Cyprinodon variegatus (sheepshead minnow): 107096343
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Entry
107096343 CDS
T06110
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04382
Cornified envelope formation
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04518
Integrin signaling
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107096343
04518 Integrin signaling
107096343
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107096343
09142 Cell motility
04820 Cytoskeleton in muscle cells
107096343
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107096343
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107096343
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107096343
Exosome [BR:
cvg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107096343
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107096343
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107096343
NCBI-ProteinID:
XP_015248439
LinkDB
All DBs
Position
Unknown
AA seq
1706 aa
AA seq
DB search
MAGSAGSGHHRPLRWQALPAAATIGLSDGRLCRQRPPSASPMLKEVEPFTRHINSVDHNI
KFTREDANDNKLPFLDCLACHCTGKSLCHCDGVKGQKGEPGYIGDPGLPGVTGFPGNEGS
QGSPGEKGNRGRAGSPGIKGSLGIRGRPGLPGIPGLPGLPGHEGQTGRPGNPGCNGTKGE
EGYPGYPGNAGPRGPRGPQGPRGMKGDSATYPTQRQIKGATGPQGQKGRTGENGRRGETG
RSGPPGPIGRPGKPGLPGVQGEKGQQGSSPTSPRGQKGDPGPPGIPGKQGIKLYAEGPKE
LKGVPGEIGPKGFPGLPGLPGKPGIKGEKGDKGEPGPLGKKGKNGLPGEVGLKGDKGDAG
LIGPPGIDGALGLKGNRGPPGPPGEIRHNHSFLKGQPGVPGPPGPKGLPGSQGPTGPPGV
MGESGMAISGPPGFRGSPGSPGPKGEPGVPGPVVRGPPGPTGIPGAPGAKGEQGEPGILN
YQPGRTGPPGEKGERGLPGPRGKSGEKGQKGEICTVCVTKSCPPGLQGPPGQEGKSGTPG
PQGCRGPAGDKGFKGVPGPPGPRGSIGLPGRLGLPGPTGDLGIITRLGQKGEDGDKGNPG
PPGQQGRDGSNGAPGPKGVQGPQGNPSPPGPKGDRGPIGNTGPQGPQGQMGPTGEPGIGA
PGPPGSKGDSGLLGKPGEPGPQGEKGSPGQIFPVQGDPGQKGKRGFLGIPGDEGIRGPRG
LQGDAGPKGEKGLTGVSQCGTPGKPGSKGDKGSKGGQGKPSFGIKGREGPRGPPGPNGVK
GNKGIGVPGEQGQEGSQGEDGCVGPPGAPGPPGPEGAQGPPGEDGPQGPKGNYGLKGLPG
PTGVPGLCYPGAPGPRGVQGPEGLIGLKGNTGPRGQKGDPGIDTFGFPGPRGPRGTPGSD
GPPGPVGAVGRKGLKGRSGDPGSPGIRGEMGLPGQSGSPGPDGKPGNYGEPGPTGDRGAD
GLKGFQGPPGGPGDKGDTGPKGFPTTTTVPGYPGDMGLPGPRGRTGEIGERGPSGPPGSD
GLEGSSGSQGPPGLPGDPGRDGERGPPGVTGPPGDKGFIGNPGCKGGKGAKGTCGAPGRN
GTPGRNGAKGPKGEPSLAGPGPKGYPGAKGNPGSQGLPGPEGPQGASGDCGSPGRCGLCG
PKGSPGPTGYRGPPGKEGEKGFDGPRGKFGPPGQPGPPGYKGPPGNPGPPGPKGSQGQDG
IPGPDGEKGSMGSCTPGPKGRKGEAGPTGSTGNRGSPGPYGPSGPVGPPGNPGFPGFPGP
PGPPGSAGESGSCINGIKGNKGCPGSKGPKGPPGSKGPPGPPGPGYKGQKGLKGQPGPPG
PPGPSGHPGPGGNPGTCGPPGPPGIKGNPGPAGEKGPRGMEGTEGLPGNPGKDGFPGLQG
RQGQRGIDERPIVRAIPGDQGEMGDPGFDGRRGPPGCKGAMGRDGLKGRAGEKGQKGQPG
LPGLRGEDGDDGAIGAKGEDGERGRTGFKGLPGPPGGVRPGMNGFLFTRHSQGRFIPECP
SGSSFIFDGYSLLFINGYSRAHGQDLGTVGSCLPRFSTLPFLICEIAGECQYAERNDYSY
WLSNVRDPQTNREEDSLQFKISRCSVCEAKANVIAVHSQTSYVPRCPSNWVSLWEGYSFV
