLKTVPQVVNVQELKEKGPPVSSIVSSSVPDFTNQVFSNQVKR
TTTPGIPKVSAETASSLQPGFVFGQPSKTDISVPTSSVEQSNNKPFSFTPGSTGFNFTPA
PQAGLTQVKDSNKFSFGGNGKMTLGQTGEEPFSLTPKSAASGTGTGSPTLNLSTSGEVAK
HGPLSTAFKTESQPPKTSGGETLGSFSGLRVGQGEEVKDSGTKPAAAFTFGETGLGNGKG
VQAFSFGSGLPKSAEGSATTDLSKGASSNSLFKPPETNSKPAFSLPPSSSAPSLLPSSFS
SLLTVPSEESKAPPQLSEPTPPPEKDPVTTEPSEQSTSRPVAPEPAVDSTSNPSTPALPS
VITAPTQDLSSTSVAPAEATPPPPSSVPSTTEATPVPSSTPPDSSLVVPSAPSVSQEAPP
AFQVPASEKPGSIFTQPAPVTTNSSSIGATLIINTAVPAATTTTPATVSTAQTTVANTIF
GQPAAPPASSAPAATGFGSSAFGASAGATFNKSVFGQASGFGQPASSAGSSSGFSFTQSA
FGASSSSATTGGPGLFGAVTPSSASSFSFGSASANTASSTGSGLFKQSTPPVFGQSSGFG
QPSVFGSNTTTSSSSGFGFGQPSGFGCSAATPVFGQQSSNGSVFGQQTSGGGLFGSSAAN
TAGSSSGGFFSGLGGKPSEDAANKNPFGTTASTGAFGQVAQPGSNSLFGNSGAKTFGFNT
STFGEQKASGTFTTGAGSVASQGFGSFSSPTKPGGFGSGPVFGSPPSFGGSPAFGGTASF
GANPAFSSPMTSSTGKVFGEGTAAANMGGFGFSSPPSAPSFGALASQSAPTFGNLAQQGN
AFGSQPSSFSGFGQQPQTGGFSGNAFGSGSQSSSQTFSSWRS
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgacggagactctcctcccgaaagggaaatgaaggattttcagtttcgacag
atgaagaaagtacgagtttttgaggctactgaagatttccccaaagaaagatccagtctt
cttactgtctcaaacaaatatggtttgacatttgttggccttggccaaacatttaaagta
tacttgactcaaaatattctcgctgctgatcaagctgatcggaactcccacgaagttgaa
actgggatacagccactggctgaagtgactggaaacctgattttgcatcacttggctctg
agttgtgatgaactcactttgtcggtttgtggcacatctgaaaaggccggtctgtccatc
gcattttacgatgtccgaacctttttaaataaggccagacctcagaagtcaccgtttgca
tcattgcagccagctgcagcttctgatgctttggttcaggacttaaagtggaaccctgct
cagccttccatgttggcatcctgcctgtctgatggcagcatgatgattcttgaggttaca
gattgtgtcaagatacaagcccagctaccggctggcagtggcatcacatgcctgggttgg
agtccaaagggaaaacagatagctgttggaaaaatgaatgccactgtgtctcagtacaca
ccagctctagaagaaaagagagttatcccatgtccaccattttacacttctgatgacccc
gtcaaagctctggatgtgctttggctaagaacacctgtgtttgctgtggcttatgctgct
gctgatgggtctcttgagacccctcctgagctggtgctgatctccctccctaaacgggat
gagagaccagagccaaagtatgtgaacttcggtgagagtgtttatggcagctgtacagag
cgacagcatcactacttcctgagtcatatagaggactgggacctgttgttggctgcatca
gcggcatctatcgaggtcagcgtgattgcaagacaagatgacaagatgtgggaggtttgg
cttctcgaagatgctagtagagcagaacttccagtgactgagacgaatgacgacactctg
cctcttggcttggctatagactatacaagccagcaagcgatccaaatcactgacgagagg
actctgcctccagcacctacgatgctaatgctgtccacagagggattactttgcccattt
gctcttctaaacctgaatccgggggttaagcagctagtatcaccatctactgctcttacc
ctggaaggagaaaggcagccaaagccaggttccttggcgacccaacccgatacctcagcc
tcatcgacgcctgtcgccttcccaaacatccctcttgcatccgtttcttccacttcatct
