Cyprinodon variegatus (sheepshead minnow): 107096189
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Entry
107096189 CDS
T06110
Symbol
usp40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40 isoform X1
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cvg01002
]
107096189 (usp40)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvg04121
]
107096189 (usp40)
Enzymes [BR:
cvg01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
107096189 (usp40)
Peptidases and inhibitors [BR:
cvg01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
107096189 (usp40)
Ubiquitin system [BR:
cvg04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
107096189 (usp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
YukD
DUF7725
CDC37_C
WH_Egal
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
107096189
NCBI-ProteinID:
XP_015248225
Ensembl:
ENSCVAG00000003361
LinkDB
All DBs
Position
Unknown
AA seq
1282 aa
AA seq
DB search
MFGNLFEEEEDEGFASTSNKGRTAKGGEEPPPPPRGRSNLCGIKNQGGTCYLNSLLQTLL
FTPEFREELFSLGPEELGRLEDKDKPGAKVRVIPLELQRLFARLLLIDHQSASTTDLTDS
FGWNSSEGTNQHDVQELNRILFSALEHSLVDTSGSTLIQRLYHGTIVNSIVCKECGNVSQ
RKEDFLDLTVCVCGVSSLEEALWNMFVEEELFEGNNLYRCAQCSRLVTAAKSAKLEQLPP
FITMSLLRFSFDFAKCERYKETGRYTFPLTINLRPFCEQSDAEDSDFTYELFSVIIHKGG
CYGGHYHVYIKDIDELGLWEPPEDDCKPKAQKKIEKEVKESSEQNLQEDDPLSIITAIIA
QESSKSVLLDQLGQKLLDKTGSSWSKRFRKHYGPIGKFLQSHSDVFILVSNGSRVALKAN
PPSQVTDTSASASEQTVTSDPSAASDRAASDTQQEANQTHKAQPEQGSHWFDLNDSAVTS
IRESDIEKQFQGKESAYMLFYRKTQLHRPGEALNNPQYKVPTQLIQMAQDENRRLQQMRE
EFEAANNTVELRLHLAPFYKMVDGVLQPVGEDQSGSINLSFDRRKTVGDLRITIYHKQEL
WEGDMALTVAKSLPAGLHLYNTLTDDGVSLYGAGIHTNTDLFVWNGMEVCGSAVQTGAEW
EPVLLTVVRPFLGEDVGQEVQNGVKCEKNGTGSENVGPGLKREARGFAGGATLGEVREAL
GEPRESLLCQEHKRGKVGGQGAGEGGGASGWRVFPPDDMQRTLKELSLKDGDALLVLEPH
SFDSSVFTRNGDVVTVTTPSDCRWLQVEFRPLINRDEEELRKTVKVPATGNMLLSEVKQR
AIEELQLLEEPSGSPYCLRQVDCSGKLLPPVFEELSVRDAGVRLMTTLTLCPGNAPKESQ
LFLHFTVGSAPSAGMEMDIIVEKTCTVKECLKAMLDAVGLDGTSWHLRRLDWCEEVGEPL
MDEDASLSDLKISNGETLVVTEGLLPPKGFLKLSVWLFMDLRSNCTEGSPAEQRMWETDA
TDGFCAPLLHGENMVELRNIGKVEISDDAMLEDLKTQVLTLPALQDVCVPVTSFLRVWQM
DGGRPTRILRGQQVTLRKLKLTSETDLCVQGLLKEEDLGPKQVLLNVKMGVPGERRYYPT
EELVWDTSKDSSPRSLRTSLAAHYGLSPDSLLLAKHQPEKHTWEEISNWTQQFSKKKKKK
KAESLLGPPFNLRDGDVIGIKNLLIDNNRDFITEEDQQGQQRLREQAEQRRKGAQAAASN
GAGKNKPRKVEVPLSISVGEFR
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgtttggaaacctttttgaggaggaagaggacgaagggttcgcctcgacctccaacaaa
gggaggactgctaaagggggcgaggagccaccgcctccaccccgaggaagaagcaatctg
tgcggcattaaaaatcagggagggacctgctacctcaactctctgctccagactctgctg
ttcaccccagagtttagagaggagctgttcagtttgggaccagaagaattggggcgtctt
gaggacaaagacaaaccaggagccaaagtcagggtgattcctctggagctccagcgattg
tttgcccgtctgttgctaatagaccatcagagcgcctccaccactgacctcacagacagc
ttcggctggaacagcagcgaggggacgaatcagcatgatgtgcaggagctcaacaggatt
ttgttcagtgcattggagcactcccttgtggacaccagcggcagtacattgatccagcgc
ctctaccatggtaccatcgtcaacagcattgtgtgtaaggagtgtggaaacgtgagccag
aggaaggaggacttcctggatttgacagtgtgtgtttgtggcgtgtccagcctggaggag
gctctgtggaacatgtttgtggaggaggagttgtttgaaggaaacaacctttatcgttgt
gctcagtgctccaggttggtcactgcggccaagtcggccaagctggagcagctgcccccg
tttatcaccatgtctttgctgcgattcagctttgactttgccaaatgtgaacgatacaag
gagaccggacgctacaccttcccgctcaccatcaatctgagaccattttgtgagcagtct