METGLGAEGSGQPLVSPGSCLENFHRMPFIECNGNPGTCKYDSGHYSYWLAALNQGNMFG
KPRGWTIPGDTHRNKISRCRVCMKQI
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggcaggctctgccggcagcggccaccatcggcctctccgatggcaggctctgccggca
gcggccaccatcggcctctccgatggcaggctctgccggcagcggccaccatcggcctct
ccgatgctaaaagaagtggaacctttcacaagacacattaactcagtggaccacaacatc
aagttcaccagagaagatgccaacgacaacaagctaccttttctggactgcttggcctgt
cactgcaccgggaagtctctctgccactgtgatggggtcaagggtcagaagggagaacct
ggatacattggagaccctggacttccaggagtaaccggatttcctggaaacgaaggcagt
cagggctcgcctggagaaaagggtaatcgaggaagagcagggagtccaggaataaaaggc
tctctgggtattagaggaagaccaggtttaccaggcattccaggacttccaggtctccct
gggcatgaaggacaaaccggccgacctggaaacccaggatgcaatgggacaaaaggggag
gagggttacccaggttatccaggaaatgcgggaccacgcggaccaagaggaccccaggga
ccaagagggatgaagggagactcagctacataccccactcagcgacaaataaaaggagca
acaggacctcaagggcaaaagggaagaacgggagaaaatggaagaagaggagaaacaggc
cgatcaggaccaccaggacccattggacgtcctggaaaacctggactgcccggagttcaa
ggtgaaaagggtcaacaagggtccagtccgacgagcccacgaggacaaaagggtgatcct
ggacctccagggatccctggaaagcagggaataaaactgtatgctgaaggacccaaagag
ctgaagggagtaccaggtgaaataggaccgaaaggttttcctggacttcctggtctgcca
gggaaacctgggattaaaggagagaagggcgataagggagaacctggacctcttggtaaa
aaagggaagaatggattaccaggagaagttggactaaagggagataaaggagatgctggc
cttatcggtcctcctggtattgatggtgccttggggttaaagggcaatcgagggcctcca
ggtcccccaggagaaatcagacacaaccactcatttctgaaaggccagcctggtgtccct
ggcccccccgggcccaaaggattgcctgggtctcaaggaccgactggtcctcctggagtg
atgggcgagtcaggtatggctatcagtggaccaccaggcttcagaggatcacctggctca
cctggtcctaaaggagaaccaggagtgccagggccagtggttagaggaccacctggacca
accggaatcccaggagctcctggagctaaaggagagcaaggagaacccggaatattgaac
tatcagccaggaagaaccggtcctccaggagaaaaaggggaaagaggacttcctggaccg
agaggaaagagtggggagaagggtcaaaaaggggagatttgtacagtttgtgtgaccaag
tcttgccctcctggacttcagggaccaccaggccaggagggtaaaagtgggacaccaggt
ccacaaggttgtagagggcctgcgggtgataaaggtttcaaaggtgttccagggccacct
ggaccacggggttccattggtttgcctggccgtctagggctcccgggaccaacaggtgat
ttaggtatcattactagactggggcagaagggcgaagatggggacaaggggaatcctggg
ccaccaggacaacaagggagggatggatctaatggagcaccaggcccaaagggtgttcaa
ggaccgcaggggaatcctagtccaccagggccaaaaggtgacaggggcccaattggcaac
actggtccccaaggaccgcaaggccagatggggcctacaggagagcctggtattggggct
ccagggcctccaggatctaaaggagatagcgggttactgggaaagcctggagaaccgggg
cctcaaggagaaaagggttctccagggcaaatatttccagttcaaggagatccaggccag
aaaggaaagagaggatttcttgggatccctggagacgaaggtataagaggacctcgaggc
cttcaaggtgatgcgggtcctaagggggaaaaggggctgacaggtgtttctcagtgcggt
accccaggaaaaccagggtcaaagggagacaagggttccaaaggaggacagggtaaaccc
agttttggaatcaagggacgagaggggccacgaggccccccagggcccaatggcgtgaag
gggaacaaaggtataggtgtacctggggagcagggtcaggaaggctctcagggagaagat
ggctgtgttggaccaccaggagctcctgggcctccaggtccagagggtgctcagggaccc
ccaggagaagatggtcctcaagggccaaaaggtaactatggcctgaaaggtttacctggt