actcctgctgtttcctcctccacagtccctttcagttttgttcctacagctcctgtttct
tccgcttcatctggatttactttctcagttccaaccacctattccaccacctcagcccca
ccaacgctctcccttgggggttctggaccttttggctccgcatcctcaagtttttctttc
gcttccaaacccccttctgaaacaccgtccgcttcttcagccttttcattcaattcccct
tccctgaaaccagcagctgcaccagcacaagccccagctgcaacacctccgaccctcact
gctgcctctctccctcctgtcaagttaaatctaaatgacagattttcctctgttgagagc
ccagcaccagctttctcctttaattccaccctgcccaaagttactgcttccagctctagt
acagcaagcagcgtttccctcccagccaccaagcctcccgttgtattaagtaaggaaaac
cactcaccattgcgcccagttcagccaggtgctcctccaacctctgttcagaaacctgct
cctgccactgggcgcgcccaacctccacagggatccgtcggcatgaagaacctggaaaaa
cagcagaagaaagaaacagatccaattatgactggtattttggaggagattgcacacttc
cagaaagagttagatgaccttaaggctcgcagtgttaaagccgacttcaaggttggtagt
aatgacaagatgaaggagctgagaaaagaatcagaagacctccacatcttcaccctggaa
atcaaagaaaccacagagtctctccatggggacattggcactttgaagaccaatttactg
gagggttttgccggggcagaagaagccaaaactcagagtgagctgagcaaggacaggaat
tacagacaactgctctacaaaaaacctctggatccacggagtgaagaacagctcaaggag
attcgcatactttaccagtatgtcatgtttgctgtggaagatgttaatgatgtcttagat
gtggaatgggaaaaacacctggagagaaagaagaaacagaaacacatggttgtgcctggc
cgtgagggtttgtttactactctgtccaacaacctgtacatcatcaaccagcaaaaaaaa
cggttggaacagcttattcaggaactcacatcgctgcgcctttacagtaaaagtacatct
tctgccatcaaccagagcattgcaagtggctctacagatagttttggaagagagcttgag
aatttaaaggatgccctcctaaaagcccggctggatgtttctccccctaagacgaaagcc
aaaccttcagcagtcaagatatcaccagttaaacaatcccaacttcgcaatttcctctca
aaagggcagatgccgcctgtgcgctcaactgcaccagccaacctgtctcgttcagcattc
ctttcgcccaaatactacgaggacctggatgatgcaagctcaacgtcatccctgtcccag
tccttggagcctcacccatctcatttggaccaggaagaggaagaattaaaaccactacaa
ccccctgctatgacgttatccactcctcgccaccctacagttgtcaggaccccttctatc
caaccaggctttggaggcattcagtccacccctctaccaaaaatccactctgcaccaact
ttgggatttggactcagtcctattccaagtccagttcctaccaatatgatcaacctcagt
ggcgctgaaagcactgctcttgccacaaagacggtaaaacatggcgctcctcccactggg
agaactgttcctgtcaccatgtctgcccagcaggctgcagccagtgcagctatgcgcagg
caaatggcaacccagaagacggctcctgttggtagtaccttgacagagtccaccttaaag
actgttcctcaagtggtcaatgttcaagagctcaaggaaaaggggcctcctgtttcttcc
atcgtcagctcttctgtacccgatttcacaaatcaagtcttttccaaccaagtcaaacga
actaccaccccggggatccctaaggtctctgctgaaactgcatccagtctacagccaggc
tttgtttttggtcaaccatccaaaacagacatctctgttccaactagttctgtggaacaa
agcaacaacaagccattctccttcacaccagggtcaacaggctttaactttacacctgcc
ccacaagctggactcacacaagttaaggattcaaataaattctcttttggcggaaatggc