gatgcagaggactctgatttcacatatgaactgttttccgtgattatccacaaaggaggc
tgctatggcggccattaccatgtttacatcaaagatatcgatgagcttggactgtgggag
ccgccggaagatgactgcaaaccaaaagctcaaaagaaaattgagaaggaagtcaaggag
tcatctgagcaaaacctacaagaagacgaccctttgtctattattactgcaatcattgct
caggagtcttcaaaaagtgttttattggatcagctgggtcaaaagcttctggataaaact
ggatcatcctggagcaaaaggtttagaaaacactacggtccaattggaaagttcctgcag
tctcacagtgacgttttcattttggtgtccaatggatcccgggtggcactgaaggcaaac
cctccaagccaagtgactgatacctctgcttctgcatcagagcaaaccgtgacctctgac
ccttcagcagcttcagacagagccgcctctgatacgcagcaggaggcaaatcaaacgcat
aaagcacaaccagagcagggtagccactggtttgacctgaatgactcggctgtgacttcc
atcagggagtcggacatcgagaagcagttccagggcaaagagagcgcctacatgctgttc
tacagaaaaacacagctgcacaggcccggcgaagctctaaacaatcctcaatataaagtt
cctactcagctcatccagatggctcaggatgagaaccggaggctgcagcagatgcgtgag
gagtttgaagccgccaacaacacagtggagctgcgtctgcacctggcccctttctacaaa
atggtggatggagtcctgcagccagtcggcgaggaccaaagtggaagcattaacctgagc
ttcgaccggaggaagaccgtcggagatctgaggataactatttaccataagcaggaattg
tgggaaggcgatatggcgttgacggtagccaagagcctacctgctggtttacacctctac
aatactctgacagatgacggcgtttctctctacggtgcaggaatccacacgaatactgat
ctgtttgtctggaatgggatggaggtttgtggctccgcagtccaaactggagctgaatgg
gaacctgtattactcactgtcgtccgtccgtttctgggcgaagatgttgggcaggaagtg
caaaatggggtgaaatgtgagaaaaacggaacaggctctgaaaatgtcgggccaggactg
aaaagggaagctagggggtttgcggggggcgcaactcttggggaggtgagggaggcactt
ggggagccgagggagagcctactgtgtcaggagcataaaagaggaaaggtgggaggtcag
ggggcgggggagggagggggtgcgagcggatggagggtgttcccgcccgatgacatgcag
cggactttaaaggagctgtcgctgaaggatggagatgctctgctggtgttggagccgcac
tcattcgacagcagtgtgttcacccgaaatggagatgtggtcactgtgactacgccgtca
gactgccgctggctccaggtggagttccgaccactaataaacagagacgaagaggaacta
aggaagactgtaaaggttccagccacaggaaatatgctgctatctgaagtgaaacaaaga
gccatagaggagctgcagctgctggaagaaccttcaggttcgccgtactgtctgaggcag
gtggactgctctgggaaactccttcctccagtattcgaggagttaagtgttcgggatgca
ggcgtgcgactcatgaccacgttgactctctgcccgggaaatgcccctaaggaatcacag
cttttcttgcactttactgttggttcagccccctctgctggcatggagatggacataatc
gtagagaagacatgcaccgtcaaagaatgtcttaaagctatgctggatgctgttgggctt
gatggtaccagttggcacttaaggaggctagattggtgtgaggaagttggagagccacta
atggatgaggatgcttccctgtcagacctcaagatcagcaatggagaaacgctagttgtt
acagaaggacttttaccaccaaagggctttctcaaactttctgtgtggctttttatggat
ctgagatctaattgcacagaaggcagtcctgctgagcagcggatgtgggaaacggatgct
actgatggattttgtgctccgttactgcatggtgaaaacatggtggagctaagaaacatt
ggaaaggttgagatatccgatgatgccatgctggaagacttaaagacccaggttttgacg
ctaccagcactccaggacgtatgtgtcccggtcactagtttcctgcgtgtttggcagatg
gacggagggcgtccaacacgtatacttagaggacaacaagttacactcaggaagctgaag
ttgaccagtgagacagatctttgtgtgcagggcctcctcaaagaggaagatcttgggccg
aaacaggtgctgctgaatgtaaagatgggtgttccaggagagaggaggtattatcctaca
gaggagctggtttgggacacttccaaggactcttctcctcgatctctgcgcaccagtctg
gctgcgcattacggcctctctcccgattctctgctgctcgccaaacatcagcctgaaaaa
cacacctgggaagaaatctccaactggactcagcagttttctaaaaagaagaaaaagaaa
aaggcagaatcccttttggggccgccatttaaccttagagatggagatgtgattggtatt
aagaaccttttgattgacaataacagggacttcatcacagaagaggatcagcagggccag
cagaggctcagggaacaggcagagcaacgcaggaaaggagcgcaggctgcagcctccaac
ggtgccgggaaaaacaaacccaggaaggtagaggtgccgttgtccatcagcgttggagag
ttcagatag
DBGET
integrated database retrieval system