cctactggagtgcctggactctgttaccctggagctccaggacctcgaggagtgcaaggt
ccagaaggtttaattggattaaaaggaaacacgggaccaaggggtcagaaaggggatcct
gggattgacacatttggattccctgggcctagggggccaagagggacaccaggatctgat
ggaccgccaggtccagtcggagctgtgggaaggaaaggcctgaaagggagaagtggggac
cctgggagcccaggtatcagaggggaaatgggtcttccaggacagtctggaagtccagga
ccggatggtaaaccaggcaattatggggaaccgggaccaacaggtgataggggcgcagat
gggctaaagggttttcaggggcctcctggaggtccaggagataaaggggacaccggacca
aaaggatttccaacaactactactgtaccaggatatcctggggatatgggtttgccaggg
cccaggggtcgtaccggtgaaataggagaaagaggcccctcaggacctccagggtcagat
ggcttagaagggtcatctggatcccaaggaccaccaggacttcctggagatccaggcaga
gacggagagagaggtccacctggtgttactgggcctccaggtgataaagggttcattggg
aatccaggttgcaaggggggaaaaggtgcaaaaggaacttgtggggcccctggtaggaat
ggaacaccaggaagaaatggagcaaaaggtcctaaaggagaaccaagtctagctggacct
ggacctaaaggttatccaggagcaaaggggaatcctggaagtcaaggtcttccaggtcca
gaaggaccacagggagcatctggagattgtggttctccaggacgatgtggactttgtgga
cctaagggatctcctggaccaactggatacagaggtccacctgggaaagaaggtgagaaa
ggttttgatggccctcgtggaaaatttggacctccaggacagcctggacccccaggatac
aagggacctcctggaaatcctggtccacctggacctaaaggaagccagggccaagatggg
atacctggacctgatggagaaaagggatccatgggatcctgtacaccagggcctaaggga
cgaaaaggagaagcaggtccaactggatccacagggaatagggggtcaccaggtccctat
ggcccttccggtccagttggtcctccaggaaacccaggattcccaggttttcctgggccc
cctggtcctcctgggtctgctggagagagtgggtcctgcattaatggaataaagggaaat
aaaggatgccctggatcaaaaggacccaaaggtccacctggctctaaaggtccccctgga
cctccaggtcctggttataagggtcagaaaggattgaaaggacaaccaggtccccctgga
ccccctggaccatctggtcatcctggtcctggaggaaacccaggtacttgtggaccacct
ggacctcctggaataaaaggcaatccaggaccagctggagaaaaaggaccaaggggtatg
gaaggaacagaaggactgcccggtaaccctggcaaagacggatttccaggactacaggga
aggcaaggacaaagagggatagatgaacgtcctattgtgagggcaattcctggagaccaa
ggtgaaatgggagaccccgggttcgatggaagaagaggaccccccggttgcaaaggagct
atgggacgtgatggtttgaaaggcagagctggagaaaaaggtcagaaggggcaacctggt
cttcctgggctgaggggagaagatggagacgatggagcaattggtgccaaaggtgaggac
ggtgagcgtggcagaacagggtttaagggccttcccggtccaccaggtggagtcagacct
gggatgaacggcttcctgttcaccagacacagccagggtcgctttatcccagagtgtccc
tcaggatcctcctttatattcgatggatactccctgttgtttatcaatgggtacagccgc
gcccacggacaggatctaggtacagttggtagttgtctcccgaggttcagcactctaccc
ttcctcatctgtgagattgcgggagaatgtcagtacgcagaacgtaatgactactcctat
tggctctccaatgtcagagaccctcagacaaacagagaagaggattcgctacagtttaaa
atcagcaggtgttccgtttgtgaggccaaagccaacgtgattgctgtccacagtcagacc
agttacgttccaagatgcccctccaactgggtatcactctgggaaggatattccttcgta
atggaaactggtttaggtgctgagggttccggtcagcctctggtttcacctggatcgtgt
ttggagaatttccacaggatgcccttcatcgagtgtaacggaaaccccggaacctgcaag
tatgacagcggacactacagctactggctggctgctctcaaccagggaaacatgtttgga
aagccaagaggttggaccattccaggagacacacacagaaacaaaattagtcgctgtcga
gtctgcatgaagcagatatga
DBGET
integrated database retrieval system