aagatgacgttgggtcagactggagaagagccgttctctcttaccccaaagtctgcagct
tctggtactggcactgggtctcccacactgaatttaagcacatcaggggaagtggccaaa
cacggccctctgtccacggccttcaagacagagtcacagccaccaaagacctcaggagga
gaaaccctcggcagtttttctgggctgcgtgttggtcaaggagaagaggtcaaagattct
ggaacaaagccagctgctgcattcacctttggagaaactggactcggcaatggcaaggga
gtacaagccttcagctttgggtcaggtctcccaaagtctgctgaaggttctgcaactaca
gatttgtctaagggtgcctcatcaaacagtttgttcaaacctcctgaaacaaactccaag
ccagctttctctctccccccatccagctctgcaccttcactcttaccttcatctttcagt
agccttctcaccgtgccttcagaggaatcaaaagctcccccacagctttcagaacctacc
ccaccccctgaaaaagatccggtcaccactgaaccatctgagcaaagtaccagtcgccct
gttgctcctgagcctgcagtggattctacatccaatccatccacacctgcacttccttct
gtgataactgcccctacccaggacctttcttctaccagtgttgcaccagctgaagcaacc
cctcctccaccttccagtgtgccttccacaacagaagccactccagttccctcatccact
cctcctgattccagtttggttgttcccagcgccccatcagtctcccaggaagccccccca
gctttccaggtgcctgcctctgaaaaaccagggtccattttcactcagcctgctcctgta
acgacaaacagcagctccattggagccactctaatcatcaacactgctgtccctgcagcc
accactaccactcctgcaacagtgtccacagcacaaactactgttgccaacactatcttt
gggcaaccggctgcacctcctgcctcctcggcccctgcagcaacaggatttggctcatct
gcatttggtgcttcagctggagcaacttttaacaaatccgtctttggccaggcgagtggc
ttcggccaacctgcaagcagcgctggatcatctagcggcttttcttttacccagtctgca
tttggagcaagttctagcagtgcaacgaccggaggaccaggtcttttcggggcggttacc
cctagcagtgcaagttcgttctcctttggcagtgcaagtgccaatacggccagcagtact
ggatctgggctcttcaaacaaagcacgcctcctgtatttggtcagagttctggatttgga
cagccatccgtttttgggagtaacaccaccacatcctcttcttcgggattcggttttggt
cagccctcaggatttggttgctctgctgccacccctgtatttggccaacaatcttcaaat
gggagtgtatttggacagcaaacatctgggggaggtttgtttggttccagtgcagccaat
acagcaggttcatccagtggaggattttttagcggcctcgggggtaaaccaagtgaggat
gctgctaacaagaatccgtttggtaccacagcttcaactggagcatttggacaggttgct
cagcctggatctaatagtctctttgggaacagtggtgcaaagacatttgggttcaacacg
tcaaccttcggggaacagaaagccagtgggactttcaccactggagcagggagtgttgca
tcccagggctttggttccttttcctcaccaactaaaccaggggggttcggcagtggtcca
gtgtttggaagtcccccttcttttggtggttccccagcatttggtggcacagcatcattt
ggcgcaaacccagctttcagcagtccgatgacttcctcaactggtaaagtgtttggagag
ggaacagcagctgccaacatgggaggatttgggttctcttcgccccccagtgccccttcc
tttggcgccctggccagtcaaagtgctcctacatttggcaacttggcccagcaaggcaat
gcgtttggaagtcagcccagcagcttctcaggctttggacagcagccacagactggagga
ttctcaggaaatgcatttgggtctggaagccagtcgagttcccagacattttccagctgg
agaagctaa
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